Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:26:41 (11118): wrapper (7.7.26015): starting
17:26:41 (11118): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 17:26:41] Arguments: --nthreads 8
[2025-06-03 17:26:41] Threads: 8
[2025-06-03 17:26:41] Checking for CVMFS
[2025-06-03 17:26:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 17:26:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 17:26:42] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 17:26:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 17:26:43] 2.11.2.0 14465 31943 94144 146746 1 114 14477478 25165824 3990 130560 0 17125472 99.802 19475984 1998 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 17:26:43] CVMFS is ok
[2025-06-03 17:26:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 17:26:43] Checking for apptainer binary...
[2025-06-03 17:26:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 17:26:43] Running /usr/bin/apptainer --version
[2025-06-03 17:26:43] apptainer version 1.3.2-1.el7
[2025-06-03 17:26:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 17:26:45] cg-vwn249.simple-grid.lan
[2025-06-03 17:26:45] apptainer works
[2025-06-03 17:26:45] Set ATHENA_PROC_NUMBER=8
[2025-06-03 17:26:45] Set ATHENA_CORE_NUMBER=8
[2025-06-03 17:26:45] Starting ATLAS job with PandaID=6677420940
[2025-06-03 17:26:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/21 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 23:20:38]  *** The last 200 lines of the pilot log: ***
[2025-06-03 23:20:38] 2025-06-03 19:08:04,521 | INFO     | using path: /var/lib/boinc/slots/21/PanDA_Pilot-6677420940/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 23:20:38] 2025-06-03 19:08:04,522 | INFO     | extracted standard info from prmon json
[2025-06-03 23:20:38] 2025-06-03 19:08:04,522 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 23:20:38] 2025-06-03 19:08:04,522 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 23:20:38] 2025-06-03 19:08:04,523 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 23:20:38] 2025-06-03 19:08:04,523 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 23:20:38] 2025-06-03 19:08:04,528 | INFO     | fitting pss+swap vs Time
[2025-06-03 23:20:38] 2025-06-03 19:08:04,529 | INFO     | sum of square deviations: 3081657780.0
[2025-06-03 23:20:38] 2025-06-03 19:08:04,530 | INFO     | sum of deviations: -53979681349.00001
[2025-06-03 23:20:38] 2025-06-03 19:08:04,531 | INFO     | mean x: 1748971014.0
[2025-06-03 23:20:38] 2025-06-03 19:08:04,531 | INFO     | mean y: 2532520.6279069767
[2025-06-03 23:20:38] 2025-06-03 19:08:04,531 | INFO     | -- intersect: 30638282744.767796
[2025-06-03 23:20:38] 2025-06-03 19:08:04,531 | INFO     | intersect: 30638282744.767796
[2025-06-03 23:20:38] 2025-06-03 19:08:04,531 | INFO     | chi2: 2.6334519807979335
[2025-06-03 23:20:38] 2025-06-03 19:08:04,532 | INFO     | sum of square deviations: 2871616632.5
[2025-06-03 23:20:38] 2025-06-03 19:08:04,533 | INFO     | sum of deviations: -37456833571.99999
[2025-06-03 23:20:38] 2025-06-03 19:08:04,533 | INFO     | mean x: 1748970861.5
[2025-06-03 23:20:38] 2025-06-03 19:08:04,534 | INFO     | mean y: 2544317.0285714287
[2025-06-03 23:20:38] 2025-06-03 19:08:04,534 | INFO     | -- intersect: 22815795131.936207
[2025-06-03 23:20:38] 2025-06-03 19:08:04,534 | INFO     | intersect: 22815795131.936207
[2025-06-03 23:20:38] 2025-06-03 19:08:04,534 | INFO     | chi2: 1.809295619040871
