Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
20:17:16 (281825): wrapper (7.7.26015): starting
20:17:16 (281825): wrapper: running run_atlas (--nthreads 3)
[2025-06-03 20:17:16] Arguments: --nthreads 3
[2025-06-03 20:17:16] Threads: 3
[2025-06-03 20:17:16] Checking for CVMFS
[2025-06-03 20:17:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 20:17:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 20:17:16] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 20:17:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 20:17:16] 2.9.2.0 230893 163 52756 146750 0 56 28756794 36864001 0 130560 0 133700 99.987 71507 29944 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-06-03 20:17:16] CVMFS is ok
[2025-06-03 20:17:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 20:17:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 20:17:16] Further information can be found at the LHC@home message board.
[2025-06-03 20:17:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 20:17:16] Checking for apptainer binary...
[2025-06-03 20:17:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 20:17:16] Running /usr/bin/apptainer --version
[2025-06-03 20:17:16] apptainer version 1.3.6-6.1
[2025-06-03 20:17:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 20:17:17] atlasA115
[2025-06-03 20:17:17] apptainer works
[2025-06-03 20:17:17] Set ATHENA_PROC_NUMBER=3
[2025-06-03 20:17:17] Set ATHENA_CORE_NUMBER=3
[2025-06-03 20:17:17] Starting ATLAS job with PandaID=6668788705
[2025-06-03 20:17:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:01:30 (304510): wrapper (7.7.26015): starting
22:01:30 (304510): wrapper: running run_atlas (--nthreads 3)
[2025-06-03 22:01:30] Arguments: --nthreads 3
[2025-06-03 22:01:30] Threads: 3
[2025-06-03 22:01:30] This job has been restarted, cleaning up previous attempt
[2025-06-03 22:01:30] Checking for CVMFS
[2025-06-03 22:01:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 22:01:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 22:01:32] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 22:01:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 22:01:32] 2.9.2.0 304636 0 29548 146754 3 1 28767995 36864001 0 130560 0 0 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-06-03 22:01:32] CVMFS is ok
[2025-06-03 22:01:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 22:01:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 22:01:32] Further information can be found at the LHC@home message board.
[2025-06-03 22:01:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 22:01:32] Checking for apptainer binary...
[2025-06-03 22:01:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 22:01:32] Running /usr/bin/apptainer --version
[2025-06-03 22:01:32] apptainer version 1.3.6-6.1
[2025-06-03 22:01:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 22:01:32] atlasA115
[2025-06-03 22:01:32] apptainer works
[2025-06-03 22:01:32] Set ATHENA_PROC_NUMBER=3
[2025-06-03 22:01:32] Set ATHENA_CORE_NUMBER=3
[2025-06-03 22:01:32] Starting ATLAS job with PandaID=6668788705
[2025-06-03 22:01:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 23:56:35]  *** The last 200 lines of the pilot log: ***
[2025-06-03 23:56:35] 2025-06-03 21:56:15,459 | INFO     | mean y: 2364217.4018691587
[2025-06-03 23:56:35] 2025-06-03 21:56:15,459 | INFO     | -- intersect: -36827735112.29027
[2025-06-03 23:56:35] 2025-06-03 21:56:15,459 | INFO     | intersect: -36827735112.29027
[2025-06-03 23:56:35] 2025-06-03 21:56:15,459 | INFO     | chi2: 1.5203894075315378
[2025-06-03 23:56:35] 2025-06-03 21:56:15,459 | INFO     | current chi2=1.5203894075315378 (change=-0.1360014046029256 %)
[2025-06-03 23:56:35] 2025-06-03 21:56:15,459 | INFO     | right removable region: 106
[2025-06-03 23:56:35] 2025-06-03 21:56:15,459 | INFO     | sum of square deviations: 379832238.0
[2025-06-03 23:56:35] 2025-06-03 21:56:15,460 | INFO     | sum of deviations: -5083687357.0
[2025-06-03 23:56:35] 2025-06-03 21:56:15,460 | INFO     | mean x: 1748984472.0
[2025-06-03 23:56:35] 2025-06-03 21:56:15,460 | INFO     | mean y: 2403127.2429906544
[2025-06-03 23:56:35] 2025-06-03 21:56:15,460 | INFO     | -- intersect: 23410869703.73122
[2025-06-03 23:56:35] 2025-06-03 21:56:15,460 | INFO     | intersect: 23410869703.73122
[2025-06-03 23:56:35] 2025-06-03 21:56:15,460 | INFO     | chi2: 0.09145556266279851
[2025-06-03 23:56:35] 2025-06-03 21:56:15,460 | INFO     | current chi2=0.09145556266279851 (change=93.97654685970919 %)
[2025-06-03 23:56:35] 2025-06-03 21:56:15,460 | INFO     | sum of square deviations: 329031285.5
[2025-06-03 23:56:35] 2025-06-03 21:56:15,460 | INFO     | sum of deviations: -1660510188.5000002
[2025-06-03 23:56:35] 2025-06-03 21:56:15,460 | INFO     | mean x: 1748984624.5
[2025-06-03 23:56:35] 2025-06-03 21:56:15,460 | INFO     | mean y: 2392913.4411764704
[2025-06-03 23:56:35] 2025-06-03 21:56:15,460 | INFO     | -- intersect: 8828929831.0441
[2025-06-03 23:56:35] 2025-06-03 21:56:15,460 | INFO     | intersect: 8828929831.0441
[2025-06-03 23:56:35] 2025-06-03 21:56:15,460 | INFO     | chi2: 0.06173267728309454
[2025-06-03 23:56:35] 2025-06-03 21:56:15,460 | INFO     | current chi2=0.06173267728309454 (change=32.49981139943758 %)
[2025-06-03 23:56:35] 2025-06-03 21:56:15,460 | INFO     | sum of square deviations: 282974608.0
[2025-06-03 23:56:35] 2025-06-03 21:56:15,461 | INFO     | sum of deviations: 1081136000.9999998
[2025-06-03 23:56:35] 2025-06-03 21:56:15,461 | INFO     | mean x: 1748984777.0
[2025-06-03 23:56:35] 2025-06-03 21:56:15,461 | INFO     | mean y: 2383821.154639175
[2025-06-03 23:56:35] 2025-06-03 21:56:15,461 | INFO     | -- intersect: -6679807280.654949
[2025-06-03 23:56:35] 2025-06-03 21:56:15,461 | INFO     | intersect: -6679807280.654949
[2025-06-03 23:56:35] 2025-06-03 21:56:15,461 | INFO     | chi2: 0.0350378377665259
[2025-06-03 23:56:35] 2025-06-03 21:56:15,461 | INFO     | current chi2=0.0350378377665259 (change=43.24264018900571 %)
[2025-06-03 23:56:35] 2025-06-03 21:56:15,461 | INFO     | sum of square deviations: 241429643.0
[2025-06-03 23:56:35] 2025-06-03 21:56:15,461 | INFO     | sum of deviations: 3132432380.499999
[2025-06-03 23:56:35] 2025-06-03 21:56:15,461 | INFO     | mean x: 1748984929.5
[2025-06-03 23:56:35] 2025-06-03 21:56:15,461 | INFO     | mean y: 2376407.032608696
[2025-06-03 23:56:35] 2025-06-03 21:56:15,461 | INFO     | -- intersect: -22689853752.013386
[2025-06-03 23:56:35] 2025-06-03 21:56:15,461 | INFO     | intersect: -22689853752.013386
[2025-06-03 23:56:35] 2025-06-03 21:56:15,461 | INFO     | chi2: 0.00022287802669174338
[2025-06-03 23:56:35] 2025-06-03 21:56:15,461 | INFO     | current chi2=0.00022287802669174338 (change=99.36389331962523 %)
[2025-06-03 23:56:35] 2025-06-03 21:56:15,461 | INFO     | sum of square deviations: 204163828.0
[2025-06-03 23:56:35] 2025-06-03 21:56:15,461 | INFO     | sum of deviations: 2615015466.0000005
[2025-06-03 23:56:35] 2025-06-03 21:56:15,462 | INFO     | mean x: 1748985082.0
[2025-06-03 23:56:35] 2025-06-03 21:56:15,462 | INFO     | mean y: 2378523.643678161
[2025-06-03 23:56:35] 2025-06-03 21:56:15,462 | INFO     | -- intersect: -22399351910.37463
[2025-06-03 23:56:35] 2025-06-03 21:56:15,462 | INFO     | intersect: -22399351910.37463
[2025-06-03 23:56:35] 2025-06-03 21:56:15,462 | INFO     | chi2: 0.00021525899688098484
[2025-06-03 23:56:35] 2025-06-03 21:56:15,462 | INFO     | current chi2=0.00021525899688098484 (change=3.4184750842649083 %)
[2025-06-03 23:56:35] 2025-06-03 21:56:15,462 | INFO     | left removable region: 50
[2025-06-03 23:56:35] 2025-06-03 21:56:15,462 | INFO     | sum of square deviations: 54438230.0
[2025-06-03 23:56:35] 2025-06-03 21:56:15,462 | INFO     | sum of deviations: 671692655.0
[2025-06-03 23:56:35] 2025-06-03 21:56:15,462 | INFO     | mean x: 1748985661.5
[2025-06-03 23:56:35] 2025-06-03 21:56:15,462 | INFO     | mean y: 2385979.535714286
[2025-06-03 23:56:35] 2025-06-03 21:56:15,462 | INFO     | -- intersect: -21577684175.755272
[2025-06-03 23:56:35] 2025-06-03 21:56:15,462 | INFO     | intersect: -21577684175.755272
[2025-06-03 23:56:35] 2025-06-03 21:56:15,462 | INFO     | chi2: 0.00013673817133875576
[2025-06-03 23:56:35] 2025-06-03 21:56:15,462 | INFO     | -- intersect: -21577684175.755272
[2025-06-03 23:56:35] 2025-06-03 21:56:15,462 | INFO     | current memory leak: 12.34 B/s (using 56 data points, chi2=0.00)
[2025-06-03 23:56:35] 2025-06-03 21:56:15,462 | INFO     | ..............................
[2025-06-03 23:56:35] 2025-06-03 21:56:15,462 | INFO     | . Timing measurements:
[2025-06-03 23:56:35] 2025-06-03 21:56:15,462 | INFO     | . get job = 0 s
[2025-06-03 23:56:35] 2025-06-03 21:56:15,462 | INFO     | . initial setup = 0 s
[2025-06-03 23:56:35] 2025-06-03 21:56:15,462 | INFO     | . payload setup = 7 s
[2025-06-03 23:56:35] 2025-06-03 21:56:15,463 | INFO     | . stage-in = 0 s
[2025-06-03 23:56:35] 2025-06-03 21:56:15,463 | INFO     | . payload execution = 6830 s
[2025-06-03 23:56:35] 2025-06-03 21:56:15,463 | INFO     | . stage-out = 0 s
[2025-06-03 23:56:35] 2025-06-03 21:56:15,463 | INFO     | . log creation = 0 s
[2025-06-03 23:56:35] 2025-06-03 21:56:15,463 | INFO     | ..............................
[2025-06-03 23:56:35] 2025-06-03 21:56:15,494 | INFO     | 
[2025-06-03 23:56:35] 2025-06-03 21:56:15,494 | INFO     | job summary report
[2025-06-03 23:56:35] 2025-06-03 21:56:15,494 | INFO     | --------------------------------------------------
[2025-06-03 23:56:35] 2025-06-03 21:56:15,494 | INFO     | PanDA job id: 6668788705
[2025-06-03 23:56:35] 2025-06-03 21:56:15,494 | INFO     | task id: 44871837
[2025-06-03 23:56:35] 2025-06-03 21:56:15,494 | INFO     | errors: (none)
[2025-06-03 23:56:35] 2025-06-03 21:56:15,494 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 23:56:35] 2025-06-03 21:56:15,494 | INFO     | pilot state: finished 
[2025-06-03 23:56:35] 2025-06-03 21:56:15,494 | INFO     | transexitcode: 0
[2025-06-03 23:56:35] 2025-06-03 21:56:15,494 | INFO     | exeerrorcode: 0
[2025-06-03 23:56:35] 2025-06-03 21:56:15,494 | INFO     | exeerrordiag: 
[2025-06-03 23:56:35] 2025-06-03 21:56:15,494 | INFO     | exitcode: 0
[2025-06-03 23:56:35] 2025-06-03 21:56:15,494 | INFO     | exitmsg: OK
[2025-06-03 23:56:35] 2025-06-03 21:56:15,494 | INFO     | cpuconsumptiontime: 19829 s
[2025-06-03 23:56:35] 2025-06-03 21:56:15,494 | INFO     | nevents: 400
[2025-06-03 23:56:35] 2025-06-03 21:56:15,494 | INFO     | neventsw: 0
[2025-06-03 23:56:35] 2025-06-03 21:56:15,494 | INFO     | pid: 315140
[2025-06-03 23:56:35] 2025-06-03 21:56:15,495 | INFO     | pgrp: 315140
[2025-06-03 23:56:35] 2025-06-03 21:56:15,495 | INFO     | corecount: 3
[2025-06-03 23:56:35] 2025-06-03 21:56:15,495 | INFO     | event service: False
[2025-06-03 23:56:35] 2025-06-03 21:56:15,495 | INFO     | sizes: {0: 2405237, 6: 2405443, 11: 2405471, 6841: 2432630, 6843: 2441577, 6844: 2441633, 6852: 2441931}
[2025-06-03 23:56:35] 2025-06-03 21:56:15,495 | INFO     | --------------------------------------------------
[2025-06-03 23:56:35] 2025-06-03 21:56:15,495 | INFO     | 
[2025-06-03 23:56:35] 2025-06-03 21:56:15,495 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-06-03 23:56:35] 2025-06-03 21:56:15,507 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 23:56:35] 2025-06-03 21:56:15,507 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 23:56:35] 2025-06-03 21:56:15,507 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 23:56:35] 2025-06-03 21:56:15,507 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 23:56:35] 2025-06-03 21:56:15,507 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 23:56:35] 2025-06-03 21:56:15,507 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 23:56:35] 2025-06-03 21:56:15,507 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 23:56:35] 2025-06-03 21:56:15,507 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 23:56:35] 2025-06-03 21:56:15,507 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 23:56:35] 2025-06-03 21:56:15,507 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 23:56:35] 2025-06-03 21:56:15,507 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 23:56:35] 2025-06-03 21:56:15,507 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 23:56:35] 2025-06-03 21:56:15,507 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 23:56:35] 2025-06-03 21:56:15,507 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 23:56:35] 2025-06-03 21:56:15,507 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 23:56:35] 2025-06-03 21:56:15,507 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 23:56:35] 2025-06-03 21:56:15,507 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 23:56:35] 2025-06-03 21:56:15,507 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 23:56:35] 2025-06-03 21:56:15,507 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 23:56:35] 2025-06-03 21:56:15,507 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 23:56:35] 2025-06-03 21:56:15,507 | INFO     | job 6668788705 has completed (purged errors)
[2025-06-03 23:56:35] 2025-06-03 21:56:15,508 | INFO     | overall cleanup function is called
[2025-06-03 23:56:35] 2025-06-03 21:56:16,514 | INFO     | --- collectZombieJob: --- 10, [315140]
[2025-06-03 23:56:35] 2025-06-03 21:56:16,514 | INFO     | zombie collector waiting for pid 315140
[2025-06-03 23:56:35] 2025-06-03 21:56:16,514 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 23:56:35] 2025-06-03 21:56:16,515 | INFO     | collected zombie processes
[2025-06-03 23:56:35] 2025-06-03 21:56:16,515 | INFO     | will attempt to kill all subprocesses of pid=315140
[2025-06-03 23:56:35] 2025-06-03 21:56:16,555 | INFO     | process IDs to be killed: [315140] (in reverse order)
[2025-06-03 23:56:35] 2025-06-03 21:56:16,580 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 23:56:35] 2025-06-03 21:56:16,581 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 23:56:35] 2025-06-03 21:56:16,582 | INFO     | did not find any defunct processes belonging to 315140
[2025-06-03 23:56:35] 2025-06-03 21:56:16,583 | INFO     | did not find any defunct processes belonging to 315140
[2025-06-03 23:56:35] 2025-06-03 21:56:16,583 | INFO     | ready for new job
[2025-06-03 23:56:35] 2025-06-03 21:56:16,583 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 23:56:35] 2025-06-03 21:56:16,583 | INFO     | **************************************
[2025-06-03 23:56:35] 2025-06-03 21:56:16,584 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 23:56:35] 2025-06-03 21:56:16,584 | INFO     | **************************************
[2025-06-03 23:56:35] 2025-06-03 21:56:16,584 | INFO     | 
[2025-06-03 23:56:35] 2025-06-03 21:56:16,584 | INFO     | architecture information:
[2025-06-03 23:56:35] 2025-06-03 21:56:16,584 | INFO     | executing command: cat /etc/os-release
[2025-06-03 23:56:35] 2025-06-03 21:56:16,594 | INFO     | cat /etc/os-release:
[2025-06-03 23:56:35] NAME="CentOS Linux"
[2025-06-03 23:56:35] VERSION="7 (Core)"
[2025-06-03 23:56:35] ID="centos"
[2025-06-03 23:56:35] ID_LIKE="rhel fedora"
[2025-06-03 23:56:35] VERSION_ID="7"
[2025-06-03 23:56:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 23:56:35] ANSI_COLOR="0;31"
[2025-06-03 23:56:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 23:56:35] HOME_URL="https://www.centos.org/"
[2025-06-03 23:56:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 23:56:35] 
[2025-06-03 23:56:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 23:56:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 23:56:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 23:56:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 23:56:35] 
[2025-06-03 23:56:35] 2025-06-03 21:56:16,594 | INFO     | **************************************
[2025-06-03 23:56:35] 2025-06-03 21:56:17,098 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-03 23:56:35] 2025-06-03 21:56:17,111 | INFO     | sufficient remaining disk space (327155712000 B)
[2025-06-03 23:56:35] 2025-06-03 21:56:17,111 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 23:56:35] 2025-06-03 21:56:17,111 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 23:56:35] 2025-06-03 21:56:17,111 | INFO     | update_server=False
[2025-06-03 23:56:35] 2025-06-03 21:56:17,111 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 23:56:35] 2025-06-03 21:56:17,111 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 23:56:35] 2025-06-03 21:56:17,111 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:56:35] 2025-06-03 21:56:17,111 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 23:56:35] 2025-06-03 21:56:17,112 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 23:56:35] 2025-06-03 21:56:17,112 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 23:56:35] 2025-06-03 21:56:17,112 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 23:56:35] 2025-06-03 21:56:17,566 | INFO     | all job control threads have been joined
[2025-06-03 23:56:35] 2025-06-03 21:56:17,681 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 23:56:35] 2025-06-03 21:56:17,698 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:56:35] 2025-06-03 21:56:17,698 | INFO     | aborting loop
[2025-06-03 23:56:35] 2025-06-03 21:56:17,807 | INFO     | all data control threads have been joined
[2025-06-03 23:56:35] 2025-06-03 21:56:18,117 | INFO     | [job] retrieve thread has finished
[2025-06-03 23:56:35] 2025-06-03 21:56:18,118 | INFO     | [job] queue monitor thread has finished
[2025-06-03 23:56:35] 2025-06-03 21:56:18,222 | INFO     | all payload control threads have been joined
[2025-06-03 23:56:35] 2025-06-03 21:56:18,532 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 23:56:35] 2025-06-03 21:56:18,552 | INFO     | [payload] failed_post thread has finished
[2025-06-03 23:56:35] 2025-06-03 21:56:18,572 | INFO     | [job] control thread has finished
[2025-06-03 23:56:35] 2025-06-03 21:56:18,704 | INFO     | [job] job monitor thread has finished
[2025-06-03 23:56:35] 2025-06-03 21:56:18,813 | INFO     | [data] control thread has finished
[2025-06-03 23:56:35] 2025-06-03 21:56:18,821 | INFO     | [data] copytool_in thread has finished
[2025-06-03 23:56:35] 2025-06-03 21:56:19,117 | INFO     | [data] copytool_out thread has finished
[2025-06-03 23:56:35] 2025-06-03 21:56:19,228 | INFO     | [payload] control thread has finished
[2025-06-03 23:56:35] 2025-06-03 21:56:19,308 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 23:56:35] 2025-06-03 21:56:19,327 | INFO     | [job] validate thread has finished
[2025-06-03 23:56:35] 2025-06-03 21:56:19,349 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 23:56:35] 2025-06-03 21:56:19,473 | INFO     | [payload] validate_post thread has finished
[2025-06-03 23:56:35] 2025-06-03 21:56:21,689 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 23:56:35] 2025-06-03 21:56:27,530 | INFO     | job.realtimelogging is not enabled
[2025-06-03 23:56:35] 2025-06-03 21:56:28,536 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 23:56:35] 2025-06-03 21:56:30,184 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139829008086848)>', '<ExcThread(monitor, started 139828289070848)>']
[2025-06-03 23:56:35] 2025-06-03 21:56:31,182 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 23:56:35] 2025-06-03 21:56:31,183 | INFO     | [monitor] control thread has ended
[2025-06-03 23:56:35] 2025-06-03 21:56:35,208 | INFO     | all workflow threads have been joined
[2025-06-03 23:56:35] 2025-06-03 21:56:35,208 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 23:56:35] 2025-06-03 21:56:35,209 | INFO     | traces error code: 0
[2025-06-03 23:56:35] 2025-06-03 21:56:35,209 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 23:56:35] 2025-06-03 21:56:35,256 [wrapper] ==== pilot stdout END ====
[2025-06-03 23:56:35] 2025-06-03 21:56:35,260 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 23:56:35] 2025-06-03 21:56:35,263 [wrapper] pilotpid: 308627
[2025-06-03 23:56:35] 2025-06-03 21:56:35,266 [wrapper] Pilot exit status: 0
[2025-06-03 23:56:35] 2025-06-03 21:56:35,273 [wrapper] pandaids: 6668788705 6668788705
[2025-06-03 23:56:35] 2025-06-03 21:56:35,289 [wrapper] cleanup supervisor_pilot  329862 308628
[2025-06-03 23:56:35] 2025-06-03 21:56:35,292 [wrapper] Test setup, not cleaning
[2025-06-03 23:56:35] 2025-06-03 21:56:35,295 [wrapper] apfmon messages muted
[2025-06-03 23:56:35] 2025-06-03 21:56:35,297 [wrapper] ==== wrapper stdout END ====
[2025-06-03 23:56:35] 2025-06-03 21:56:35,300 [wrapper] ==== wrapper stderr END ====
[2025-06-03 23:56:35]  *** Error codes and diagnostics ***
[2025-06-03 23:56:35]     "exeErrorCode": 0,
[2025-06-03 23:56:35]     "exeErrorDiag": "",
[2025-06-03 23:56:35]     "pilotErrorCode": 0,
[2025-06-03 23:56:35]     "pilotErrorDiag": "",
[2025-06-03 23:56:35]  *** Listing of results directory ***
[2025-06-03 23:56:35] total 633244
[2025-06-03 23:56:35] drwx------ 4 boinc boinc      4096 Apr  3 10:00 pilot3
[2025-06-03 23:56:35] -rw-r--r-- 1 boinc boinc    495897 May 28 20:37 pilot3.tar.gz
[2025-06-03 23:56:35] -rw-r--r-- 1 boinc boinc      5111 May 28 20:39 queuedata.json
[2025-06-03 23:56:35] -rwx------ 1 boinc boinc     37140 May 28 20:39 runpilot2-wrapper.sh
[2025-06-03 23:56:35] -rw-r--r-- 1 boinc boinc       100 Jun  3 20:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 23:56:35] -rwxr-xr-x 1 boinc boinc      7986 Jun  3 20:17 run_atlas
[2025-06-03 23:56:35] -rw-r--r-- 1 boinc boinc       105 Jun  3 20:17 job.xml
[2025-06-03 23:56:35] -rw-r--r-- 3 boinc boinc 223875047 Jun  3 20:17 EVNT.44871834._003458.pool.root.1
[2025-06-03 23:56:35] -rw-r--r-- 3 boinc boinc 223875047 Jun  3 20:17 ATLAS.root_0
[2025-06-03 23:56:35] drwxrwx--x 2 boinc boinc      4096 Jun  3 20:17 shared
[2025-06-03 23:56:35] -rw-r--r-- 2 boinc boinc    508886 Jun  3 20:17 input.tar.gz
[2025-06-03 23:56:35] -rw-r--r-- 2 boinc boinc     15093 Jun  3 20:17 start_atlas.sh
[2025-06-03 23:56:35] -rw-r--r-- 1 boinc boinc         0 Jun  3 20:17 boinc_lockfile
[2025-06-03 23:56:35] -rw-r--r-- 1 boinc boinc      6690 Jun  3 22:01 init_data.xml
[2025-06-03 23:56:35] -rw-r--r-- 1 boinc boinc      2559 Jun  3 22:01 pandaJob.out
[2025-06-03 23:56:35] -rw------- 1 boinc boinc    986893 Jun  3 22:01 agis_schedconf.cvmfs.json
[2025-06-03 23:56:35] -rw------- 1 boinc boinc        96 Jun  3 23:55 pilot_heartbeat.json
[2025-06-03 23:56:35] -rw------- 1 boinc boinc 195023143 Jun  3 23:55 HITS.44871837._088831.pool.root.1
[2025-06-03 23:56:35] -rw-r--r-- 1 boinc boinc       530 Jun  3 23:55 boinc_task_state.xml
[2025-06-03 23:56:35] -rw------- 1 boinc boinc      1014 Jun  3 23:56 memory_monitor_summary.json
[2025-06-03 23:56:35] -rw------- 1 boinc boinc   1603667 Jun  3 23:56 agis_ddmendpoints.agis.ALL.json
[2025-06-03 23:56:35] -rw------- 1 boinc boinc    262474 Jun  3 23:56 log.44871837._088831.job.log.tgz.1
[2025-06-03 23:56:35] -rw------- 1 boinc boinc      7654 Jun  3 23:56 heartbeat.json
[2025-06-03 23:56:35] -rw-r--r-- 1 boinc boinc        28 Jun  3 23:56 wrapper_checkpoint.txt
[2025-06-03 23:56:35] -rw-r--r-- 1 boinc boinc      8192 Jun  3 23:56 boinc_mmap_file
[2025-06-03 23:56:35] -rw------- 1 boinc boinc      4552 Jun  3 23:56 pilotlog.txt
[2025-06-03 23:56:35] -rw------- 1 boinc boinc    649930 Jun  3 23:56 log.44871837._088831.job.log.1
[2025-06-03 23:56:35] -rw------- 1 boinc boinc       357 Jun  3 23:56 output.list
[2025-06-03 23:56:35] -rw-r--r-- 1 boinc boinc       620 Jun  3 23:56 runtime_log
[2025-06-03 23:56:35] -rw------- 1 boinc boinc    931840 Jun  3 23:56 result.tar.gz
[2025-06-03 23:56:35] -rw-r--r-- 1 boinc boinc      8833 Jun  3 23:56 runtime_log.err
[2025-06-03 23:56:35] -rw------- 1 boinc boinc       787 Jun  3 23:56 l0LNDm5rae7n9Rq4apOajLDm4fhM0noT9bVof3QYDmNyTKDmhdOf3m.diag
[2025-06-03 23:56:35] -rw-r--r-- 1 boinc boinc     22882 Jun  3 23:56 stderr.txt
[2025-06-03 23:56:35] HITS file was successfully produced:
[2025-06-03 23:56:35] -rw------- 1 boinc boinc 195023143 Jun  3 23:55 shared/HITS.pool.root.1
[2025-06-03 23:56:35]  *** Contents of shared directory: ***
[2025-06-03 23:56:35] total 410520
[2025-06-03 23:56:35] -rw-r--r-- 3 boinc boinc 223875047 Jun  3 20:17 ATLAS.root_0
[2025-06-03 23:56:35] -rw-r--r-- 2 boinc boinc    508886 Jun  3 20:17 input.tar.gz
[2025-06-03 23:56:35] -rw-r--r-- 2 boinc boinc     15093 Jun  3 20:17 start_atlas.sh
[2025-06-03 23:56:35] -rw------- 1 boinc boinc 195023143 Jun  3 23:55 HITS.pool.root.1
[2025-06-03 23:56:35] -rw------- 1 boinc boinc    931840 Jun  3 23:56 result.tar.gz
23:56:36 (304510): run_atlas exited; CPU time 19863.010545
23:56:36 (304510): called boinc_finish(0)

</stderr_txt>
]]>

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