Stderr output

<core_client_version>8.2.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-03 09:54:39 (40504): Detected: vboxwrapper 26206
2025-06-03 09:54:39 (40504): Detected: BOINC client v8.2.1
2025-06-03 09:54:40 (40504): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-06-03 09:54:40 (40504): Successfully copied 'init_data.xml' to the shared directory.
2025-06-03 09:54:41 (40504): Create VM. (boinc_f3613430ea9e8352, slot#23)
2025-06-03 09:54:41 (40504): Setting Memory Size for VM. (4096MB)
2025-06-03 09:54:42 (40504): Setting CPU Count for VM. (1)
2025-06-03 09:54:42 (40504): Setting Chipset Options for VM.
2025-06-03 09:54:42 (40504): Setting Graphics Controller Options for VM.
2025-06-03 09:54:43 (40504): Setting Boot Options for VM.
2025-06-03 09:54:43 (40504): Setting Network Configuration for NAT.
2025-06-03 09:54:43 (40504): Enabling VM Network Access.
2025-06-03 09:54:43 (40504): Disabling USB Support for VM.
2025-06-03 09:54:44 (40504): Disabling COM Port Support for VM.
2025-06-03 09:54:44 (40504): Disabling LPT Port Support for VM.
2025-06-03 09:54:44 (40504): Disabling Audio Support for VM.
2025-06-03 09:54:44 (40504): Disabling Clipboard Support for VM.
2025-06-03 09:54:45 (40504): Disabling Drag and Drop Support for VM.
2025-06-03 09:54:45 (40504): Adding storage controller(s) to VM.
2025-06-03 09:54:45 (40504): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-03 09:54:46 (40504): Adding VirtualBox Guest Additions to VM.
2025-06-03 09:54:46 (40504): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-03 09:54:46 (40504): forwarding host port 57442 to guest port 80
2025-06-03 09:54:46 (40504): Enabling remote desktop for VM.
2025-06-03 09:54:47 (40504): Required extension pack not installed, remote desktop not enabled.
2025-06-03 09:54:47 (40504): Enabling shared directory for VM.
2025-06-03 09:54:47 (40504): Starting VM using VBoxManage interface. (boinc_f3613430ea9e8352, slot#23)
2025-06-03 09:54:52 (40504): Successfully started VM. (PID = '34532')
2025-06-03 09:54:52 (40504): Reporting VM Process ID to BOINC.
2025-06-03 09:54:52 (40504): Guest Log: BIOS: VirtualBox 7.1.8
2025-06-03 09:54:52 (40504): Guest Log: CPUID EDX: 0x178bfbff
2025-06-03 09:54:52 (40504): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-03 09:54:52 (40504): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-03 09:54:52 (40504): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-03 09:54:52 (40504): Detected: Web Application Enabled (http://localhost:57442)
2025-06-03 09:54:52 (40504): Preference change detected
2025-06-03 09:54:52 (40504): Setting CPU throttle for VM. (100%)
2025-06-03 09:54:52 (40504): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-03 09:54:54 (40504): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-03 09:54:54 (40504): Guest Log: BIOS: Booting from Hard Disk...
