Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:53:46 (14136): wrapper (7.7.26015): starting
15:53:46 (14136): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 15:53:46] Arguments: --nthreads 8
[2025-06-03 15:53:46] Threads: 8
[2025-06-03 15:53:46] Checking for CVMFS
[2025-06-03 15:53:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 15:53:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 15:53:47] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 15:53:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 15:53:47] 2.11.2.0 16537 31853 89736 146743 3 155 22371964 25165824 3972 130560 0 15888521 99.786 18295735 2095 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 15:53:47] CVMFS is ok
[2025-06-03 15:53:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 15:53:47] Checking for apptainer binary...
[2025-06-03 15:53:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 15:53:47] Running /usr/bin/apptainer --version
[2025-06-03 15:53:47] apptainer version 1.3.2-1.el7
[2025-06-03 15:53:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 15:53:49] cg-vwn365.simple-grid.lan
[2025-06-03 15:53:49] apptainer works
[2025-06-03 15:53:49] Set ATHENA_PROC_NUMBER=8
[2025-06-03 15:53:49] Set ATHENA_CORE_NUMBER=8
[2025-06-03 15:53:49] Starting ATLAS job with PandaID=6677444408
[2025-06-03 15:53:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 23:04:33]  *** The last 200 lines of the pilot log: ***
[2025-06-03 23:04:33] 2025-06-03 17:35:20,613 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 23:04:33] 2025-06-03 17:35:23,130 | INFO     | monitor loop #927: job 0:6677444408 is in state 'finished'
[2025-06-03 23:04:33] 2025-06-03 17:35:23,131 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 23:04:33] 2025-06-03 17:35:25,635 | INFO     | monitor loop #928: job 0:6677444408 is in state 'finished'
[2025-06-03 23:04:33] 2025-06-03 17:35:25,635 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 23:04:33] 2025-06-03 17:35:27,042 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 23:04:33] 2025-06-03 17:35:27,043 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6677444408/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 23:04:33] 2025-06-03 17:35:27,044 | INFO     | extracted standard info from prmon json
[2025-06-03 23:04:33] 2025-06-03 17:35:27,044 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 23:04:33] 2025-06-03 17:35:27,044 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 23:04:33] 2025-06-03 17:35:27,044 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 23:04:33] 2025-06-03 17:35:27,044 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 23:04:33] 2025-06-03 17:35:27,049 | INFO     | fitting pss+swap vs Time
[2025-06-03 23:04:33] 2025-06-03 17:35:27,049 | INFO     | sum of square deviations: 3124858590.0
[2025-06-03 23:04:33] 2025-06-03 17:35:27,051 | INFO     | sum of deviations: -33035143438.500008
[2025-06-03 23:04:33] 2025-06-03 17:35:27,051 | INFO     | mean x: 1748965465.5
[2025-06-03 23:04:33] 2025-06-03 17:35:27,051 | INFO     | mean y: 2560855.8194444445
[2025-06-03 23:04:33] 2025-06-03 17:35:27,051 | INFO     | -- intersect: 18492141538.50097
[2025-06-03 23:04:33] 2025-06-03 17:35:27,051 | INFO     | intersect: 18492141538.50097
[2025-06-03 23:04:33] 2025-06-03 17:35:27,052 | INFO     | chi2: 2.1764238373815585
