Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:53:25 (27593): wrapper (7.7.26015): starting
02:53:25 (27593): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 02:53:25] Arguments: --nthreads 8
[2025-06-03 02:53:25] Threads: 8
[2025-06-03 02:53:25] Checking for CVMFS
[2025-06-03 02:53:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 02:53:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 02:53:26] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 02:53:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 02:53:26] 2.11.2.0 3101 9663 68340 146733 2 58 20269411 20275200 1 130560 0 3055340 99.984 1603895 34277 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-03 02:53:26] CVMFS is ok
[2025-06-03 02:53:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 02:53:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 02:53:26] Further information can be found at the LHC@home message board.
[2025-06-03 02:53:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 02:53:26] Checking for apptainer binary...
[2025-06-03 02:53:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 02:53:26] Running /usr/bin/apptainer --version
[2025-06-03 02:53:26] apptainer version 1.3.2-1.el7
[2025-06-03 02:53:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 02:53:27] c-204-29.aglt2.org
[2025-06-03 02:53:27] apptainer works
[2025-06-03 02:53:27] Set ATHENA_PROC_NUMBER=8
[2025-06-03 02:53:27] Set ATHENA_CORE_NUMBER=8
[2025-06-03 02:53:27] Starting ATLAS job with PandaID=6677402059
[2025-06-03 02:53:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 04:45:34]  *** The last 200 lines of the pilot log: ***
[2025-06-03 04:45:34] 2025-06-03 08:45:08,090 | INFO     | monitor loop #496: job 0:6677402059 is in state 'finished'
[2025-06-03 04:45:34] 2025-06-03 08:45:08,090 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 04:45:34] 2025-06-03 08:45:10,593 | INFO     | monitor loop #497: job 0:6677402059 is in state 'finished'
[2025-06-03 04:45:34] 2025-06-03 08:45:10,593 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 04:45:34] 2025-06-03 08:45:13,097 | INFO     | monitor loop #498: job 0:6677402059 is in state 'finished'
[2025-06-03 04:45:34] 2025-06-03 08:45:13,097 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 04:45:34] 2025-06-03 08:45:13,648 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-03 04:45:34] 2025-06-03 08:45:13,649 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677402059/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 04:45:34] 2025-06-03 08:45:13,650 | INFO     | extracted standard info from prmon json
[2025-06-03 04:45:34] 2025-06-03 08:45:13,650 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 04:45:34] 2025-06-03 08:45:13,650 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 04:45:34] 2025-06-03 08:45:13,651 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 04:45:34] 2025-06-03 08:45:13,651 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 04:45:34] 2025-06-03 08:45:13,656 | INFO     | fitting pss+swap vs Time
[2025-06-03 04:45:34] 2025-06-03 08:45:13,656 | INFO     | sum of square deviations: 401533110.0
[2025-06-03 04:45:34] 2025-06-03 08:45:13,656 | INFO     | sum of deviations: 9203504564.0
[2025-06-03 04:45:34] 2025-06-03 08:45:13,657 | INFO     | mean x: 1748936951.0
[2025-06-03 04:45:34] 2025-06-03 08:45:13,657 | INFO     | mean y: 2492822.211009174
[2025-06-03 04:45:34] 2025-06-03 08:45:13,657 | INFO     | -- intersect: -40084734880.32327