[2025-06-03 23:20:38] 2025-06-03 19:08:04,534 | INFO     | current chi2=1.809295619040871 (change=31.295666971202714 %)
[2025-06-03 23:20:38] 2025-06-03 19:08:04,535 | INFO     | sum of square deviations: 2671343110.0
[2025-06-03 23:20:38] 2025-06-03 19:08:04,536 | INFO     | sum of deviations: -35821800124.999954
[2025-06-03 23:20:38] 2025-06-03 19:08:04,536 | INFO     | mean x: 1748970709.0
[2025-06-03 23:20:38] 2025-06-03 19:08:04,536 | INFO     | mean y: 2545562.2780487803
[2025-06-03 23:20:38] 2025-06-03 19:08:04,537 | INFO     | -- intersect: 23455646336.84589
[2025-06-03 23:20:38] 2025-06-03 19:08:04,537 | INFO     | intersect: 23455646336.84589
[2025-06-03 23:20:38] 2025-06-03 19:08:04,537 | INFO     | chi2: 1.8065551579641146
[2025-06-03 23:20:38] 2025-06-03 19:08:04,537 | INFO     | current chi2=1.8065551579641146 (change=0.15146563380335096 %)
[2025-06-03 23:20:38] 2025-06-03 19:08:04,537 | INFO     | right removable region: 204
[2025-06-03 23:20:38] 2025-06-03 19:08:04,538 | INFO     | sum of square deviations: 2871616632.5
[2025-06-03 23:20:38] 2025-06-03 19:08:04,539 | INFO     | sum of deviations: -88789928752.49998
[2025-06-03 23:20:38] 2025-06-03 19:08:04,540 | INFO     | mean x: 1748971166.5
[2025-06-03 23:20:38] 2025-06-03 19:08:04,540 | INFO     | mean y: 2557546.261904762
[2025-06-03 23:20:38] 2025-06-03 19:08:04,540 | INFO     | -- intersect: 54080467357.12583
[2025-06-03 23:20:38] 2025-06-03 19:08:04,540 | INFO     | intersect: 54080467357.12583
[2025-06-03 23:20:38] 2025-06-03 19:08:04,540 | INFO     | chi2: 1.0677805732726926
[2025-06-03 23:20:38] 2025-06-03 19:08:04,540 | INFO     | current chi2=1.0677805732726926 (change=59.45319751191529 %)
[2025-06-03 23:20:38] 2025-06-03 19:08:04,541 | INFO     | sum of square deviations: 2671343110.0
[2025-06-03 23:20:38] 2025-06-03 19:08:04,542 | INFO     | sum of deviations: -86098445607.99998
[2025-06-03 23:20:38] 2025-06-03 19:08:04,542 | INFO     | mean x: 1748971319.0
[2025-06-03 23:20:38] 2025-06-03 19:08:04,543 | INFO     | mean y: 2555467.6146341464
[2025-06-03 23:20:38] 2025-06-03 19:08:04,543 | INFO     | -- intersect: 56372593226.962395
[2025-06-03 23:20:38] 2025-06-03 19:08:04,543 | INFO     | intersect: 56372593226.962395
[2025-06-03 23:20:38] 2025-06-03 19:08:04,543 | INFO     | chi2: 1.0542960053488681
[2025-06-03 23:20:38] 2025-06-03 19:08:04,543 | INFO     | current chi2=1.0542960053488681 (change=1.2628594545876553 %)
[2025-06-03 23:20:38] 2025-06-03 19:08:04,543 | INFO     | left removable region: 20
[2025-06-03 23:20:38] 2025-06-03 19:08:04,544 | INFO     | sum of square deviations: 1931608310.0
[2025-06-03 23:20:38] 2025-06-03 19:08:04,545 | INFO     | sum of deviations: -56285580290.999985
[2025-06-03 23:20:38] 2025-06-03 19:08:04,545 | INFO     | mean x: 1748971288.5
[2025-06-03 23:20:38] 2025-06-03 19:08:04,545 | INFO     | mean y: 2561021.3260869565
[2025-06-03 23:20:38] 2025-06-03 19:08:04,545 | INFO     | -- intersect: 50966238996.76431
[2025-06-03 23:20:38] 2025-06-03 19:08:04,545 | INFO     | intersect: 50966238996.76431
[2025-06-03 23:20:38] 2025-06-03 19:08:04,546 | INFO     | chi2: 0.19047775719121218
[2025-06-03 23:20:38] 2025-06-03 19:08:04,546 | INFO     | -- intersect: 50966238996.76431
[2025-06-03 23:20:38] 2025-06-03 19:08:04,546 | INFO     | current memory leak: -29.14 B/s (using 184 data points, chi2=0.19)
[2025-06-03 23:20:38] 2025-06-03 19:08:04,547 | INFO     | ..............................