[2025-06-03 23:04:33] 2025-06-03 17:35:27,052 | INFO     | sum of square deviations: 2912836010.0
[2025-06-03 23:04:33] 2025-06-03 17:35:27,054 | INFO     | sum of deviations: -31144632749.999985
[2025-06-03 23:04:33] 2025-06-03 17:35:27,054 | INFO     | mean x: 1748965313.0
[2025-06-03 23:04:33] 2025-06-03 17:35:27,054 | INFO     | mean y: 2562216.8625592417
[2025-06-03 23:04:33] 2025-06-03 17:35:27,054 | INFO     | -- intersect: 18702853678.12947
[2025-06-03 23:04:33] 2025-06-03 17:35:27,054 | INFO     | intersect: 18702853678.12947
[2025-06-03 23:04:33] 2025-06-03 17:35:27,054 | INFO     | chi2: 2.175526038167128
[2025-06-03 23:04:33] 2025-06-03 17:35:27,055 | INFO     | current chi2=2.175526038167128 (change=0.04125112025562428 %)
[2025-06-03 23:04:33] 2025-06-03 17:35:27,055 | INFO     | right removable region: 210
[2025-06-03 23:04:33] 2025-06-03 17:35:27,055 | INFO     | sum of square deviations: 2912836010.0
[2025-06-03 23:04:33] 2025-06-03 17:35:27,056 | INFO     | sum of deviations: -75958522663.0
[2025-06-03 23:04:33] 2025-06-03 17:35:27,057 | INFO     | mean x: 1748965618.0
[2025-06-03 23:04:33] 2025-06-03 17:35:27,057 | INFO     | mean y: 2591496.009478673
[2025-06-03 23:04:33] 2025-06-03 17:35:27,057 | INFO     | -- intersect: 45610666950.85144
[2025-06-03 23:04:33] 2025-06-03 17:35:27,057 | INFO     | intersect: 45610666950.85144
[2025-06-03 23:04:33] 2025-06-03 17:35:27,057 | INFO     | chi2: 0.24532670314278035
[2025-06-03 23:04:33] 2025-06-03 17:35:27,057 | INFO     | current chi2=0.24532670314278035 (change=88.72799043416417 %)
[2025-06-03 23:04:33] 2025-06-03 17:35:27,058 | INFO     | sum of square deviations: 2710627567.5
[2025-06-03 23:04:33] 2025-06-03 17:35:27,059 | INFO     | sum of deviations: -77959804837.50002
[2025-06-03 23:04:33] 2025-06-03 17:35:27,059 | INFO     | mean x: 1748965770.5
[2025-06-03 23:04:33] 2025-06-03 17:35:27,059 | INFO     | mean y: 2592966.4417475727
[2025-06-03 23:04:33] 2025-06-03 17:35:27,060 | INFO     | -- intersect: 50304239629.54344
[2025-06-03 23:04:33] 2025-06-03 17:35:27,060 | INFO     | intersect: 50304239629.54344
[2025-06-03 23:04:33] 2025-06-03 17:35:27,066 | INFO     | chi2: 0.196316611660025
[2025-06-03 23:04:33] 2025-06-03 17:35:27,066 | INFO     | current chi2=0.196316611660025 (change=19.977479359118696 %)
[2025-06-03 23:04:33] 2025-06-03 17:35:27,067 | INFO     | left removable region: 20
[2025-06-03 23:04:33] 2025-06-03 17:35:27,067 | INFO     | sum of square deviations: 2126802667.5
[2025-06-03 23:04:33] 2025-06-03 17:35:27,068 | INFO     | sum of deviations: -66090885509.5
[2025-06-03 23:04:33] 2025-06-03 17:35:27,068 | INFO     | mean x: 1748965892.5
[2025-06-03 23:04:33] 2025-06-03 17:35:27,069 | INFO     | mean y: 2588332.1842105263
[2025-06-03 23:04:33] 2025-06-03 17:35:27,069 | INFO     | -- intersect: 54352108542.77892
[2025-06-03 23:04:33] 2025-06-03 17:35:27,069 | INFO     | intersect: 54352108542.77892
[2025-06-03 23:04:33] 2025-06-03 17:35:27,069 | INFO     | chi2: 0.1868997087624808
[2025-06-03 23:04:33] 2025-06-03 17:35:27,069 | INFO     | -- intersect: 54352108542.77892
[2025-06-03 23:04:33] 2025-06-03 17:35:27,069 | INFO     | current memory leak: -31.08 B/s (using 190 data points, chi2=0.19)
[2025-06-03 23:04:33] 2025-06-03 17:35:27,070 | INFO     | ..............................