[2025-06-03 04:45:34] 2025-06-03 08:45:13,657 | INFO     | intersect: -40084734880.32327
[2025-06-03 04:45:34] 2025-06-03 08:45:13,657 | INFO     | chi2: 1.527683552986645
[2025-06-03 04:45:34] 2025-06-03 08:45:13,658 | INFO     | sum of square deviations: 348769330.0
[2025-06-03 04:45:34] 2025-06-03 08:45:13,658 | INFO     | sum of deviations: 8841895679.5
[2025-06-03 04:45:34] 2025-06-03 08:45:13,658 | INFO     | mean x: 1748936798.5
[2025-06-03 04:45:34] 2025-06-03 08:45:13,659 | INFO     | mean y: 2491776.375
[2025-06-03 04:45:34] 2025-06-03 08:45:13,659 | INFO     | -- intersect: -44336030542.5907
[2025-06-03 04:45:34] 2025-06-03 08:45:13,659 | INFO     | intersect: -44336030542.5907
[2025-06-03 04:45:34] 2025-06-03 08:45:13,659 | INFO     | chi2: 1.5309531930348244
[2025-06-03 04:45:34] 2025-06-03 08:45:13,659 | INFO     | current chi2=1.5309531930348244 (change=-0.21402600308075026 %)
[2025-06-03 04:45:34] 2025-06-03 08:45:13,659 | INFO     | right removable region: 103
[2025-06-03 04:45:34] 2025-06-03 08:45:13,660 | INFO     | sum of square deviations: 348769330.0
[2025-06-03 04:45:34] 2025-06-03 08:45:13,660 | INFO     | sum of deviations: -6542550333.5
[2025-06-03 04:45:34] 2025-06-03 08:45:13,660 | INFO     | mean x: 1748937103.5
[2025-06-03 04:45:34] 2025-06-03 08:45:13,660 | INFO     | mean y: 2537326.6826923075
[2025-06-03 04:45:34] 2025-06-03 08:45:13,661 | INFO     | -- intersect: 32810780613.942066
[2025-06-03 04:45:34] 2025-06-03 08:45:13,661 | INFO     | intersect: 32810780613.942066
[2025-06-03 04:45:34] 2025-06-03 08:45:13,661 | INFO     | chi2: 0.09482201288467278
[2025-06-03 04:45:34] 2025-06-03 08:45:13,661 | INFO     | current chi2=0.09482201288467278 (change=93.79308543976308 %)
[2025-06-03 04:45:34] 2025-06-03 08:45:13,661 | INFO     | sum of square deviations: 300842850.0
[2025-06-03 04:45:34] 2025-06-03 08:45:13,662 | INFO     | sum of deviations: -6462262469.0
[2025-06-03 04:45:34] 2025-06-03 08:45:13,662 | INFO     | mean x: 1748937256.0
[2025-06-03 04:45:34] 2025-06-03 08:45:13,662 | INFO     | mean y: 2536905.262626263
[2025-06-03 04:45:34] 2025-06-03 08:45:13,662 | INFO     | -- intersect: 37570627986.98402
[2025-06-03 04:45:34] 2025-06-03 08:45:13,662 | INFO     | intersect: 37570627986.98402
[2025-06-03 04:45:34] 2025-06-03 08:45:13,662 | INFO     | chi2: 0.07807288124183373
[2025-06-03 04:45:34] 2025-06-03 08:45:13,663 | INFO     | current chi2=0.07807288124183373 (change=17.663758797453678 %)
[2025-06-03 04:45:34] 2025-06-03 08:45:13,663 | INFO     | left removable region: 20
[2025-06-03 04:45:34] 2025-06-03 08:45:13,663 | INFO     | sum of square deviations: 177275882.0
[2025-06-03 04:45:34] 2025-06-03 08:45:13,663 | INFO     | sum of deviations: 330929697.00000006
[2025-06-03 04:45:34] 2025-06-03 08:45:13,663 | INFO     | mean x: 1748937378.0
[2025-06-03 04:45:34] 2025-06-03 08:45:13,664 | INFO     | mean y: 2511120.012048193
[2025-06-03 04:45:34] 2025-06-03 08:45:13,664 | INFO     | -- intersect: -3262317180.622296
[2025-06-03 04:45:34] 2025-06-03 08:45:13,664 | INFO     | intersect: -3262317180.622296
[2025-06-03 04:45:34] 2025-06-03 08:45:13,664 | INFO     | chi2: 0.012986677204162963
[2025-06-03 04:45:34] 2025-06-03 08:45:13,664 | INFO     | -- intersect: -3262317180.622296
[2025-06-03 04:45:34] 2025-06-03 08:45:13,664 | INFO     | current memory leak: 1.87 B/s (using 83 data points, chi2=0.01)
[2025-06-03 04:45:34] 2025-06-03 08:45:13,665 | INFO     | ..............................