[2025-06-03 23:20:38] 2025-06-03 19:08:04,547 | INFO     | . Timing measurements:
[2025-06-03 23:20:38] 2025-06-03 19:08:04,547 | INFO     | . get job = 0 s
[2025-06-03 23:20:38] 2025-06-03 19:08:04,547 | INFO     | . initial setup = 3 s
[2025-06-03 23:20:38] 2025-06-03 19:08:04,547 | INFO     | . payload setup = 13 s
[2025-06-03 23:20:38] 2025-06-03 19:08:04,547 | INFO     | . stage-in = 0 s
[2025-06-03 23:20:38] 2025-06-03 19:08:04,547 | INFO     | . payload execution = 13128 s
[2025-06-03 23:20:38] 2025-06-03 19:08:04,547 | INFO     | . stage-out = 3 s
[2025-06-03 23:20:38] 2025-06-03 19:08:04,547 | INFO     | . log creation = 1 s
[2025-06-03 23:20:38] 2025-06-03 19:08:04,547 | INFO     | ..............................
[2025-06-03 23:20:38] 2025-06-03 19:08:05,023 | INFO     | 
[2025-06-03 23:20:38] 2025-06-03 19:08:05,023 | INFO     | job summary report
[2025-06-03 23:20:38] 2025-06-03 19:08:05,023 | INFO     | --------------------------------------------------
[2025-06-03 23:20:38] 2025-06-03 19:08:05,023 | INFO     | PanDA job id: 6677420940
[2025-06-03 23:20:38] 2025-06-03 19:08:05,023 | INFO     | task id: 45006595
[2025-06-03 23:20:38] 2025-06-03 19:08:05,023 | INFO     | errors: (none)
[2025-06-03 23:20:38] 2025-06-03 19:08:05,024 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 23:20:38] 2025-06-03 19:08:05,024 | INFO     | pilot state: finished 
[2025-06-03 23:20:38] 2025-06-03 19:08:05,024 | INFO     | transexitcode: 0
[2025-06-03 23:20:38] 2025-06-03 19:08:05,024 | INFO     | exeerrorcode: 0
[2025-06-03 23:20:38] 2025-06-03 19:08:05,024 | INFO     | exeerrordiag: 
[2025-06-03 23:20:38] 2025-06-03 19:08:05,024 | INFO     | exitcode: 0
[2025-06-03 23:20:38] 2025-06-03 19:08:05,024 | INFO     | exitmsg: OK
[2025-06-03 23:20:38] 2025-06-03 19:08:05,024 | INFO     | cpuconsumptiontime: 48689 s
[2025-06-03 23:20:38] 2025-06-03 19:08:05,024 | INFO     | nevents: 400
[2025-06-03 23:20:38] 2025-06-03 19:08:05,024 | INFO     | neventsw: 0
[2025-06-03 23:20:38] 2025-06-03 19:08:05,024 | INFO     | pid: 23404
[2025-06-03 23:20:38] 2025-06-03 19:08:05,025 | INFO     | pgrp: 23404
[2025-06-03 23:20:38] 2025-06-03 19:08:05,025 | INFO     | corecount: 8
[2025-06-03 23:20:38] 2025-06-03 19:08:05,025 | INFO     | event service: False
[2025-06-03 23:20:38] 2025-06-03 19:08:05,025 | INFO     | sizes: {0: 2405012, 1: 2405211, 2: 2405211, 12: 2405473, 13146: 2435096, 13150: 2444039, 13152: 2444223, 13232: 2444393}
[2025-06-03 23:20:38] 2025-06-03 19:08:05,025 | INFO     | --------------------------------------------------
[2025-06-03 23:20:38] 2025-06-03 19:08:05,025 | INFO     | 
[2025-06-03 23:20:38] 2025-06-03 19:08:05,025 | INFO     | executing command: ls -lF /var/lib/boinc/slots/21
