Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
08:23:11 (165256): wrapper (7.7.26015): starting
08:23:11 (165256): wrapper: running run_atlas (--nthreads 4)
[2025-06-03 08:23:11] Arguments: --nthreads 4
[2025-06-03 08:23:11] Threads: 4
[2025-06-03 08:23:11] Checking for CVMFS
[2025-06-03 08:23:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 08:23:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 08:23:11] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 08:23:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 08:23:12] 2.12.7.0 3403740 798 70472 146729 2 187 8171923 10240000 1822 130560 0 2676691 99.998 219831 674 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2025-06-03 08:23:12] CVMFS is ok
[2025-06-03 08:23:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 08:23:12] Checking for apptainer binary...
[2025-06-03 08:23:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 08:23:12] Running /usr/bin/apptainer --version
[2025-06-03 08:23:12] apptainer version 1.3.4
[2025-06-03 08:23:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 08:23:12] julianvlneu
[2025-06-03 08:23:12] apptainer works
[2025-06-03 08:23:12] Set ATHENA_PROC_NUMBER=4
[2025-06-03 08:23:12] Set ATHENA_CORE_NUMBER=4
[2025-06-03 08:23:12] Starting ATLAS job with PandaID=6677419600
[2025-06-03 08:23:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 09:07:11]  *** The last 200 lines of the pilot log: ***
[2025-06-03 09:07:11]  is_tar=False
[2025-06-03 09:07:11]  lfn=log.45006595._014270.job.log.tgz.1
[2025-06-03 09:07:11]  mtime=0
[2025-06-03 09:07:11]  protocol_id=None
[2025-06-03 09:07:11]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 09:07:11]  replicas=None
[2025-06-03 09:07:11]  scope=mc23_13p6TeV
[2025-06-03 09:07:11]  status=None
[2025-06-03 09:07:11]  status_code=0
[2025-06-03 09:07:11]  storage_token=
[2025-06-03 09:07:11]  surl=/var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6677419600/log.45006595._014270.job.log.tgz.1
[2025-06-03 09:07:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/48/6c/log.45006595._014270.job.log.tgz.1
[2025-06-03 09:07:11]  workdir=None
[2025-06-03 09:07:11] ]
[2025-06-03 09:07:11] 2025-06-03 07:06:42,692 | INFO     | transferring file log.45006595._014270.job.log.tgz.1 from /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6677419600/log.45006595._014270.job.log.tgz.1 to /var/li
[2025-06-03 09:07:11] 2025-06-03 07:06:42,692 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6677419600/log.45006595._014270.job.log.tgz.1 /var/lib/boinc_data/boinc-01/slot
[2025-06-03 09:07:11] 2025-06-03 07:06:42,713 | INFO     | adding to output.list: log.45006595._014270.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/48/6c/log.45006595._014270.job.log.tg
[2025-06-03 09:07:11] 2025-06-03 07:06:42,714 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 09:07:11] 2025-06-03 07:06:42,714 | INFO     | summary of transferred files:
[2025-06-03 09:07:11] 2025-06-03 07:06:42,714 | INFO     |  -- lfn=log.45006595._014270.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 09:07:11] 2025-06-03 07:06:42,714 | INFO     | stage-out finished correctly
[2025-06-03 09:07:11] 2025-06-03 07:06:43,251 | INFO     | monitor loop #202: job 0:6677419600 is in state 'finished'
[2025-06-03 09:07:11] 2025-06-03 07:06:43,251 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 09:07:11] 2025-06-03 07:06:45,582 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 09:07:11] 2025-06-03 07:06:45,756 | INFO     | monitor loop #203: job 0:6677419600 is in state 'finished'
[2025-06-03 09:07:11] 2025-06-03 07:06:45,756 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 09:07:11] 2025-06-03 07:06:46,912 | INFO     | job 6677419600 has state=finished