[2025-06-03 04:45:34] 2025-06-03 08:45:13,665 | INFO     | . Timing measurements:
[2025-06-03 04:45:34] 2025-06-03 08:45:13,665 | INFO     | . get job = 0 s
[2025-06-03 04:45:34] 2025-06-03 08:45:13,665 | INFO     | . initial setup = 2 s
[2025-06-03 04:45:34] 2025-06-03 08:45:13,665 | INFO     | . payload setup = 11 s
[2025-06-03 04:45:34] 2025-06-03 08:45:13,665 | INFO     | . stage-in = 0 s
[2025-06-03 04:45:34] 2025-06-03 08:45:13,666 | INFO     | . payload execution = 6646 s
[2025-06-03 04:45:34] 2025-06-03 08:45:13,666 | INFO     | . stage-out = 0 s
[2025-06-03 04:45:34] 2025-06-03 08:45:13,666 | INFO     | . log creation = 0 s
[2025-06-03 04:45:34] 2025-06-03 08:45:13,666 | INFO     | ..............................
[2025-06-03 04:45:34] 2025-06-03 08:45:14,208 | INFO     | 
[2025-06-03 04:45:34] 2025-06-03 08:45:14,209 | INFO     | job summary report
[2025-06-03 04:45:34] 2025-06-03 08:45:14,209 | INFO     | --------------------------------------------------
[2025-06-03 04:45:34] 2025-06-03 08:45:14,209 | INFO     | PanDA job id: 6677402059
[2025-06-03 04:45:34] 2025-06-03 08:45:14,209 | INFO     | task id: 45006595
[2025-06-03 04:45:34] 2025-06-03 08:45:14,209 | INFO     | errors: (none)
[2025-06-03 04:45:34] 2025-06-03 08:45:14,209 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 04:45:34] 2025-06-03 08:45:14,210 | INFO     | pilot state: finished 
[2025-06-03 04:45:34] 2025-06-03 08:45:14,210 | INFO     | transexitcode: 0
[2025-06-03 04:45:34] 2025-06-03 08:45:14,210 | INFO     | exeerrorcode: 0
[2025-06-03 04:45:34] 2025-06-03 08:45:14,210 | INFO     | exeerrordiag: 
[2025-06-03 04:45:34] 2025-06-03 08:45:14,210 | INFO     | exitcode: 0
[2025-06-03 04:45:34] 2025-06-03 08:45:14,210 | INFO     | exitmsg: OK
[2025-06-03 04:45:34] 2025-06-03 08:45:14,211 | INFO     | cpuconsumptiontime: 48570 s
[2025-06-03 04:45:34] 2025-06-03 08:45:14,211 | INFO     | nevents: 400
[2025-06-03 04:45:34] 2025-06-03 08:45:14,211 | INFO     | neventsw: 0
[2025-06-03 04:45:34] 2025-06-03 08:45:14,211 | INFO     | pid: 6504
[2025-06-03 04:45:34] 2025-06-03 08:45:14,211 | INFO     | pgrp: 6504
[2025-06-03 04:45:34] 2025-06-03 08:45:14,211 | INFO     | corecount: 8
[2025-06-03 04:45:34] 2025-06-03 08:45:14,212 | INFO     | event service: False
[2025-06-03 04:45:34] 2025-06-03 08:45:14,212 | INFO     | sizes: {0: 2405017, 1: 2405159, 6: 2405365, 11: 2405393, 6662: 2432316, 6664: 2441257, 6665: 2441441, 6674: 2441611}
[2025-06-03 04:45:34] 2025-06-03 08:45:14,212 | INFO     | --------------------------------------------------
[2025-06-03 04:45:34] 2025-06-03 08:45:14,212 | INFO     | 
[2025-06-03 04:45:34] 2025-06-03 08:45:14,212 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-03 04:45:34] 2025-06-03 08:45:14,240 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 04:45:34] 2025-06-03 08:45:14,240 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 04:45:34] 2025-06-03 08:45:14,241 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 04:45:34] 2025-06-03 08:45:14,241 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 04:45:34] 2025-06-03 08:45:14,241 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 04:45:34] 2025-06-03 08:45:14,241 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 04:45:34] 2025-06-03 