[2025-06-03 23:20:38] 2025-06-03 19:08:05,466 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 23:20:38] 2025-06-03 19:08:05,467 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 23:20:38] 2025-06-03 19:08:05,467 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 23:20:38] 2025-06-03 19:08:05,467 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 23:20:38] 2025-06-03 19:08:05,467 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 23:20:38] 2025-06-03 19:08:05,467 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 23:20:38] 2025-06-03 19:08:05,467 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 23:20:38] 2025-06-03 19:08:05,467 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 23:20:38] 2025-06-03 19:08:05,467 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 23:20:38] 2025-06-03 19:08:05,468 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 23:20:38] 2025-06-03 19:08:05,468 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 23:20:38] 2025-06-03 19:08:05,468 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 23:20:38] 2025-06-03 19:08:05,468 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 23:20:38] 2025-06-03 19:08:05,468 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 23:20:38] 2025-06-03 19:08:05,468 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 23:20:38] 2025-06-03 19:08:05,468 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 23:20:38] 2025-06-03 19:08:05,468 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 23:20:38] 2025-06-03 19:08:05,469 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 23:20:38] 2025-06-03 19:08:05,469 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 23:20:38] 2025-06-03 19:08:05,469 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 23:20:38] 2025-06-03 19:08:05,469 | INFO     | job 6677420940 has completed (purged errors)
[2025-06-03 23:20:38] 2025-06-03 19:08:05,469 | INFO     | overall cleanup function is called
[2025-06-03 23:20:38] 2025-06-03 19:08:06,478 | INFO     | --- collectZombieJob: --- 10, [23404]
[2025-06-03 23:20:38] 2025-06-03 19:08:06,478 | INFO     | zombie collector waiting for pid 23404
[2025-06-03 23:20:38] 2025-06-03 19:08:06,478 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 23:20:38] 2025-06-03 19:08:06,478 | INFO     | collected zombie processes
[2025-06-03 23:20:38] 2025-06-03 19:08:06,478 | INFO     | will attempt to kill all subprocesses of pid=23404
[2025-06-03 23:20:38] 2025-06-03 19:08:06,610 | INFO     | process IDs to be killed: [23404] (in reverse order)
[2025-06-03 23:20:38] 2025-06-03 19:08:07,090 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 23:20:38] 2025-06-03 19:08:07,091 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 23:20:38] 2025-06-03 19:08:07,094 | INFO     | did not find any defunct processes belonging to 23404
[2025-06-03 23:20:38] 2025-06-03 19:08:07,098 | INFO     | did not find any defunct processes belonging to 23404
[2025-06-03 23:20:38] 2025-06-03 19:08:07,099 | INFO     | ready for new job
[2025-06-03 23:20:38] 2025-06-03 19:08:07,099 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 23:20:38] 2025-06-03 19:08:07,101 | INFO     | **************************************
[2025-06-03 23:20:38] 2025-06-03 19:08:07,101 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 23:20:38] 2025-06-03 19:08:07,101 | INFO     | **************************************
[2025-06-03 23:20:38] 2025-06-03 19:08:07,101 | INFO     | 
[2025-06-03 23:20:38] 2025-06-03 19:08:07,102 | INFO     | pilot is running in a VM
[2025-06-03 23:20:38] 2025-06-03 19:08:07,102 | INFO     | architecture information:
[2025-06-03 23:20:38] 2025-06-03 19:08:07,103 | INFO     | executing command: cat /etc/os-release