2025-06-03 09:54:56 (40504): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-03 09:54:56 (40504): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-03 09:54:56 (40504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-03 09:54:56 (40504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-03 09:54:56 (40504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-03 09:54:56 (40504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-03 09:54:56 (40504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-03 09:54:56 (40504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-03 09:54:56 (40504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-03 09:54:56 (40504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-03 09:54:56 (40504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-03 09:54:56 (40504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-03 09:54:56 (40504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-03 09:54:56 (40504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-03 09:54:56 (40504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-03 09:54:56 (40504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-03 09:54:56 (40504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-03 09:54:56 (40504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-03 09:54:56 (40504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-03 09:54:56 (40504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-03 09:54:56 (40504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-03 09:54:56 (40504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-03 09:54:56 (40504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-03 09:54:56 (40504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-03 09:54:56 (40504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-03 09:54:56 (40504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-03 09:54:56 (40504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-03 09:54:56 (40504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-03 09:54:56 (40504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-03 09:54:56 (40504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-03 09:54:56 (40504): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-03 09:54:56 (40504): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-03 09:54:59 (40504): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-03 09:54:59 (40504): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-03 09:55:05 (40504): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-03 09:55:05 (40504): Guest Log: 00:00:00.000089 main     Log opened 2025-06-03T09:55:03.009349000Z
2025-06-03 09:55:05 (40504): Guest Log: 00:00:00.000171 main     OS Product: Linux
2025-06-03 09:55:05 (40504): Guest Log: 00:00:00.000201 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-03 09:55:05 (40504): Guest Log: 00:00:00.000216 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-03 09:55:05 (40504): Guest Log: 00:00:00.000230 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-03 09:55:05 (40504): Guest Log: 00:00:00.000230 main     Process ID: 1263
2025-06-03 09:55:05 (40504): Guest Log: 00:00:00.000231 main     Package type: LINUX_64BITS_GENERIC
2025-06-03 09:55:05 (40504): Guest Log: 00:00:00.000880 main     5.2.32 r132073 started. Verbose level = 0
2025-06-03 09:55:05 (40504): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-03 09:55:05 (40504): Guest Log: [INFO] Mounting shared directory
2025-06-03 09:55:05 (40504): Guest Log: [INFO] Checking for init_data.xml
2025-06-03 09:55:07 (40504): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-03 09:55:07 (40504): Guest Log: [INFO] Detected branch: prod
2025-06-03 09:55:07 (40504): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-03 09:55:07 (40504): Guest Log: Copying input files
2025-06-03 09:55:08 (40504): Guest Log: Copied input files into RunAtlas.
2025-06-03 09:55:08 (40504): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-06-03 09:55:15 (40504): Guest Log: 00:00:10.010642 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 713 371 000ns (GuestNow=1 748 937 314 306 246 000 ns GuestLast=1 748 944 503 019 617 000 ns fSetTimeLastLoop=true )