[2025-06-03 09:07:11] 2025-06-03 07:06:46,912 | INFO     | preparing for final server update for job 6677419600 in state='finished'
[2025-06-03 09:07:11] 2025-06-03 07:06:46,913 | INFO     | this job has now completed (state=finished)
[2025-06-03 09:07:11] 2025-06-03 07:06:46,913 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 09:07:11] 2025-06-03 07:06:46,913 | INFO     | log transfer has been attempted: DONE
[2025-06-03 09:07:11] 2025-06-03 07:06:46,913 | INFO     | job 6677419600 has finished - writing final server update
[2025-06-03 09:07:11] 2025-06-03 07:06:46,913 | INFO     | total number of processed events: 400 (read)
[2025-06-03 09:07:11] 2025-06-03 07:06:46,914 | INFO     | executing command: lscpu
[2025-06-03 09:07:11] 2025-06-03 07:06:46,938 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 09:07:11] 2025-06-03 07:06:48,259 | INFO     | monitor loop #204: job 0:6677419600 is in state 'finished'
[2025-06-03 09:07:11] 2025-06-03 07:06:48,260 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 09:07:11] 2025-06-03 07:06:50,763 | INFO     | monitor loop #205: job 0:6677419600 is in state 'finished'
[2025-06-03 09:07:11] 2025-06-03 07:06:50,763 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 09:07:11] 2025-06-03 07:06:51,896 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-03 09:07:11] 2025-06-03 07:06:51,896 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6677419600/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 09:07:11] 2025-06-03 07:06:51,897 | INFO     | extracted standard info from prmon json
[2025-06-03 09:07:11] 2025-06-03 07:06:51,897 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 09:07:11] 2025-06-03 07:06:51,897 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 09:07:11] 2025-06-03 07:06:51,897 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 09:07:11] 2025-06-03 07:06:51,897 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 09:07:11] 2025-06-03 07:06:51,898 | INFO     | fitting pss+swap vs Time
[2025-06-03 09:07:11] 2025-06-03 07:06:51,898 | INFO     | sum of square deviations: 14456085.0
[2025-06-03 09:07:11] 2025-06-03 07:06:51,898 | INFO     | sum of deviations: -659898671.0
[2025-06-03 09:07:11] 2025-06-03 07:06:51,898 | INFO     | mean x: 1748933208.5
[2025-06-03 09:07:11] 2025-06-03 07:06:51,898 | INFO     | mean y: 2420555.277777778
[2025-06-03 09:07:11] 2025-06-03 07:06:51,898 | INFO     | -- intersect: 79838607182.35667
[2025-06-03 09:07:11] 2025-06-03 07:06:51,898 | INFO     | intersect: 79838607182.35667
[2025-06-03 09:07:11] 2025-06-03 07:06:51,898 | INFO     | chi2: 0.004259160891608205
[2025-06-03 09:07:11] 2025-06-03 07:06:51,898 | INFO     | -- intersect: 79838607182.35667
[2025-06-03 09:07:11] 2025-06-03 07:06:51,898 | INFO     | current memory leak: -45.65 B/s (using 36 data points, chi2=0.00)
[2025-06-03 09:07:11] 2025-06-03 07:06:51,899 | INFO     | ..............................
[2025-06-03 09:07:11] 2025-06-03 07:06:51,899 | INFO     | . Timing measurements:
[2025-06-03 09:07:11] 2025-06-03 07:06:51,899 | INFO     | . get job = 0 s
[2025-06-03 09:07:11] 2025-06-03 07:06:51,899 | INFO     | . initial setup = 1 s
[2025-06-03 09:07:11] 2025-06-03 07:06:51,899 | INFO     | . payload setup = 9 s
[2025-06-03 09:07:11] 2025-06-03 07:06:51,899 | INFO     | . stage-in = 0 s
[2025-06-03 09:07:11] 2025-06-03 07:06:51,899 | INFO     | . payload execution = 2569 s
[2025-06-03 09:07:11] 2025-06-03 07:06:51,899 | INFO     | . stage-out = 0 s
[2025-06-03 09:07:11] 2025-06-03 07:06:51,899 | INFO     | . log creation = 0 s
[2025-06-03 09:07:11] 2025-06-03 07:06:51,899 | INFO     | ..............................