08:45:14,241 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 04:45:34] 2025-06-03 08:45:14,241 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 04:45:34] 2025-06-03 08:45:14,241 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 04:45:34] 2025-06-03 08:45:14,241 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 04:45:34] 2025-06-03 08:45:14,242 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 04:45:34] 2025-06-03 08:45:14,242 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 04:45:34] 2025-06-03 08:45:14,242 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 04:45:34] 2025-06-03 08:45:14,242 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 04:45:34] 2025-06-03 08:45:14,242 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 04:45:34] 2025-06-03 08:45:14,242 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 04:45:34] 2025-06-03 08:45:14,242 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 04:45:34] 2025-06-03 08:45:14,243 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 04:45:34] 2025-06-03 08:45:14,243 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 04:45:34] 2025-06-03 08:45:14,243 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 04:45:34] 2025-06-03 08:45:14,243 | INFO     | job 6677402059 has completed (purged errors)
[2025-06-03 04:45:34] 2025-06-03 08:45:14,243 | INFO     | overall cleanup function is called
[2025-06-03 04:45:34] 2025-06-03 08:45:15,251 | INFO     | --- collectZombieJob: --- 10, [6504]
[2025-06-03 04:45:34] 2025-06-03 08:45:15,251 | INFO     | zombie collector waiting for pid 6504
[2025-06-03 04:45:34] 2025-06-03 08:45:15,259 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 04:45:34] 2025-06-03 08:45:15,259 | INFO     | collected zombie processes
[2025-06-03 04:45:34] 2025-06-03 08:45:15,259 | INFO     | will attempt to kill all subprocesses of pid=6504
[2025-06-03 04:45:34] 2025-06-03 08:45:15,348 | INFO     | process IDs to be killed: [6504] (in reverse order)
[2025-06-03 04:45:34] 2025-06-03 08:45:15,403 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 04:45:34] 2025-06-03 08:45:15,403 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 04:45:34] 2025-06-03 08:45:15,407 | INFO     | did not find any defunct processes belonging to 6504
[2025-06-03 04:45:34] 2025-06-03 08:45:15,411 | INFO     | did not find any defunct processes belonging to 6504
[2025-06-03 04:45:34] 2025-06-03 08:45:15,411 | INFO     | ready for new job
[2025-06-03 04:45:34] 2025-06-03 08:45:15,411 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 04:45:34] 2025-06-03 08:45:15,413 | INFO     | **************************************
[2025-06-03 04:45:34] 2025-06-03 08:45:15,414 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 04:45:34] 2025-06-03 08:45:15,414 | INFO     | **************************************
[2025-06-03 04:45:34] 2025-06-03 08:45:15,414 | INFO     | 
[2025-06-03 04:45:34] 2025-06-03 08:45:15,414 | INFO     | architecture information:
[2025-06-03 04:45:34] 2025-06-03 08:45:15,415 | INFO     | executing command: cat /etc/os-release
[2025-06-03 04:45:34] 2025-06-03 08:45:15,434 | INFO     | cat /etc/os-release:
[2025-06-03 04:45:34] NAME="CentOS Linux"
[2025-06-03 04:45:34] VERSION="7 (Core)"
[2025-06-03 04:45:34] ID="centos"