[2025-06-03 23:20:38] 2025-06-03 19:08:07,140 | INFO     | cat /etc/os-release:
[2025-06-03 23:20:38] NAME="CentOS Linux"
[2025-06-03 23:20:38] VERSION="7 (Core)"
[2025-06-03 23:20:38] ID="centos"
[2025-06-03 23:20:38] ID_LIKE="rhel fedora"
[2025-06-03 23:20:38] VERSION_ID="7"
[2025-06-03 23:20:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 23:20:38] ANSI_COLOR="0;31"
[2025-06-03 23:20:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 23:20:38] HOME_URL="https://www.centos.org/"
[2025-06-03 23:20:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 23:20:38] 
[2025-06-03 23:20:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 23:20:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 23:20:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 23:20:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 23:20:38] 
[2025-06-03 23:20:38] 2025-06-03 19:08:07,140 | INFO     | **************************************
[2025-06-03 23:20:38] 2025-06-03 19:08:07,644 | INFO     | executing command: df -mP /var/lib/boinc/slots/21
[2025-06-03 23:20:38] 2025-06-03 19:08:07,669 | INFO     | sufficient remaining disk space (497205379072 B)
[2025-06-03 23:20:38] 2025-06-03 19:08:07,669 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 23:20:38] 2025-06-03 19:08:07,670 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 23:20:38] 2025-06-03 19:08:07,670 | INFO     | update_server=False
[2025-06-03 23:20:38] 2025-06-03 19:08:07,670 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 23:20:38] 2025-06-03 19:08:07,670 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 23:20:38] 2025-06-03 19:08:07,670 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:20:38] 2025-06-03 19:08:07,671 | INFO     | aborting loop
[2025-06-03 23:20:38] 2025-06-03 19:08:07,712 | INFO     | all job control threads have been joined
[2025-06-03 23:20:38] 2025-06-03 19:08:08,134 | INFO     | all data control threads have been joined
[2025-06-03 23:20:38] 2025-06-03 19:08:08,270 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 23:20:38] 2025-06-03 19:08:08,270 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 23:20:38] 2025-06-03 19:08:08,270 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 23:20:38] 2025-06-03 19:08:08,425 | INFO     | all payload control threads have been joined
[2025-06-03 23:20:38] 2025-06-03 19:08:08,674 | INFO     | [job] retrieve thread has finished
[2025-06-03 23:20:38] 2025-06-03 19:08:08,675 | INFO     | [job] job monitor thread has finished
[2025-06-03 23:20:38] 2025-06-03 19:08:08,685 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 23:20:38] 2025-06-03 19:08:08,717 | INFO     | [job] control thread has finished
[2025-06-03 23:20:38] 2025-06-03 19:08:08,752 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 23:20:38] 2025-06-03 19:08:08,753 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 23:20:38] 2025-06-03 19:08:08,969 | INFO     | [payload] failed_post thread has finished
[2025-06-03 23:20:38] 2025-06-03 19:08:09,140 | INFO     | [data] control thread has finished
[2025-06-03 23:20:38] 2025-06-03 19:08:09,285 | INFO     | [data] copytool_in thread has finished