[2025-06-03 09:07:11] 2025-06-03 07:06:51,929 | INFO     | 
[2025-06-03 09:07:11] 2025-06-03 07:06:51,929 | INFO     | job summary report
[2025-06-03 09:07:11] 2025-06-03 07:06:51,929 | INFO     | --------------------------------------------------
[2025-06-03 09:07:11] 2025-06-03 07:06:51,930 | INFO     | PanDA job id: 6677419600
[2025-06-03 09:07:11] 2025-06-03 07:06:51,930 | INFO     | task id: 45006595
[2025-06-03 09:07:11] 2025-06-03 07:06:51,930 | INFO     | errors: (none)
[2025-06-03 09:07:11] 2025-06-03 07:06:51,930 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 09:07:11] 2025-06-03 07:06:51,930 | INFO     | pilot state: finished 
[2025-06-03 09:07:11] 2025-06-03 07:06:51,930 | INFO     | transexitcode: 0
[2025-06-03 09:07:11] 2025-06-03 07:06:51,930 | INFO     | exeerrorcode: 0
[2025-06-03 09:07:11] 2025-06-03 07:06:51,930 | INFO     | exeerrordiag: 
[2025-06-03 09:07:11] 2025-06-03 07:06:51,930 | INFO     | exitcode: 0
[2025-06-03 09:07:11] 2025-06-03 07:06:51,930 | INFO     | exitmsg: OK
[2025-06-03 09:07:11] 2025-06-03 07:06:51,930 | INFO     | cpuconsumptiontime: 9399 s
[2025-06-03 09:07:11] 2025-06-03 07:06:51,930 | INFO     | nevents: 400
[2025-06-03 09:07:11] 2025-06-03 07:06:51,930 | INFO     | neventsw: 0
[2025-06-03 09:07:11] 2025-06-03 07:06:51,930 | INFO     | pid: 175680
[2025-06-03 09:07:11] 2025-06-03 07:06:51,930 | INFO     | pgrp: 175680
[2025-06-03 09:07:11] 2025-06-03 07:06:51,930 | INFO     | corecount: 4
[2025-06-03 09:07:11] 2025-06-03 07:06:51,930 | INFO     | event service: False
[2025-06-03 09:07:11] 2025-06-03 07:06:51,930 | INFO     | sizes: {0: 2404354, 1: 2405224, 6: 2405430, 11: 2405458, 2582: 2430493, 2583: 2439462, 2586: 2439646, 2592: 2439816}
[2025-06-03 09:07:11] 2025-06-03 07:06:51,930 | INFO     | --------------------------------------------------
[2025-06-03 09:07:11] 2025-06-03 07:06:51,930 | INFO     | 
[2025-06-03 09:07:11] 2025-06-03 07:06:51,930 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/1
[2025-06-03 09:07:11] 2025-06-03 07:06:51,951 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 09:07:11] 2025-06-03 07:06:51,951 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 09:07:11] 2025-06-03 07:06:51,951 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 09:07:11] 2025-06-03 07:06:51,951 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 09:07:11] 2025-06-03 07:06:51,952 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 09:07:11] 2025-06-03 07:06:51,952 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 09:07:11] 2025-06-03 07:06:51,952 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 09:07:11] 2025-06-03 07:06:51,952 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 09:07:11] 2025-06-03 07:06:51,952 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 09:07:11] 2025-06-03 07:06:51,952 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 09:07:11] 2025-06-03 07:06:51,952 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 09:07:11] 2025-06-03 07:06:51,952 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 09:07:11] 2025-06-03 07:06:51,952 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 09:07:11] 2025-06-03 07:06:51,952 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 09:07:11] 2025-06-03 07:06:51,952 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 09:07:11] 2025-06-03 07:06:51,952 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 09:07:11] 2025-06-03 07:06:51,952 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 09:07:11] 2025-06-03 07:06:51,952 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 09:07:11] 2025-06-03 07:06:51,952 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 09:07:11] 2025-06-03 07:06:51,952 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 09:07:11] 2025-06-03 07:06:51,952 | INFO     | job 6677419600 has completed (purged errors)