[2025-06-03 23:04:33] 2025-06-03 17:35:27,070 | INFO     | . Timing measurements:
[2025-06-03 23:04:33] 2025-06-03 17:35:27,070 | INFO     | . get job = 0 s
[2025-06-03 23:04:33] 2025-06-03 17:35:27,070 | INFO     | . initial setup = 2 s
[2025-06-03 23:04:33] 2025-06-03 17:35:27,070 | INFO     | . payload setup = 13 s
[2025-06-03 23:04:33] 2025-06-03 17:35:27,070 | INFO     | . stage-in = 0 s
[2025-06-03 23:04:33] 2025-06-03 17:35:27,071 | INFO     | . payload execution = 13173 s
[2025-06-03 23:04:33] 2025-06-03 17:35:27,071 | INFO     | . stage-out = 2 s
[2025-06-03 23:04:33] 2025-06-03 17:35:27,071 | INFO     | . log creation = 0 s
[2025-06-03 23:04:33] 2025-06-03 17:35:27,071 | INFO     | ..............................
[2025-06-03 23:04:33] 2025-06-03 17:35:27,253 | INFO     | 
[2025-06-03 23:04:33] 2025-06-03 17:35:27,253 | INFO     | job summary report
[2025-06-03 23:04:33] 2025-06-03 17:35:27,254 | INFO     | --------------------------------------------------
[2025-06-03 23:04:33] 2025-06-03 17:35:27,254 | INFO     | PanDA job id: 6677444408
[2025-06-03 23:04:33] 2025-06-03 17:35:27,254 | INFO     | task id: 45006595
[2025-06-03 23:04:33] 2025-06-03 17:35:27,254 | INFO     | errors: (none)
[2025-06-03 23:04:33] 2025-06-03 17:35:27,254 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 23:04:33] 2025-06-03 17:35:27,254 | INFO     | pilot state: finished 
[2025-06-03 23:04:33] 2025-06-03 17:35:27,254 | INFO     | transexitcode: 0
[2025-06-03 23:04:33] 2025-06-03 17:35:27,254 | INFO     | exeerrorcode: 0
[2025-06-03 23:04:33] 2025-06-03 17:35:27,254 | INFO     | exeerrordiag: 
[2025-06-03 23:04:33] 2025-06-03 17:35:27,254 | INFO     | exitcode: 0
[2025-06-03 23:04:33] 2025-06-03 17:35:27,254 | INFO     | exitmsg: OK
[2025-06-03 23:04:33] 2025-06-03 17:35:27,254 | INFO     | cpuconsumptiontime: 49168 s
[2025-06-03 23:04:33] 2025-06-03 17:35:27,254 | INFO     | nevents: 400
[2025-06-03 23:04:33] 2025-06-03 17:35:27,255 | INFO     | neventsw: 0
[2025-06-03 23:04:33] 2025-06-03 17:35:27,255 | INFO     | pid: 26463
[2025-06-03 23:04:33] 2025-06-03 17:35:27,255 | INFO     | pgrp: 26463
[2025-06-03 23:04:33] 2025-06-03 17:35:27,255 | INFO     | corecount: 8
[2025-06-03 23:04:33] 2025-06-03 17:35:27,255 | INFO     | event service: False
[2025-06-03 23:04:33] 2025-06-03 17:35:27,255 | INFO     | sizes: {0: 2405012, 1: 2405211, 10: 2405417, 12: 2405445, 13191: 2434992, 13193: 2444119, 13255: 2444233}
[2025-06-03 23:04:33] 2025-06-03 17:35:27,255 | INFO     | --------------------------------------------------
[2025-06-03 23:04:33] 2025-06-03 17:35:27,255 | INFO     | 
[2025-06-03 23:04:33] 2025-06-03 17:35:27,255 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-06-03 23:04:33] 2025-06-03 17:35:27,601 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 23:04:33] 2025-06-03 17:35:27,602 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 23:04:33] 2025-06-03 17:35:27,602 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 23:04:33] 2025-06-03 17:35:27,602 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 23:04:33] 2025-06-03 17:35:27,602 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 23:04:33] 2025-06-03 17:35:27,602 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 23:04:33] 