[2025-06-03 04:45:34] ID_LIKE="rhel fedora"
[2025-06-03 04:45:34] VERSION_ID="7"
[2025-06-03 04:45:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 04:45:34] ANSI_COLOR="0;31"
[2025-06-03 04:45:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 04:45:34] HOME_URL="https://www.centos.org/"
[2025-06-03 04:45:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 04:45:34] 
[2025-06-03 04:45:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 04:45:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 04:45:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 04:45:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 04:45:34] 
[2025-06-03 04:45:34] 2025-06-03 08:45:15,434 | INFO     | **************************************
[2025-06-03 04:45:34] 2025-06-03 08:45:15,935 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 04:45:34] 2025-06-03 08:45:15,954 | INFO     | sufficient remaining disk space (18632146944 B)
[2025-06-03 04:45:34] 2025-06-03 08:45:15,955 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 04:45:34] 2025-06-03 08:45:15,955 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 04:45:34] 2025-06-03 08:45:15,955 | INFO     | update_server=False
[2025-06-03 04:45:34] 2025-06-03 08:45:15,955 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 04:45:34] 2025-06-03 08:45:15,956 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 04:45:34] 2025-06-03 08:45:16,441 | INFO     | all data control threads have been joined
[2025-06-03 04:45:34] 2025-06-03 08:45:16,603 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 04:45:34] 2025-06-03 08:45:16,604 | INFO     | aborting loop
[2025-06-03 04:45:34] 2025-06-03 08:45:16,629 | INFO     | PID=32272 has CPU usage=8.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-03 04:45:34] 2025-06-03 08:45:16,629 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 04:45:34] 2025-06-03 08:45:16,629 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 04:45:34] 2025-06-03 08:45:16,629 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 04:45:34] 2025-06-03 08:45:16,748 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 04:45:34] 2025-06-03 08:45:16,955 | INFO     | all payload control threads have been joined
[2025-06-03 04:45:34] 2025-06-03 08:45:16,961 | INFO     | [job] retrieve thread has finished
[2025-06-03 04:45:34] 2025-06-03 08:45:16,985 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 04:45:34] 2025-06-03 08:45:16,994 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 04:45:34] 2025-06-03 08:45:17,034 | INFO     | [payload] validate_post thread has finished
[2025-06-03 04:45:34] 2025-06-03 08:45:17,339 | INFO     | all job control threads have been joined
[2025-06-03 04:45:34] 2025-06-03 08:45:17,447 | INFO     | [data] control thread has finished
[2025-06-03 04:45:34] 2025-06-03 08:45:17,535 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 04:45:34] 2025-06-03 08:45:17,537 | INFO     | [payload] failed_post thread has finished
[2025-06-03 04:45:34] 2025-06-03 08:45:17,605 | INFO     | [job] job monitor thread has finished
[2025-06-03 04:45:34] 2025-06-03 08:45:17,960 | INFO     | [payload] control thread has finished
[2025-06-03 04:45:34] 2025-06-03 08:45:17,978 | INFO     | [job] validate thread has finished