[2025-06-03 09:07:11] 2025-06-03 07:06:51,952 | INFO     | overall cleanup function is called
[2025-06-03 09:07:11] 2025-06-03 07:06:52,959 | INFO     | --- collectZombieJob: --- 10, [175680]
[2025-06-03 09:07:11] 2025-06-03 07:06:52,959 | INFO     | zombie collector waiting for pid 175680
[2025-06-03 09:07:11] 2025-06-03 07:06:52,959 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 09:07:11] 2025-06-03 07:06:52,959 | INFO     | collected zombie processes
[2025-06-03 09:07:11] 2025-06-03 07:06:52,959 | INFO     | will attempt to kill all subprocesses of pid=175680
[2025-06-03 09:07:11] 2025-06-03 07:06:53,069 | INFO     | process IDs to be killed: [175680] (in reverse order)
[2025-06-03 09:07:11] 2025-06-03 07:06:53,129 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 09:07:11] 2025-06-03 07:06:53,130 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 09:07:11] 2025-06-03 07:06:53,133 | INFO     | did not find any defunct processes belonging to 175680
[2025-06-03 09:07:11] 2025-06-03 07:06:53,135 | INFO     | did not find any defunct processes belonging to 175680
[2025-06-03 09:07:11] 2025-06-03 07:06:53,136 | INFO     | ready for new job
[2025-06-03 09:07:11] 2025-06-03 07:06:53,136 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 09:07:11] 2025-06-03 07:06:53,137 | INFO     | **************************************
[2025-06-03 09:07:11] 2025-06-03 07:06:53,137 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 09:07:11] 2025-06-03 07:06:53,137 | INFO     | **************************************
[2025-06-03 09:07:11] 2025-06-03 07:06:53,137 | INFO     | 
[2025-06-03 09:07:11] 2025-06-03 07:06:53,138 | INFO     | pilot is running in a VM
[2025-06-03 09:07:11] 2025-06-03 07:06:53,138 | INFO     | architecture information:
[2025-06-03 09:07:11] 2025-06-03 07:06:53,138 | INFO     | executing command: cat /etc/os-release
[2025-06-03 09:07:11] 2025-06-03 07:06:53,151 | INFO     | cat /etc/os-release:
[2025-06-03 09:07:11] NAME="CentOS Linux"
[2025-06-03 09:07:11] VERSION="7 (Core)"
[2025-06-03 09:07:11] ID="centos"
[2025-06-03 09:07:11] ID_LIKE="rhel fedora"
[2025-06-03 09:07:11] VERSION_ID="7"
[2025-06-03 09:07:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 09:07:11] ANSI_COLOR="0;31"
[2025-06-03 09:07:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 09:07:11] HOME_URL="https://www.centos.org/"
[2025-06-03 09:07:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 09:07:11] 
[2025-06-03 09:07:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 09:07:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 09:07:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 09:07:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 09:07:11] 
[2025-06-03 09:07:11] 2025-06-03 07:06:53,151 | INFO     | **************************************
[2025-06-03 09:07:11] 2025-06-03 07:06:53,655 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/1
[2025-06-03 09:07:11] 2025-06-03 07:06:53,669 | INFO     | sufficient remaining disk space (28096593920 B)
[2025-06-03 09:07:11] 2025-06-03 07:06:53,669 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 09:07:11] 2025-06-03 07:06:53,669 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 09:07:11] 2025-06-03 07:06:53,669 | INFO     | update_server=False
[2025-06-03 09:07:11] 2025-06-03 07:06:53,669 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 09:07:11] 2025-06-03 07:06:53,670 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 09:07:11] 2025-06-03 07:06:53,670 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 09:07:11] 2025-06-03 07:06:53,927 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 09:07:11] 2025-06-03 07:06:53,927 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 09:07:11] 2025-06-03 07:06:53,927 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 09:07:11] 2025-06-03 07:06:54,183 | INFO     | all data control threads have been joined