[2025-06-03 23:20:38] 2025-06-03 19:08:09,324 | INFO     | [job] validate thread has finished
[2025-06-03 23:20:38] 2025-06-03 19:08:09,398 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 23:20:38] 2025-06-03 19:08:09,431 | INFO     | [payload] control thread has finished
[2025-06-03 23:20:38] 2025-06-03 19:08:09,690 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:20:38] 2025-06-03 19:08:10,014 | INFO     | [payload] validate_post thread has finished
[2025-06-03 23:20:38] 2025-06-03 19:08:10,143 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 23:20:38] 2025-06-03 19:08:10,692 | INFO     | [data] copytool_out thread has finished
[2025-06-03 23:20:38] 2025-06-03 19:08:10,696 | INFO     | [job] queue monitor thread has finished
[2025-06-03 23:20:38] 2025-06-03 19:08:11,679 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 23:20:38] 2025-06-03 19:08:12,276 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140117501286208)>', '<ExcThread(monitor, started 140116932687616)>']
[2025-06-03 23:20:38] 2025-06-03 19:08:12,294 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 23:20:38] 2025-06-03 19:08:12,294 | INFO     | [monitor] control thread has ended
[2025-06-03 23:20:38] 2025-06-03 19:08:17,302 | INFO     | all workflow threads have been joined
[2025-06-03 23:20:38] 2025-06-03 19:08:17,302 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 23:20:38] 2025-06-03 19:08:17,302 | INFO     | traces error code: 0
[2025-06-03 23:20:38] 2025-06-03 19:08:17,303 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 23:20:38] 2025-06-03 19:08:17,539 [wrapper] ==== pilot stdout END ====
[2025-06-03 23:20:38] 2025-06-03 19:08:17,561 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 23:20:38] 2025-06-03 19:08:17,609 [wrapper] pilotpid: 14856
[2025-06-03 23:20:38] 2025-06-03 19:08:17,624 [wrapper] Pilot exit status: 0
[2025-06-03 23:20:38] 2025-06-03 19:08:17,744 [wrapper] pandaids: 6677420940
[2025-06-03 23:20:38] 2025-06-03 19:08:18,553 [wrapper] cleanup supervisor_pilot 11027 14857
[2025-06-03 23:20:38] 2025-06-03 19:08:18,608 [wrapper] Test setup, not cleaning
[2025-06-03 23:20:38] 2025-06-03 19:08:18,657 [wrapper] apfmon messages muted
[2025-06-03 23:20:38] 2025-06-03 19:08:18,661 [wrapper] ==== wrapper stdout END ====
[2025-06-03 23:20:38] 2025-06-03 19:08:18,669 [wrapper] ==== wrapper stderr END ====
[2025-06-03 23:20:38]  *** Error codes and diagnostics ***
[2025-06-03 23:20:38]     "exeErrorCode": 0,
[2025-06-03 23:20:38]     "exeErrorDiag": "",
[2025-06-03 23:20:38]     "pilotErrorCode": 0,
[2025-06-03 23:20:38]     "pilotErrorDiag": "",
[2025-06-03 23:20:38]  *** Listing of results directory ***
[2025-06-03 23:20:38] total 388108
[2025-06-03 23:20:38] -rw-r--r--. 1 boinc boinc    495897 Jun  3 01:50 pilot3.tar.gz
[2025-06-03 23:20:38] -rw-r--r--. 1 boinc boinc      5111 Jun  3 02:17 queuedata.json
[2025-06-03 23:20:38] -rwx------. 1 boinc boinc     37140 Jun  3 02:18 runpilot2-wrapper.sh
[2025-06-03 23:20:38] -rw-r--r--. 1 boinc boinc       100 Jun  3 17:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 23:20:38] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 17:26 run_atlas
[2025-06-03 23:20:38] -rw-r--r--. 1 boinc boinc       105 Jun  3 17:26 job.xml