2025-06-03 17:35:27,602 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 23:04:33] 2025-06-03 17:35:27,602 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 23:04:33] 2025-06-03 17:35:27,602 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 23:04:33] 2025-06-03 17:35:27,602 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 23:04:33] 2025-06-03 17:35:27,603 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 23:04:33] 2025-06-03 17:35:27,603 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 23:04:33] 2025-06-03 17:35:27,603 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 23:04:33] 2025-06-03 17:35:27,603 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 23:04:33] 2025-06-03 17:35:27,603 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 23:04:33] 2025-06-03 17:35:27,603 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 23:04:33] 2025-06-03 17:35:27,603 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 23:04:33] 2025-06-03 17:35:27,603 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 23:04:33] 2025-06-03 17:35:27,603 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 23:04:33] 2025-06-03 17:35:27,603 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 23:04:33] 2025-06-03 17:35:27,604 | INFO     | job 6677444408 has completed (purged errors)
[2025-06-03 23:04:33] 2025-06-03 17:35:27,604 | INFO     | overall cleanup function is called
[2025-06-03 23:04:33] 2025-06-03 17:35:28,614 | INFO     | --- collectZombieJob: --- 10, [26463]
[2025-06-03 23:04:33] 2025-06-03 17:35:28,614 | INFO     | zombie collector waiting for pid 26463
[2025-06-03 23:04:33] 2025-06-03 17:35:28,615 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 23:04:33] 2025-06-03 17:35:28,615 | INFO     | collected zombie processes
[2025-06-03 23:04:33] 2025-06-03 17:35:28,615 | INFO     | will attempt to kill all subprocesses of pid=26463
[2025-06-03 23:04:33] 2025-06-03 17:35:28,740 | INFO     | process IDs to be killed: [26463] (in reverse order)
[2025-06-03 23:04:33] 2025-06-03 17:35:28,799 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 23:04:33] 2025-06-03 17:35:28,799 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 23:04:33] 2025-06-03 17:35:28,803 | INFO     | did not find any defunct processes belonging to 26463
[2025-06-03 23:04:33] 2025-06-03 17:35:28,806 | INFO     | did not find any defunct processes belonging to 26463
[2025-06-03 23:04:33] 2025-06-03 17:35:28,807 | INFO     | ready for new job
[2025-06-03 23:04:33] 2025-06-03 17:35:28,807 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 23:04:33] 2025-06-03 17:35:28,809 | INFO     | **************************************
[2025-06-03 23:04:33] 2025-06-03 17:35:28,809 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 23:04:33] 2025-06-03 17:35:28,809 | INFO     | **************************************
[2025-06-03 23:04:33] 2025-06-03 17:35:28,809 | INFO     | 
[2025-06-03 23:04:33] 2025-06-03 17:35:28,810 | INFO     | pilot is running in a VM
[2025-06-03 23:04:33] 2025-06-03 17:35:28,810 | INFO     | architecture information:
[2025-06-03 23:04:33] 2025-06-03 17:35:28,811 | INFO     | executing command: cat /etc/os-release
[2025-06-03 23:04:33] 2025-06-03 17:35:28,828 | INFO     | cat /etc/os-release:
[2025-06-03 23:04:33] NAME="CentOS Linux"
[2025-06-03 23:04:33] VERSION="7 (Core)"
[2025-06-03 23:04:33] ID="centos"
[2025-06-03 23:04:33] ID_LIKE="rhel fedora"
[2025-06-03 23:04:33] VERSION_ID="7"
[2025-06-03 23:04:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 23:04:33] ANSI_COLOR="0;31"
[2025-06-03 23:04:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 23:04:33] HOME_URL="https://www.centos.org/"
[2025-06-03 23:04:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 23:04:33] 
[2025-06-03 23:04:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 23:04:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 23:04:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 23:04:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 23:04:33] 
[2025-06-03 23:04:33] 2025-06-03 17:35:28,828 | INFO     | **************************************
[2025-06-03 23:04:33] 2025-06-03 17:35:29,331 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-06-03 23:04:33] 2025-06-03 17:35:29,454 | INFO     | sufficient remaining disk space (496911777792 B)
[2025-06-03 23:04:33] 2025-06-03 17:35:29,454 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 23:04:33] 2025-06-03 17:35:29,454 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 23:04:33] 2025-06-03 17:35:29,455 | INFO     | update_server=False
[2025-06-03 23:04:33] 2025-06-03 17:35:29,455 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 23:04:33] 2025-06-03 17:35:29,455 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 23:04:33] 2025-06-03 17:35:29,456 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 23:04:33] 2025-06-03 17:35:29,456 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 23:04:33] 2025-06-03 17:35:29,456 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 23:04:33] 2025-06-03 17:35:29,456 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 23:04:33] 2025-06-03 17:35:29,459 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:04:33] 2025-06-03 17:35:29,459 | INFO     | aborting loop
[2025-06-03 23:04:33] 2025-06-03 17:35:29,766 | INFO     | all payload control threads have been joined
[2025-06-03 23:04:33] 2025-06-03 17:35:30,166 | INFO     | all job control threads have been joined
[2025-06-03 23:04:33] 2025-06-03 17:35:30,243 | INFO     | all data control threads have been joined
[2025-06-03 23:04:33] 2025-06-03 17:35:30,261 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 23:04:33] 2025-06-03 17:35:30,460 | INFO     | [job] retrieve thread has finished
[2025-06-03 23:04:33] 2025-06-03 17:35:30,465 | INFO     | [job] job monitor thread has finished
[2025-06-03 23:04:33] 2025-06-03 17:35:30,772 | INFO     | [payload] control thread has finished
[2025-06-03 23:04:33] 2025-06-03 17:35:31,008 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 23:04:33] 2025-06-03 17:35:31,105 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 23:04:33] 2025-06-03 17:35:31,172 | INFO     | [job] control thread has finished
[2025-06-03 23:04:33] 2025-06-03 17:35:31,249 | INFO     | [data] control thread has finished
[2025-06-03 23:04:33] 2025-06-03 17:35:31,421 | INFO     | [payload] validate_post thread has finished
[2025-06-03 23:04:33] 2025-06-03 17:35:31,461 | INFO     | [data] copytool_out thread has finished
[2025-06-03 23:04:33] 2025-06-03 17:35:31,496 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 23:04:33] 2025-06-03 17:35:31,655 | INFO     | [data] copytool_in thread has finished
[2025-06-03 23:04:33] 2025-06-03 17:35:31,721 | INFO     | [payload] failed_post thread has finished
[2025-06-03 23:04:33] 2025-06-03 17:35:31,877 | INFO     | [job] validate thread has finished
[2025-06-03 23:04:33] 2025-06-03 17:35:32,262 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:04:33] 2025-06-03 17:35:33,268 | INFO     | [job] queue monitor thread has finished
[2025-06-03 23:04:33] 2025-06-03 17:35:34,269 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 23:04:33] 2025-06-03 17:35:39,887 | INFO     | job.realtimelogging is not enabled
[2025-06-03 23:04:33] 2025-06-03 17:35:40,893 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 23:04:33] 2025-06-03 17:35:41,325 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140382806841152)>', '<ExcThread(monitor, started 140382121740032)>']
[2025-06-03 23:04:33] 2025-06-03 17:35:41,527 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 23:04:33] 2025-06-03 17:35:41,528 | INFO     | [monitor] control thread has ended
[2025-06-03 23:04:33] 2025-06-03 17:35:46,351 | INFO     | all workflow threads have been joined
[2025-06-03 23:04:33] 2025-06-03 17:35:46,351 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 23:04:33] 2025-06-03 17:35:46,352 | INFO     | traces error code: 0
[2025-06-03 23:04:33] 2025-06-03 17:35:46,352 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 23:04:33] 2025-06-03 17:35:46,593 [wrapper] ==== pilot stdout END ====
[2025-06-03 23:04:33] 2025-06-03 17:35:46,656 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 23:04:33] 2025-06-03 17:35:46,686 [wrapper] pilotpid: 17900
[2025-06-03 23:04:33] 2025-06-03 17:35:46,803 [wrapper] Pilot exit status: 0
[2025-06-03 23:04:33] 2025-06-03 17:35:47,323 [wrapper] pandaids: 6677444408
[2025-06-03 23:04:33] 2025-06-03 17:35:48,155 [wrapper] cleanup supervisor_pilot 19149 17901
[2025-06-03 23:04:33] 2025-06-03 17:35:48,251 [wrapper] Test setup, not cleaning
[2025-06-03 23:04:33] 2025-06-03 17:35:48,320 [wrapper] apfmon messages muted
[2025-06-03 23:04:33] 2025-06-03 17:35:48,365 [wrapper] ==== wrapper stdout END ====
[2025-06-03 23:04:33] 2025-06-03 17:35:48,407 [wrapper] ==== wrapper stderr END ====
[2025-06-03 23:04:33]  *** Error codes and diagnostics ***
[2025-06-03 23:04:33]     "exeErrorCode": 0,
[2025-06-03 23:04:33]     "exeErrorDiag": "",
[2025-06-03 23:04:33]     "pilotErrorCode": 0,
[2025-06-03 23:04:33]     "pilotErrorDiag": "",
[2025-06-03 23:04:33]  *** Listing of results directory ***
[2025-06-03 23:04:33] total 389016
[2025-06-03 23:04:33] -rw-r--r--. 1 boinc boinc    495897 Jun  3 04:22 pilot3.tar.gz
[2025-06-03 23:04:33] -rw-r--r--. 1 boinc boinc      5111 Jun  3 04:39 queuedata.json
[2025-06-03 23:04:33] -rwx------. 1 boinc boinc     37140 Jun  3 04:41 runpilot2-wrapper.sh
[2025-06-03 23:04:33] -rw-r--r--. 1 boinc boinc       100 Jun  3 15:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 23:04:33] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 15:53 run_atlas
[2025-06-03 23:04:33] -rw-r--r--. 1 boinc boinc       105 Jun  3 15:53 job.xml