2025-06-03 09:55:26 (40504): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-03 09:55:26 (40504): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-03 09:55:26 (40504): Guest Log: 2.6.3.0 1532 0 29528 146734 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-06-03 09:55:26 (40504): Guest Log: copied the webapp to /var/www
2025-06-03 09:55:26 (40504): Guest Log: core_number=1
2025-06-03 09:55:26 (40504): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-03 09:55:27 (40504): Guest Log:  *** Starting ATLAS job. (PandaID=6677419902 taskID=45006595) ***
2025-06-03 11:34:54 (40504): Status Report: Elapsed Time: '6000.000000'
2025-06-03 11:34:54 (40504): Status Report: CPU Time: '5699.125000'
2025-06-03 13:14:57 (40504): Status Report: Elapsed Time: '12000.000000'
2025-06-03 13:14:57 (40504): Status Report: CPU Time: '11678.593750'
2025-06-03 14:55:00 (40504): Status Report: Elapsed Time: '18000.000000'
2025-06-03 14:55:00 (40504): Status Report: CPU Time: '17655.281250'
2025-06-03 16:16:28 (40504): Guest Log:  *** Job finished ***
2025-06-03 16:16:28 (40504): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-03 16:16:28 (40504): Guest Log: 2025-06-03 14:16:09,034 | INFO     | [job] validate thread has finished
2025-06-03 16:16:28 (40504): Guest Log: 2025-06-03 14:16:09,144 | INFO     | [payload] run_realtimelog thread has finished
2025-06-03 16:16:28 (40504): Guest Log: 2025-06-03 14:16:11,699 | INFO     | [data] queue_monitor thread has finished
2025-06-03 16:16:28 (40504): Guest Log: 2025-06-03 14:16:13,722 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140683264350016)>', '<ExcThread(monitor, started 140682945599232)>']
2025-06-03 16:16:28 (40504): Guest Log: 2025-06-03 14:16:13,916 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-03 16:16:28 (40504): Guest Log: 2025-06-03 14:16:13,916 | INFO     | [monitor] control thread has ended
2025-06-03 16:16:28 (40504): Guest Log: 2025-06-03 14:16:18,727 | INFO     | all workflow threads have been joined
2025-06-03 16:16:28 (40504): Guest Log: 2025-06-03 14:16:18,728 | INFO     | end of generic workflow (traces error code: 0)
2025-06-03 16:16:28 (40504): Guest Log: 2025-06-03 14:16:18,728 | INFO     | traces error code: 0
2025-06-03 16:16:28 (40504): Guest Log: 2025-06-03 14:16:18,728 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-03 16:16:28 (40504): Guest Log: 2025-06-03 14:16:18,813 [wrapper] ==== pilot stdout END ====
2025-06-03 16:16:28 (40504): Guest Log: 2025-06-03 14:16:18,815 [wrapper] ==== wrapper stdout RESUME ====
2025-06-03 16:16:28 (40504): Guest Log: 2025-06-03 14:16:18,816 [wrapper] pilotpid: 5773
2025-06-03 16:16:28 (40504): Guest Log: 2025-06-03 14:16:18,818 [wrapper] Pilot exit status: 0
2025-06-03 16:16:28 (40504): Guest Log: 2025-06-03 14:16:18,833 [wrapper] pandaids: 6677419902
2025-06-03 16:16:28 (40504): Guest Log: 2025-06-03 14:16:18,846 [wrapper] cleanup supervisor_pilot 28822 5774
2025-06-03 16:16:28 (40504): Guest Log: 2025-06-03 14:16:18,848 [wrapper] Test setup, not cleaning
2025-06-03 16:16:28 (40504): Guest Log: 2025-06-03 14:16:18,850 [wrapper] apfmon messages muted
2025-06-03 16:16:28 (40504): Guest Log: 2025-06-03 14:16:18,852 [wrapper] ==== wrapper stdout END ====
2025-06-03 16:16:28 (40504): Guest Log: 2025-06-03 14:16:18,854 [wrapper] ==== wrapper stderr END ====
2025-06-03 16:16:28 (40504): Guest Log:  *** Error codes and diagnostics ***
2025-06-03 16:16:28 (40504): Guest Log:     "exeErrorCode": 0,
2025-06-03 16:16:28 (40504): Guest Log:     "exeErrorDiag": "",
2025-06-03 16:16:28 (40504): Guest Log:     "pilotErrorCode": 0,
2025-06-03 16:16:28 (40504): Guest Log:     "pilotErrorDiag": "",
2025-06-03 16:16:28 (40504): Guest Log:  *** Listing of results directory ***
2025-06-03 16:16:28 (40504): Guest Log: total 181608
2025-06-03 16:16:28 (40504): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  2 23:21 pilot3.tar.gz
2025-06-03 16:16:28 (40504): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  2 23:40 queuedata.json