[2025-06-03 09:07:11] 2025-06-03 07:06:54,224 | INFO     | all job control threads have been joined
[2025-06-03 09:07:11] 2025-06-03 07:06:54,229 | INFO     | all payload control threads have been joined
[2025-06-03 09:07:11] 2025-06-03 07:06:54,273 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 09:07:11] 2025-06-03 07:06:54,273 | INFO     | aborting loop
[2025-06-03 09:07:11] 2025-06-03 07:06:54,675 | INFO     | [job] retrieve thread has finished
[2025-06-03 09:07:11] 2025-06-03 07:06:54,675 | INFO     | [job] queue monitor thread has finished
[2025-06-03 09:07:11] 2025-06-03 07:06:54,743 | INFO     | [data] copytool_in thread has finished
[2025-06-03 09:07:11] 2025-06-03 07:06:54,902 | INFO     | [payload] failed_post thread has finished
[2025-06-03 09:07:11] 2025-06-03 07:06:55,189 | INFO     | [data] control thread has finished
[2025-06-03 09:07:11] 2025-06-03 07:06:55,230 | INFO     | [job] control thread has finished
[2025-06-03 09:07:11] 2025-06-03 07:06:55,234 | INFO     | [job] validate thread has finished
[2025-06-03 09:07:11] 2025-06-03 07:06:55,234 | INFO     | [payload] control thread has finished
[2025-06-03 09:07:11] 2025-06-03 07:06:55,279 | INFO     | [job] job monitor thread has finished
[2025-06-03 09:07:11] 2025-06-03 07:06:55,285 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 09:07:11] 2025-06-03 07:06:55,375 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 09:07:11] 2025-06-03 07:06:55,428 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 09:07:11] 2025-06-03 07:06:55,676 | INFO     | [data] copytool_out thread has finished
[2025-06-03 09:07:11] 2025-06-03 07:06:56,119 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 09:07:11] 2025-06-03 07:06:56,255 | INFO     | [payload] validate_post thread has finished
[2025-06-03 09:07:11] 2025-06-03 07:07:00,126 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 09:07:11] 2025-06-03 07:07:03,873 | INFO     | job.realtimelogging is not enabled
[2025-06-03 09:07:11] 2025-06-03 07:07:04,879 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 09:07:11] 2025-06-03 07:07:06,173 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 125271380371264)>', '<ExcThread(monitor, started 125270287701760)>']
[2025-06-03 09:07:11] 2025-06-03 07:07:06,989 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 09:07:11] 2025-06-03 07:07:06,989 | INFO     | [monitor] control thread has ended
[2025-06-03 09:07:11] 2025-06-03 07:07:11,198 | INFO     | all workflow threads have been joined
[2025-06-03 09:07:11] 2025-06-03 07:07:11,198 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 09:07:11] 2025-06-03 07:07:11,199 | INFO     | traces error code: 0
[2025-06-03 09:07:11] 2025-06-03 07:07:11,199 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 09:07:11] 2025-06-03 07:07:11,264 [wrapper] ==== pilot stdout END ====
[2025-06-03 09:07:11] 2025-06-03 07:07:11,269 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 09:07:11] 2025-06-03 07:07:11,273 [wrapper] pilotpid: 168999
[2025-06-03 09:07:11] 2025-06-03 07:07:11,278 [wrapper] Pilot exit status: 0
[2025-06-03 09:07:11] 2025-06-03 07:07:11,297 [wrapper] pandaids: 6677419600
[2025-06-03 09:07:11] 2025-06-03 07:07:11,344 [wrapper] cleanup supervisor_pilot  206367 169000
[2025-06-03 09:07:11] 2025-06-03 07:07:11,348 [wrapper] Test setup, not cleaning
[2025-06-03 09:07:11] 2025-06-03 07:07:11,353 [wrapper] apfmon messages muted
[2025-06-03 09:07:11] 2025-06-03 07:07:11,357 [wrapper] ==== wrapper stdout END ====
[2025-06-03 09:07:11] 2025-06-03 07:07:11,361 [wrapper] ==== wrapper stderr END ====
[2025-06-03 09:07:11]  *** Error codes and diagnostics ***
[2025-06-03 09:07:11]     "exeErrorCode": 0,
[2025-06-03 09:07:11]     "exeErrorDiag": "",
[2025-06-03 09:07:11]     "pilotErrorCode": 0,