[2025-06-03 23:04:33] -rw-r--r--. 2 boinc boinc 213993041 Jun  3 15:53 EVNT.45006593._000705.pool.root.1
[2025-06-03 23:04:33] -rw-r--r--. 1 boinc boinc      6392 Jun  3 15:53 init_data.xml
[2025-06-03 23:04:33] -rw-r--r--. 2 boinc boinc     15093 Jun  3 15:53 start_atlas.sh
[2025-06-03 23:04:33] drwxrwx--x. 2 boinc boinc        68 Jun  3 15:53 shared
[2025-06-03 23:04:33] -rw-r--r--. 2 boinc boinc    508876 Jun  3 15:53 input.tar.gz
[2025-06-03 23:04:33] -rw-r--r--. 1 boinc boinc         0 Jun  3 15:53 boinc_lockfile
[2025-06-03 23:04:33] -rw-r--r--. 1 boinc boinc      2524 Jun  3 15:53 pandaJob.out
[2025-06-03 23:04:33] -rw-------. 1 boinc boinc    982724 Jun  3 15:54 agis_schedconf.cvmfs.json
[2025-06-03 23:04:33] drwx------. 4 boinc boinc      4096 Jun  3 15:54 pilot3
[2025-06-03 23:04:33] -rw-------. 1 boinc boinc 177444180 Jun  3 19:33 HITS.45006595._017624.pool.root.1
[2025-06-03 23:04:33] -rw-r--r--. 1 boinc boinc       531 Jun  3 19:33 boinc_task_state.xml
[2025-06-03 23:04:33] -rw-------. 1 boinc boinc      1018 Jun  3 19:34 memory_monitor_summary.json
[2025-06-03 23:04:33] -rw-------. 1 boinc boinc   1603667 Jun  3 19:34 agis_ddmendpoints.agis.ALL.json
[2025-06-03 23:04:33] -rw-------. 1 boinc boinc    390829 Jun  3 19:34 log.45006595._017624.job.log.tgz.1
[2025-06-03 23:04:33] -rw-------. 1 boinc boinc        95 Jun  3 19:35 pilot_heartbeat.json
[2025-06-03 23:04:33] -rw-------. 1 boinc boinc      7694 Jun  3 19:35 heartbeat.json
[2025-06-03 23:04:33] -rw-------. 1 boinc boinc      4612 Jun  3 19:35 pilotlog.txt
[2025-06-03 23:04:33] -rw-------. 1 boinc boinc   1156696 Jun  3 19:35 log.45006595._017624.job.log.1
[2025-06-03 23:04:33] -rw-------. 1 boinc boinc       357 Jun  3 19:35 output.list
[2025-06-03 23:04:33] -rw-r--r--. 1 boinc boinc       620 Jun  3 19:35 runtime_log
[2025-06-03 23:04:33] -rw-------. 1 boinc boinc   1566720 Jun  3 19:35 result.tar.gz
[2025-06-03 23:04:33] -rw-------. 1 boinc boinc       656 Jun  3 19:35 Ud2LDmclWg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfdhKDmKbeSMo.diag
[2025-06-03 23:04:33] -rw-r--r--. 1 boinc boinc      8673 Jun  3 19:35 runtime_log.err
[2025-06-03 23:04:33] -rw-r--r--. 1 boinc boinc      8192 Jun  3 23:04 boinc_mmap_file
[2025-06-03 23:04:33] -rw-r--r--. 1 boinc boinc        28 Jun  3 23:04 wrapper_checkpoint.txt
[2025-06-03 23:04:33] -rw-r--r--. 1 boinc boinc     20716 Jun  3 23:04 stderr.txt
[2025-06-03 23:04:33] HITS file was successfully produced:
[2025-06-03 23:04:33] -rw-------. 1 boinc boinc 177444180 Jun  3 19:33 shared/HITS.pool.root.1
[2025-06-03 23:04:33]  *** Contents of shared directory: ***
[2025-06-03 23:04:33] total 384316
[2025-06-03 23:04:33] -rw-r--r--. 2 boinc boinc 213993041 Jun  3 15:53 ATLAS.root_0
[2025-06-03 23:04:33] -rw-r--r--. 2 boinc boinc     15093 Jun  3 15:53 start_atlas.sh
[2025-06-03 23:04:33] -rw-r--r--. 2 boinc boinc    508876 Jun  3 15:53 input.tar.gz
[2025-06-03 23:04:33] -rw-------. 1 boinc boinc 177444180 Jun  3 19:33 HITS.pool.root.1
[2025-06-03 23:04:33] -rw-------. 1 boinc boinc   1566720 Jun  3 19:35 result.tar.gz
23:04:35 (14136): run_atlas exited; CPU time 49332.993334
23:04:35 (14136): called boinc_finish(0)

</stderr_txt>
]]>

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