[2025-06-03 04:45:34] 2025-06-03 08:45:18,193 | INFO     | [data] copytool_in thread has finished
[2025-06-03 04:45:34] 2025-06-03 08:45:18,344 | INFO     | [job] control thread has finished
[2025-06-03 04:45:34] 2025-06-03 08:45:18,753 | INFO     | [data] copytool_out thread has finished
[2025-06-03 04:45:34] 2025-06-03 08:45:18,781 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 04:45:34] 2025-06-03 08:45:19,786 | INFO     | [job] queue monitor thread has finished
[2025-06-03 04:45:34] 2025-06-03 08:45:19,961 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 04:45:34] 2025-06-03 08:45:26,041 | INFO     | job.realtimelogging is not enabled
[2025-06-03 04:45:34] 2025-06-03 08:45:27,047 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 04:45:34] 2025-06-03 08:45:28,738 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139930977494848)>', '<ExcThread(monitor, started 139929942214400)>']
[2025-06-03 04:45:34] 2025-06-03 08:45:29,696 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 04:45:34] 2025-06-03 08:45:29,696 | INFO     | [monitor] control thread has ended
[2025-06-03 04:45:34] 2025-06-03 08:45:33,761 | INFO     | all workflow threads have been joined
[2025-06-03 04:45:34] 2025-06-03 08:45:33,761 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 04:45:34] 2025-06-03 08:45:33,761 | INFO     | traces error code: 0
[2025-06-03 04:45:34] 2025-06-03 08:45:33,762 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 04:45:34] 2025-06-03 08:45:33,880 [wrapper] ==== pilot stdout END ====
[2025-06-03 04:45:34] 2025-06-03 08:45:33,885 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 04:45:34] 2025-06-03 08:45:33,889 [wrapper] pilotpid: 32272
[2025-06-03 04:45:34] 2025-06-03 08:45:33,894 [wrapper] Pilot exit status: 0
[2025-06-03 04:45:34] 2025-06-03 08:45:33,913 [wrapper] pandaids: 6677402059
[2025-06-03 04:45:34] 2025-06-03 08:45:33,960 [wrapper] cleanup supervisor_pilot 11790 32273
[2025-06-03 04:45:34] 2025-06-03 08:45:33,966 [wrapper] Test setup, not cleaning
[2025-06-03 04:45:34] 2025-06-03 08:45:33,971 [wrapper] apfmon messages muted
[2025-06-03 04:45:34] 2025-06-03 08:45:33,975 [wrapper] ==== wrapper stdout END ====
[2025-06-03 04:45:34] 2025-06-03 08:45:33,980 [wrapper] ==== wrapper stderr END ====
[2025-06-03 04:45:34]  *** Error codes and diagnostics ***
[2025-06-03 04:45:34]     "exeErrorCode": 0,
[2025-06-03 04:45:34]     "exeErrorDiag": "",
[2025-06-03 04:45:34]     "pilotErrorCode": 0,
[2025-06-03 04:45:34]     "pilotErrorDiag": "",
[2025-06-03 04:45:34]  *** Listing of results directory ***
[2025-06-03 04:45:34] total 392016
[2025-06-03 04:45:34] -rw-r--r-- 1 boincer umatlas    495897 Jun  2 17:29 pilot3.tar.gz
[2025-06-03 04:45:34] -rw-r--r-- 1 boincer umatlas      5111 Jun  2 17:33 queuedata.json
[2025-06-03 04:45:34] -rwx------ 1 boincer umatlas     37140 Jun  2 17:35 runpilot2-wrapper.sh
[2025-06-03 04:45:34] -rw-r--r-- 1 boincer umatlas       100 Jun  3 02:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 04:45:34] -rwxr-xr-x 1 boincer umatlas      7986 Jun  3 02:53 run_atlas
[2025-06-03 04:45:34] -rw-r--r-- 1 boincer umatlas       105 Jun  3 02:53 job.xml
[2025-06-03 04:45:34] -rw-r--r-- 2 boincer umatlas 216013278 Jun  3 02:53 EVNT.45006593._000501.pool.root.1
[2025-06-03 04:45:34] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 02:53 start_atlas.sh
[2025-06-03 04:45:34] drwxrwx--x 2 boincer umatlas      4096 Jun  3 02:53 shared
[2025-06-03 04:45:34] -rw-r--r-- 2 boincer umatlas    508875 Jun  3 02:53 input.tar.gz
[2025-06-03 04:45:34] -rw-r--r-- 1 boincer umatlas         0 Jun  3 02:53 boinc_lockfile
[2025-06-03 04:45:34] -rw-r--r-- 1 boincer umatlas      2523 Jun  3 02:53 pandaJob.out
[2025-06-03 04:45:34] -rw------- 1 boincer umatlas    986901 Jun  3 02:53 agis_schedconf.cvmfs.json
[2025-06-03 04:45:34] -rw------- 1 boincer umatlas   1603667 Jun  3 02:53 agis_ddmendpoints.agis.ALL.json
[2025-06-03 04:45:34] drwx------ 4 boincer umatlas      4096 Jun  3 02:53 pilot3
[2025-06-03 04:45:34] -rw-r--r-- 1 boincer umatlas      5824 Jun  3 04:38 init_data.xml
[2025-06-03 04:45:34] -rw------- 1 boincer umatlas 179705093 Jun  3 04:44 HITS.45006595._012513.pool.root.1
[2025-06-03 04:45:34] -rw-r--r-- 1 boincer umatlas       530 Jun  3 04:44 boinc_task_state.xml
[2025-06-03 04:45:34] -rw------- 1 boincer umatlas      1049 Jun  3 04:44 memory_monitor_summary.json
[2025-06-03 04:45:34] -rw------- 1 boincer umatlas    319830 Jun  3 04:45 log.45006595._012513.job.log.tgz.1
[2025-06-03 04:45:34] -rw-r--r-- 1 boincer umatlas      8192 Jun  3 04:45 boinc_mmap_file
[2025-06-03 04:45:34] -rw-r--r-- 1 boincer umatlas        27 Jun  3 04:45 wrapper_checkpoint.txt
[2025-06-03 04:45:34] -rw------- 1 boincer umatlas      7744 Jun  3 04:45 heartbeat.json
[2025-06-03 04:45:34] -rw------- 1 boincer umatlas        95 Jun  3 04:45 pilot_heartbeat.json
[2025-06-03 04:45:34] -rw------- 1 boincer umatlas      4742 Jun  3 04:45 pilotlog.txt
[2025-06-03 04:45:34] -rw------- 1 boincer umatlas    615322 Jun  3 04:45 log.45006595._012513.job.log.1
[2025-06-03 04:45:34] -rw------- 1 boincer umatlas       357 Jun  3 04:45 output.list
[2025-06-03 04:45:34] -rw-r--r-- 1 boincer umatlas       620 Jun  3 04:45 runtime_log
[2025-06-03 04:45:34] -rw------- 1 boincer umatlas    952320 Jun  3 04:45 result.tar.gz
[2025-06-03 04:45:34] -rw-r--r-- 1 boincer umatlas      8659 Jun  3 04:45 runtime_log.err
[2025-06-03 04:45:34] -rw------- 1 boincer umatlas       659 Jun  3 04:45 5SbKDmJzRg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNpgKDmfNG4Bn.diag
[2025-06-03 04:45:34] -rw-r--r-- 1 boincer umatlas     21095 Jun  3 04:45 stderr.txt
[2025-06-03 04:45:34] HITS file was successfully produced:
[2025-06-03 04:45:34] -rw------- 1 boincer umatlas 179705093 Jun  3 04:44 shared/HITS.pool.root.1
[2025-06-03 04:45:34]  *** Contents of shared directory: ***
[2025-06-03 04:45:34] total 387900
[2025-06-03 04:45:34] -rw-r--r-- 2 boincer umatlas 216013278 Jun  3 02:53 ATLAS.root_0
[2025-06-03 04:45:34] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 02:53 start_atlas.sh
[2025-06-03 04:45:34] -rw-r--r-- 2 boincer umatlas    508875 Jun  3 02:53 input.tar.gz
[2025-06-03 04:45:34] -rw------- 1 boincer umatlas 179705093 Jun  3 04:44 HITS.pool.root.1
[2025-06-03 04:45:34] -rw------- 1 boincer umatlas    952320 Jun  3 04:45 result.tar.gz
04:45:36 (27593): run_atlas exited; CPU time 48541.140542
04:45:36 (27593): called boinc_finish(0)

</stderr_txt>
]]>

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