[2025-06-03 09:07:11]     "pilotErrorDiag": "",
[2025-06-03 09:07:11]  *** Listing of results directory ***
[2025-06-03 09:07:11] insgesamt 385540
[2025-06-03 09:07:11] -rw-r--r-- 1 yeti boinc    495897 Jun  3 01:21 pilot3.tar.gz
[2025-06-03 09:07:11] -rwx------ 1 yeti boinc     37140 Jun  3 01:29 runpilot2-wrapper.sh
[2025-06-03 09:07:11] -rw-r--r-- 1 yeti boinc      5111 Jun  3 01:29 queuedata.json
[2025-06-03 09:07:11] -rw-r--r-- 1 yeti boinc       100 Jun  3 08:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 09:07:11] -rwxr-xr-x 1 yeti boinc      7986 Jun  3 08:23 run_atlas
[2025-06-03 09:07:11] -rw-r--r-- 1 yeti boinc       105 Jun  3 08:23 job.xml
[2025-06-03 09:07:11] drwxrwx--x 2 yeti boinc      4096 Jun  3 08:23 shared
[2025-06-03 09:07:11] -rw-r--r-- 2 yeti boinc    508877 Jun  3 08:23 input.tar.gz
[2025-06-03 09:07:11] -rw-r--r-- 1 yeti boinc      6766 Jun  3 08:23 init_data.xml
[2025-06-03 09:07:11] -rw-r--r-- 2 yeti boinc 214317381 Jun  3 08:23 EVNT.45006593._000571.pool.root.1
[2025-06-03 09:07:11] -rw-r--r-- 2 yeti boinc     15093 Jun  3 08:23 start_atlas.sh
[2025-06-03 09:07:11] -rw-r--r-- 1 yeti boinc         0 Jun  3 08:23 boinc_lockfile
[2025-06-03 09:07:11] -rw-r--r-- 1 yeti boinc      2524 Jun  3 08:23 pandaJob.out
[2025-06-03 09:07:11] -rw------- 1 yeti boinc    988073 Jun  3 08:23 agis_schedconf.cvmfs.json
[2025-06-03 09:07:11] -rw------- 1 yeti boinc   1603667 Jun  3 08:23 agis_ddmendpoints.agis.ALL.json
[2025-06-03 09:07:11] drwx------ 4 yeti boinc      4096 Jun  3 08:23 pilot3
[2025-06-03 09:07:11] -rw-r--r-- 1 yeti boinc       528 Jun  3 09:06 boinc_task_state.xml
[2025-06-03 09:07:11] -rw------- 1 yeti boinc 175605885 Jun  3 09:06 HITS.45006595._014270.pool.root.1
[2025-06-03 09:07:11] -rw------- 1 yeti boinc      1020 Jun  3 09:06 memory_monitor_summary.json
[2025-06-03 09:07:11] -rw------- 1 yeti boinc    227197 Jun  3 09:06 log.45006595._014270.job.log.tgz.1
[2025-06-03 09:07:11] -rw------- 1 yeti boinc        95 Jun  3 09:06 pilot_heartbeat.json
[2025-06-03 09:07:11] -rw------- 1 yeti boinc      7648 Jun  3 09:06 heartbeat.json
[2025-06-03 09:07:11] -rw-r--r-- 1 yeti boinc      8192 Jun  3 09:07 boinc_mmap_file
[2025-06-03 09:07:11] -rw------- 1 yeti boinc      4501 Jun  3 09:07 pilotlog.txt
[2025-06-03 09:07:11] -rw-r--r-- 1 yeti boinc        26 Jun  3 09:07 wrapper_checkpoint.txt
[2025-06-03 09:07:11] -rw------- 1 yeti boinc    287733 Jun  3 09:07 log.45006595._014270.job.log.1
[2025-06-03 09:07:11] -rw------- 1 yeti boinc       357 Jun  3 09:07 output.list
[2025-06-03 09:07:11] -rw-r--r-- 1 yeti boinc       620 Jun  3 09:07 runtime_log
[2025-06-03 09:07:11] -rw------- 1 yeti boinc    532480 Jun  3 09:07 result.tar.gz
[2025-06-03 09:07:11] -rw-r--r-- 1 yeti boinc      8843 Jun  3 09:07 runtime_log.err
[2025-06-03 09:07:11] -rw------- 1 yeti boinc       639 Jun  3 09:07 Jx4NDmMmTg7n9Rq4apOajLDm4fhM0noT9bVof3QYDm0qWKDmZgjsDn.diag
[2025-06-03 09:07:11] -rw-r--r-- 1 yeti boinc     21181 Jun  3 09:07 stderr.txt
[2025-06-03 09:07:11] HITS file was successfully produced:
[2025-06-03 09:07:11] -rw------- 1 yeti boinc 175605885 Jun  3 09:06 shared/HITS.pool.root.1
[2025-06-03 09:07:11]  *** Contents of shared directory: ***
[2025-06-03 09:07:11] insgesamt 381832
[2025-06-03 09:07:11] -rw-r--r-- 2 yeti boinc    508877 Jun  3 08:23 input.tar.gz
[2025-06-03 09:07:11] -rw-r--r-- 2 yeti boinc 214317381 Jun  3 08:23 ATLAS.root_0
[2025-06-03 09:07:11] -rw-r--r-- 2 yeti boinc     15093 Jun  3 08:23 start_atlas.sh
[2025-06-03 09:07:11] -rw------- 1 yeti boinc 175605885 Jun  3 09:06 HITS.pool.root.1
[2025-06-03 09:07:11] -rw------- 1 yeti boinc    532480 Jun  3 09:07 result.tar.gz
09:07:13 (165256): run_atlas exited; CPU time 9460.588694
09:07:13 (165256): called boinc_finish(0)

</stderr_txt>
]]>

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