2025-06-03 16:16:28 (40504): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  2 23:40 runpilot2-wrapper.sh
2025-06-03 16:16:28 (40504): Guest Log: -rwxr-xr-x. 1 atlas atlas      9354 Jun  3 07:55 init_data.xml
2025-06-03 16:16:28 (40504): Guest Log: -rwxr-xr-x. 1 atlas atlas    508880 Jun  3 07:55 input.tar.gz
2025-06-03 16:16:28 (40504): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  3 07:55 start_atlas.sh
2025-06-03 16:16:28 (40504): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  3 07:55 EVNT.45006593._000581.pool.root.1 -> /data/./ATLAS.root_0
2025-06-03 16:16:28 (40504): Guest Log: -rw-r--r--. 1 atlas atlas      2524 Jun  3 07:55 pandaJob.out
2025-06-03 16:16:28 (40504): Guest Log: -rw-------. 1 atlas atlas    985499 Jun  3 07:55 agis_schedconf.cvmfs.json
2025-06-03 16:16:28 (40504): Guest Log: drwx------. 4 atlas atlas      4096 Jun  3 07:55 pilot3
2025-06-03 16:16:28 (40504): Guest Log: -rw-------. 1 atlas atlas        95 Jun  3 14:15 pilot_heartbeat.json
2025-06-03 16:16:28 (40504): Guest Log: -rw-------. 1 atlas atlas 177361449 Jun  3 14:15 HITS.45006595._014527.pool.root.1
2025-06-03 16:16:28 (40504): Guest Log: -rw-------. 1 atlas atlas      1024 Jun  3 14:15 memory_monitor_summary.json
2025-06-03 16:16:28 (40504): Guest Log: -rw-------. 1 atlas atlas   1603667 Jun  3 14:16 agis_ddmendpoints.agis.ALL.json
2025-06-03 16:16:28 (40504): Guest Log: -rw-------. 1 atlas atlas    385517 Jun  3 14:16 log.45006595._014527.job.log.tgz.1
2025-06-03 16:16:28 (40504): Guest Log: -rw-------. 1 atlas atlas      7675 Jun  3 14:16 heartbeat.json
2025-06-03 16:16:28 (40504): Guest Log: -rw-------. 1 atlas atlas      4536 Jun  3 14:16 pilotlog.txt
2025-06-03 16:16:28 (40504): Guest Log: -rw-------. 1 atlas atlas   2031732 Jun  3 14:16 log.45006595._014527.job.log.1
2025-06-03 16:16:28 (40504): Guest Log: -rw-------. 1 atlas atlas       357 Jun  3 14:16 output.list
2025-06-03 16:16:28 (40504): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  3 14:16 runtime_log
2025-06-03 16:16:28 (40504): Guest Log: -rw-------. 1 atlas atlas   2437120 Jun  3 14:16 result.tar.gz
2025-06-03 16:16:28 (40504): Guest Log: -rw-r--r--. 1 atlas atlas      8465 Jun  3 14:16 runtime_log.err
2025-06-03 16:16:28 (40504): Guest Log: -rw-------. 1 atlas atlas       657 Jun  3 14:16 9jPKDmOwTg7n9Rq4apOajLDm4fhM0noT9bVof3QYDm0rWKDmRGXJSn.diag
2025-06-03 16:16:28 (40504): Guest Log: Looking for outputfile HITS.45006595._014527.pool.root.1
2025-06-03 16:16:28 (40504): Guest Log: HITS file was successfully produced
2025-06-03 16:16:28 (40504): Guest Log: -rw-------. 1 atlas atlas 177361449 Jun  3 14:15 /home/atlas/RunAtlas/HITS.45006595._014527.pool.root.1
2025-06-03 16:16:29 (40504): Guest Log: Successfully finished the ATLAS job!
2025-06-03 16:16:29 (40504): Guest Log: Copying the results back to the shared directory!
2025-06-03 16:16:29 (40504): Guest Log:  *** Contents of shared directory: ***
2025-06-03 16:16:29 (40504): Guest Log: total 386800
2025-06-03 16:16:29 (40504): Guest Log: -rwxrwxrwx. 1 root root 215740294 Jun  3 07:54 ATLAS.root_0
2025-06-03 16:16:29 (40504): Guest Log: -rwxrwxrwx. 1 root root 177361449 Jun  3  2025 HITS.pool.root.1
2025-06-03 16:16:29 (40504): Guest Log: -rwxrwxrwx. 1 root root      9354 Jun  3 07:54 init_data.xml
2025-06-03 16:16:29 (40504): Guest Log: -rwxrwxrwx. 1 root root    508880 Jun  3 07:23 input.tar.gz
2025-06-03 16:16:29 (40504): Guest Log: -rwxrwxrwx. 1 root root   2437120 Jun  3  2025 result.tar.gz
2025-06-03 16:16:29 (40504): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  3 07:23 start_atlas.sh
2025-06-03 16:16:29 (40504): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-03 16:16:29 (40504): VM Completion File Detected.
2025-06-03 16:16:29 (40504): Powering off VM.
2025-06-03 16:16:29 (40504): Successfully stopped VM.
2025-06-03 16:16:29 (40504): Deregistering VM. (boinc_f3613430ea9e8352, slot#23)
2025-06-03 16:16:30 (40504): Removing network bandwidth throttle group from VM.
2025-06-03 16:16:30 (40504): Removing VM from VirtualBox.
16:16:35 (40504): called boinc_finish(0)

</stderr_txt>
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