[2025-06-03 23:20:38] -rw-r--r--. 1 boinc boinc      6393 Jun  3 17:26 init_data.xml
[2025-06-03 23:20:38] -rw-r--r--. 2 boinc boinc 213897130 Jun  3 17:26 EVNT.45006593._000598.pool.root.1
[2025-06-03 23:20:38] -rw-r--r--. 2 boinc boinc     15093 Jun  3 17:26 start_atlas.sh
[2025-06-03 23:20:38] drwxrwx--x. 2 boinc boinc        68 Jun  3 17:26 shared
[2025-06-03 23:20:38] -rw-r--r--. 2 boinc boinc    508882 Jun  3 17:26 input.tar.gz
[2025-06-03 23:20:38] -rw-r--r--. 1 boinc boinc         0 Jun  3 17:26 boinc_lockfile
[2025-06-03 23:20:38] -rw-r--r--. 1 boinc boinc      2524 Jun  3 17:26 pandaJob.out
[2025-06-03 23:20:38] -rw-------. 1 boinc boinc    982716 Jun  3 17:27 agis_schedconf.cvmfs.json
[2025-06-03 23:20:38] drwx------. 4 boinc boinc      4096 Jun  3 17:27 pilot3
[2025-06-03 23:20:38] -rw-------. 1 boinc boinc 176673214 Jun  3 21:05 HITS.45006595._014931.pool.root.1
[2025-06-03 23:20:38] -rw-r--r--. 1 boinc boinc       531 Jun  3 21:05 boinc_task_state.xml
[2025-06-03 23:20:38] -rw-------. 1 boinc boinc      1020 Jun  3 21:06 memory_monitor_summary.json
[2025-06-03 23:20:38] -rw-------. 1 boinc boinc   1603667 Jun  3 21:06 agis_ddmendpoints.agis.ALL.json
[2025-06-03 23:20:38] -rw-------. 1 boinc boinc    367886 Jun  3 21:06 log.45006595._014931.job.log.tgz.1
[2025-06-03 23:20:38] -rw-------. 1 boinc boinc        95 Jun  3 21:07 pilot_heartbeat.json
[2025-06-03 23:20:38] -rw-------. 1 boinc boinc      7694 Jun  3 21:08 heartbeat.json
[2025-06-03 23:20:38] -rw-------. 1 boinc boinc      4417 Jun  3 21:08 pilotlog.txt
[2025-06-03 23:20:38] -rw-------. 1 boinc boinc   1153198 Jun  3 21:08 log.45006595._014931.job.log.1
[2025-06-03 23:20:38] -rw-------. 1 boinc boinc       357 Jun  3 21:08 output.list
[2025-06-03 23:20:38] -rw-r--r--. 1 boinc boinc       620 Jun  3 21:08 runtime_log
[2025-06-03 23:20:38] -rw-------. 1 boinc boinc   1536000 Jun  3 21:08 result.tar.gz
[2025-06-03 23:20:38] -rw-r--r--. 1 boinc boinc      8673 Jun  3 21:08 runtime_log.err
[2025-06-03 23:20:38] -rw-------. 1 boinc boinc       656 Jun  3 21:08 FKTLDmMXUg7n9Rq4apOajLDm4fhM0noT9bVof3QYDm5uWKDmam7ZBn.diag
[2025-06-03 23:20:38] -rw-r--r--. 1 boinc boinc      8192 Jun  3 23:20 boinc_mmap_file
[2025-06-03 23:20:38] -rw-r--r--. 1 boinc boinc        28 Jun  3 23:20 wrapper_checkpoint.txt
[2025-06-03 23:20:38] -rw-r--r--. 1 boinc boinc     20504 Jun  3 23:20 stderr.txt
[2025-06-03 23:20:38] HITS file was successfully produced:
[2025-06-03 23:20:38] -rw-------. 1 boinc boinc 176673214 Jun  3 21:05 shared/HITS.pool.root.1
[2025-06-03 23:20:38]  *** Contents of shared directory: ***
[2025-06-03 23:20:38] total 383436
[2025-06-03 23:20:38] -rw-r--r--. 2 boinc boinc 213897130 Jun  3 17:26 ATLAS.root_0
[2025-06-03 23:20:38] -rw-r--r--. 2 boinc boinc     15093 Jun  3 17:26 start_atlas.sh
[2025-06-03 23:20:38] -rw-r--r--. 2 boinc boinc    508882 Jun  3 17:26 input.tar.gz
[2025-06-03 23:20:38] -rw-------. 1 boinc boinc 176673214 Jun  3 21:05 HITS.pool.root.1
[2025-06-03 23:20:38] -rw-------. 1 boinc boinc   1536000 Jun  3 21:08 result.tar.gz
23:20:40 (11118): run_atlas exited; CPU time 48859.350277
23:20:40 (11118): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN