Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
11:41:05 (236983): wrapper (7.7.26015): starting
11:41:05 (236983): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 11:41:05] Arguments: --nthreads 8
[2025-06-03 11:41:05] Threads: 8
[2025-06-03 11:41:05] Checking for CVMFS
[2025-06-03 11:41:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 11:41:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 11:41:05] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 11:41:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 11:41:05] 2.12.7.0 20002 777 54852 146741 3 56 3220070 4096001 0 130560 0 595342 99.989 228731 8792 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-03 11:41:05] CVMFS is ok
[2025-06-03 11:41:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 11:41:05] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-03 11:41:05] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-03 11:41:05] Further information can be found at the LHC@home message board.
[2025-06-03 11:41:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 11:41:05] Checking for apptainer binary...
[2025-06-03 11:41:05] apptainer is not installed, using version from CVMFS
[2025-06-03 11:41:05] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 11:41:06] vm-zhiwei-ec8ce3
[2025-06-03 11:41:06] apptainer works
[2025-06-03 11:41:06] Set ATHENA_PROC_NUMBER=8
[2025-06-03 11:41:06] Set ATHENA_CORE_NUMBER=8
[2025-06-03 11:41:06] Starting ATLAS job with PandaID=6677454664
[2025-06-03 11:41:06] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 13:20:22]  *** The last 200 lines of the pilot log: ***
[2025-06-03 13:20:22]  protocol_id=None
[2025-06-03 13:20:22]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 13:20:22]  replicas=None
[2025-06-03 13:20:22]  scope=mc23_13p6TeV
[2025-06-03 13:20:22]  status=None
[2025-06-03 13:20:22]  status_code=0
[2025-06-03 13:20:22]  storage_token=
[2025-06-03 13:20:22]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6677454664/log.45006595._018119.job.log.tgz.1
[2025-06-03 13:20:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d2/78/log.45006595._018119.job.log.tgz.1
[2025-06-03 13:20:22]  workdir=None
[2025-06-03 13:20:22] ]
[2025-06-03 13:20:22] 2025-06-03 13:19:51,822 | INFO     | transferring file log.45006595._018119.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6677454664/log.45006595._018119.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-06-03 13:20:22] 2025-06-03 13:19:51,822 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6677454664/log.45006595._018119.job.log.tgz.1 /var/lib/boinc/slots/0/log.45006595._018119.job
[2025-06-03 13:20:22] 2025-06-03 13:19:51,841 | INFO     | adding to output.list: log.45006595._018119.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d2/78/log.45006595._018119.job.log.tg
[2025-06-03 13:20:22] 2025-06-03 13:19:51,841 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 13:20:22] 2025-06-03 13:19:51,842 | INFO     | summary of transferred files:
[2025-06-03 13:20:22] 2025-06-03 13:19:51,842 | INFO     |  -- lfn=log.45006595._018119.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 13:20:22] 2025-06-03 13:19:51,842 | INFO     | stage-out finished correctly
[2025-06-03 13:20:22] 2025-06-03 13:19:51,906 | INFO     | monitor loop #433: job 0:6677454664 is in state 'finished'
[2025-06-03 13:20:22] 2025-06-03 13:19:51,907 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 13:20:22] 2025-06-03 13:19:53,698 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 13:20:22] 2025-06-03 13:19:54,410 | INFO     | monitor loop #434: job 0:6677454664 is in state 'finished'
[2025-06-03 13:20:22] 2025-06-03 13:19:54,411 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 13:20:22] 2025-06-03 13:19:55,965 | INFO     | job 6677454664 has state=finished
[2025-06-03 13:20:22] 2025-06-03 13:19:55,965 | INFO     | preparing for final server update for job 6677454664 in state='finished'
[2025-06-03 13:20:22] 2025-06-03 13:19:55,967 | INFO     | this job has now completed (state=finished)
[2025-06-03 13:20:22] 2025-06-03 13:19:55,967 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 13:20:22] 2025-06-03 13:19:55,967 | INFO     | log transfer has been attempted: DONE
[2025-06-03 13:20:22] 2025-06-03 13:19:55,968 | INFO     | job 6677454664 has finished - writing final server update
[2025-06-03 13:20:22] 2025-06-03 13:19:55,968 | INFO     | total number of processed events: 400 (read)
[2025-06-03 13:20:22] 2025-06-03 13:19:55,975 | INFO     | executing command: lscpu
[2025-06-03 13:20:22] 2025-06-03 13:19:56,017 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 13:20:22] 2025-06-03 13:19:56,914 | INFO     | monitor loop #435: job 0:6677454664 is in state 'finished'
[2025-06-03 13:20:22] 2025-06-03 13:19:56,915 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 13:20:22] 2025-06-03 13:19:59,419 | INFO     | monitor loop #436: job 0:6677454664 is in state 'finished'
[2025-06-03 13:20:22] 2025-06-03 13:19:59,420 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 13:20:22] 2025-06-03 13:20:01,923 | INFO     | monitor loop #437: job 0:6677454664 is in state 'finished'
[2025-06-03 13:20:22] 2025-06-03 13:20:01,923 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 13:20:22] 2025-06-03 13:20:02,897 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-03 13:20:22] 2025-06-03 13:20:02,898 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6677454664/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 13:20:22] 2025-06-03 13:20:02,901 | INFO     | extracted standard info from prmon json
[2025-06-03 13:20:22] 2025-06-03 13:20:02,901 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 13:20:22] 2025-06-03 13:20:02,902 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 13:20:22] 2025-06-03 13:20:02,903 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 13:20:22] 2025-06-03 13:20:02,903 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 13:20:22] 2025-06-03 13:20:02,908 | INFO     | fitting pss+swap vs Time
[2025-06-03 13:20:22] 2025-06-03 13:20:02,909 | INFO     | sum of square deviations: 226022842.5
[2025-06-03 13:20:22] 2025-06-03 13:20:02,910 | INFO     | sum of deviations: -17713535843.5
[2025-06-03 13:20:22] 2025-06-03 13:20:02,910 | INFO     | mean x: 1748953936.5
[2025-06-03 13:20:22] 2025-06-03 13:20:02,910 | INFO     | mean y: 2668667.8777777776
[2025-06-03 13:20:22] 2025-06-03 13:20:02,911 | INFO     | -- intersect: 137069161152.2521
[2025-06-03 13:20:22] 2025-06-03 13:20:02,911 | INFO     | intersect: 137069161152.2521
[2025-06-03 13:20:22] 2025-06-03 13:20:02,911 | INFO     | chi2: 0.16485640540503224
[2025-06-03 13:20:22] 2025-06-03 13:20:02,911 | INFO     | -- intersect: 137069161152.2521
[2025-06-03 13:20:22] 2025-06-03 13:20:02,911 | INFO     | current memory leak: -78.37 B/s (using 90 data points, chi2=0.16)
[2025-06-03 13:20:22] 2025-06-03 13:20:02,912 | INFO     | ..............................
[2025-06-03 13:20:22] 2025-06-03 13:20:02,912 | INFO     | . Timing measurements:
[2025-06-03 13:20:22] 2025-06-03 13:20:02,912 | INFO     | . get job = 0 s
[2025-06-03 13:20:22] 2025-06-03 13:20:02,912 | INFO     | . initial setup = 3 s
[2025-06-03 13:20:22] 2025-06-03 13:20:02,912 | INFO     | . payload setup = 12 s
[2025-06-03 13:20:22] 2025-06-03 13:20:02,912 | INFO     | . stage-in = 0 s
[2025-06-03 13:20:22] 2025-06-03 13:20:02,912 | INFO     | . payload execution = 5872 s
[2025-06-03 13:20:22] 2025-06-03 13:20:02,912 | INFO     | . stage-out = 0 s
[2025-06-03 13:20:22] 2025-06-03 13:20:02,912 | INFO     | . log creation = 0 s
[2025-06-03 13:20:22] 2025-06-03 13:20:02,913 | INFO     | ..............................
[2025-06-03 13:20:22] 2025-06-03 13:20:02,978 | INFO     | 
[2025-06-03 13:20:22] 2025-06-03 13:20:02,979 | INFO     | job summary report
[2025-06-03 13:20:22] 2025-06-03 13:20:02,979 | INFO     | --------------------------------------------------
[2025-06-03 13:20:22] 2025-06-03 13:20:02,980 | INFO     | PanDA job id: 6677454664
[2025-06-03 13:20:22] 2025-06-03 13:20:02,980 | INFO     | task id: 45006595
[2025-06-03 13:20:22] 2025-06-03 13:20:02,981 | INFO     | errors: (none)
[2025-06-03 13:20:22] 2025-06-03 13:20:02,981 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 13:20:22] 2025-06-03 13:20:02,981 | INFO     | pilot state: finished 
[2025-06-03 13:20:22] 2025-06-03 13:20:02,982 | INFO     | transexitcode: 0
[2025-06-03 13:20:22] 2025-06-03 13:20:02,982 | INFO     | exeerrorcode: 0
[2025-06-03 13:20:22] 2025-06-03 13:20:02,982 | INFO     | exeerrordiag: 
[2025-06-03 13:20:22] 2025-06-03 13:20:02,983 | INFO     | exitcode: 0
[2025-06-03 13:20:22] 2025-06-03 13:20:02,983 | INFO     | exitmsg: OK
[2025-06-03 13:20:22] 2025-06-03 13:20:02,983 | INFO     | cpuconsumptiontime: 44456 s
[2025-06-03 13:20:22] 2025-06-03 13:20:02,983 | INFO     | nevents: 400
[2025-06-03 13:20:22] 2025-06-03 13:20:02,984 | INFO     | neventsw: 0
[2025-06-03 13:20:22] 2025-06-03 13:20:02,984 | INFO     | pid: 247219
[2025-06-03 13:20:22] 2025-06-03 13:20:02,984 | INFO     | pgrp: 247219
[2025-06-03 13:20:22] 2025-06-03 13:20:02,985 | INFO     | corecount: 8
[2025-06-03 13:20:22] 2025-06-03 13:20:02,985 | INFO     | event service: False
[2025-06-03 13:20:22] 2025-06-03 13:20:02,985 | INFO     | sizes: {0: 2405011, 1: 2405210, 7: 2405416, 11: 2405444, 5888: 2431909, 5890: 2440850, 5892: 2441034, 5901: 2441204}
[2025-06-03 13:20:22] 2025-06-03 13:20:02,985 | INFO     | --------------------------------------------------
[2025-06-03 13:20:22] 2025-06-03 13:20:02,986 | INFO     | 
[2025-06-03 13:20:22] 2025-06-03 13:20:02,986 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-06-03 13:20:22] 2025-06-03 13:20:03,024 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 13:20:22] 2025-06-03 13:20:03,025 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 13:20:22] 2025-06-03 13:20:03,025 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 13:20:22] 2025-06-03 13:20:03,025 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 13:20:22] 2025-06-03 13:20:03,026 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 13:20:22] 2025-06-03 13:20:03,026 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 13:20:22] 2025-06-03 13:20:03,026 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 13:20:22] 2025-06-03 13:20:03,027 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 13:20:22] 2025-06-03 13:20:03,027 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 13:20:22] 2025-06-03 13:20:03,027 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 13:20:22] 2025-06-03 13:20:03,028 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 13:20:22] 2025-06-03 13:20:03,028 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 13:20:22] 2025-06-03 13:20:03,028 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 13:20:22] 2025-06-03 13:20:03,029 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 13:20:22] 2025-06-03 13:20:03,029 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 13:20:22] 2025-06-03 13:20:03,029 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 13:20:22] 2025-06-03 13:20:03,030 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 13:20:22] 2025-06-03 13:20:03,030 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 13:20:22] 2025-06-03 13:20:03,030 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 13:20:22] 2025-06-03 13:20:03,031 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 13:20:22] 2025-06-03 13:20:03,031 | INFO     | job 6677454664 has completed (purged errors)
[2025-06-03 13:20:22] 2025-06-03 13:20:03,032 | INFO     | overall cleanup function is called
[2025-06-03 13:20:22] 2025-06-03 13:20:04,045 | INFO     | --- collectZombieJob: --- 10, [247219]
[2025-06-03 13:20:22] 2025-06-03 13:20:04,045 | INFO     | zombie collector waiting for pid 247219
[2025-06-03 13:20:22] 2025-06-03 13:20:04,046 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 13:20:22] 2025-06-03 13:20:04,046 | INFO     | collected zombie processes
[2025-06-03 13:20:22] 2025-06-03 13:20:04,047 | INFO     | will attempt to kill all subprocesses of pid=247219
[2025-06-03 13:20:22] 2025-06-03 13:20:04,174 | INFO     | process IDs to be killed: [247219] (in reverse order)
[2025-06-03 13:20:22] 2025-06-03 13:20:04,227 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 13:20:22] 2025-06-03 13:20:04,228 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 13:20:22] 2025-06-03 13:20:04,233 | INFO     | did not find any defunct processes belonging to 247219
[2025-06-03 13:20:22] 2025-06-03 13:20:04,237 | INFO     | did not find any defunct processes belonging to 247219
[2025-06-03 13:20:22] 2025-06-03 13:20:04,237 | INFO     | ready for new job
[2025-06-03 13:20:22] 2025-06-03 13:20:04,238 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 13:20:22] 2025-06-03 13:20:04,242 | INFO     | **************************************
[2025-06-03 13:20:22] 2025-06-03 13:20:04,242 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 13:20:22] 2025-06-03 13:20:04,242 | INFO     | **************************************
[2025-06-03 13:20:22] 2025-06-03 13:20:04,243 | INFO     | 
[2025-06-03 13:20:22] 2025-06-03 13:20:04,244 | INFO     | pilot is running in a VM
[2025-06-03 13:20:22] 2025-06-03 13:20:04,244 | INFO     | architecture information:
[2025-06-03 13:20:22] 2025-06-03 13:20:04,245 | INFO     | executing command: cat /etc/os-release
[2025-06-03 13:20:22] 2025-06-03 13:20:04,267 | INFO     | cat /etc/os-release:
[2025-06-03 13:20:22] NAME="CentOS Linux"
[2025-06-03 13:20:22] VERSION="7 (Core)"
[2025-06-03 13:20:22] ID="centos"
[2025-06-03 13:20:22] ID_LIKE="rhel fedora"
[2025-06-03 13:20:22] VERSION_ID="7"
[2025-06-03 13:20:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 13:20:22] ANSI_COLOR="0;31"
[2025-06-03 13:20:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 13:20:22] HOME_URL="https://www.centos.org/"
[2025-06-03 13:20:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 13:20:22] 
[2025-06-03 13:20:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 13:20:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 13:20:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 13:20:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 13:20:22] 
[2025-06-03 13:20:22] 2025-06-03 13:20:04,268 | INFO     | **************************************
[2025-06-03 13:20:22] 2025-06-03 13:20:04,771 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-06-03 13:20:22] 2025-06-03 13:20:04,801 | INFO     | sufficient remaining disk space (31085035520 B)
[2025-06-03 13:20:22] 2025-06-03 13:20:04,802 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 13:20:22] 2025-06-03 13:20:04,802 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 13:20:22] 2025-06-03 13:20:04,803 | INFO     | update_server=False
[2025-06-03 13:20:22] 2025-06-03 13:20:04,803 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 13:20:22] 2025-06-03 13:20:04,804 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:20:22] 2025-06-03 13:20:04,804 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 13:20:22] 2025-06-03 13:20:04,805 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 13:20:22] 2025-06-03 13:20:04,806 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 13:20:22] 2025-06-03 13:20:04,807 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 13:20:22] 2025-06-03 13:20:04,807 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 13:20:22] 2025-06-03 13:20:04,914 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 13:20:22] 2025-06-03 13:20:05,393 | INFO     | all payload control threads have been joined
[2025-06-03 13:20:22] 2025-06-03 13:20:05,437 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:20:22] 2025-06-03 13:20:05,437 | INFO     | aborting loop
[2025-06-03 13:20:22] 2025-06-03 13:20:05,615 | INFO     | all data control threads have been joined
[2025-06-03 13:20:22] 2025-06-03 13:20:05,696 | INFO     | all job control threads have been joined
[2025-06-03 13:20:22] 2025-06-03 13:20:05,809 | INFO     | [job] retrieve thread has finished
[2025-06-03 13:20:22] 2025-06-03 13:20:05,810 | INFO     | [job] queue monitor thread has finished
[2025-06-03 13:20:22] 2025-06-03 13:20:05,913 | INFO     | [payload] failed_post thread has finished
[2025-06-03 13:20:22] 2025-06-03 13:20:06,043 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 13:20:22] 2025-06-03 13:20:06,350 | INFO     | [data] copytool_in thread has finished
[2025-06-03 13:20:22] 2025-06-03 13:20:06,385 | INFO     | [job] validate thread has finished
[2025-06-03 13:20:22] 2025-06-03 13:20:06,395 | INFO     | [payload] control thread has finished
[2025-06-03 13:20:22] 2025-06-03 13:20:06,443 | INFO     | [job] job monitor thread has finished
[2025-06-03 13:20:22] 2025-06-03 13:20:06,621 | INFO     | [data] control thread has finished
[2025-06-03 13:20:22] 2025-06-03 13:20:06,702 | INFO     | [job] control thread has finished
[2025-06-03 13:20:22] 2025-06-03 13:20:06,869 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 13:20:22] 2025-06-03 13:20:06,886 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 13:20:22] 2025-06-03 13:20:06,920 | INFO     | [data] copytool_out thread has finished
[2025-06-03 13:20:22] 2025-06-03 13:20:07,185 | INFO     | [payload] validate_post thread has finished
[2025-06-03 13:20:22] 2025-06-03 13:20:08,806 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 13:20:22] 2025-06-03 13:20:15,808 | INFO     | job.realtimelogging is not enabled
[2025-06-03 13:20:22] 2025-06-03 13:20:16,815 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 13:20:22] 2025-06-03 13:20:16,845 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140279745197888)>', '<ExcThread(monitor, started 140278765696768)>']
[2025-06-03 13:20:22] 2025-06-03 13:20:16,869 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 13:20:22] 2025-06-03 13:20:16,870 | INFO     | [monitor] control thread has ended
[2025-06-03 13:20:22] 2025-06-03 13:20:21,871 | INFO     | all workflow threads have been joined
[2025-06-03 13:20:22] 2025-06-03 13:20:21,872 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 13:20:22] 2025-06-03 13:20:21,873 | INFO     | traces error code: 0
[2025-06-03 13:20:22] 2025-06-03 13:20:21,873 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 13:20:22] 2025-06-03 13:20:22,011 [wrapper] ==== pilot stdout END ====
[2025-06-03 13:20:22] 2025-06-03 13:20:22,015 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 13:20:22] 2025-06-03 13:20:22,021 [wrapper] pilotpid: 240660
[2025-06-03 13:20:22] 2025-06-03 13:20:22,028 [wrapper] Pilot exit status: 0
[2025-06-03 13:20:22] 2025-06-03 13:20:22,052 [wrapper] pandaids: 6677454664
[2025-06-03 13:20:22] 2025-06-03 13:20:22,105 [wrapper] cleanup supervisor_pilot  258789 240661
[2025-06-03 13:20:22] 2025-06-03 13:20:22,111 [wrapper] Test setup, not cleaning
[2025-06-03 13:20:22] 2025-06-03 13:20:22,117 [wrapper] apfmon messages muted
[2025-06-03 13:20:22] 2025-06-03 13:20:22,123 [wrapper] ==== wrapper stdout END ====
[2025-06-03 13:20:22] 2025-06-03 13:20:22,129 [wrapper] ==== wrapper stderr END ====
[2025-06-03 13:20:22]  *** Error codes and diagnostics ***
[2025-06-03 13:20:22]     "exeErrorCode": 0,
[2025-06-03 13:20:22]     "exeErrorDiag": "",
[2025-06-03 13:20:22]     "pilotErrorCode": 0,
[2025-06-03 13:20:22]     "pilotErrorDiag": "",
[2025-06-03 13:20:22]  *** Listing of results directory ***
[2025-06-03 13:20:22] total 391512
[2025-06-03 13:20:22] -rw-r--r-- 1 boinc boinc    495897 Jun  3 02:50 pilot3.tar.gz
[2025-06-03 13:20:22] -rw-r--r-- 1 boinc boinc      5111 Jun  3 03:08 queuedata.json
[2025-06-03 13:20:22] -rwx------ 1 boinc boinc     37140 Jun  3 03:09 runpilot2-wrapper.sh
[2025-06-03 13:20:22] -rw-r--r-- 1 boinc boinc       100 Jun  3 11:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 13:20:22] -rwxr-xr-x 1 boinc boinc      7986 Jun  3 11:41 run_atlas
[2025-06-03 13:20:22] -rw-r--r-- 1 boinc boinc       105 Jun  3 11:41 job.xml
[2025-06-03 13:20:22] -rw-r--r-- 1 boinc boinc      6318 Jun  3 11:41 init_data.xml
[2025-06-03 13:20:22] -rw-r--r-- 2 boinc boinc 216516440 Jun  3 11:41 EVNT.45006593._000725.pool.root.1
[2025-06-03 13:20:22] -rw-r--r-- 2 boinc boinc     15093 Jun  3 11:41 start_atlas.sh
[2025-06-03 13:20:22] drwxrwx--x 2 boinc boinc      4096 Jun  3 11:41 shared
[2025-06-03 13:20:22] -rw-r--r-- 2 boinc boinc    508884 Jun  3 11:41 input.tar.gz
[2025-06-03 13:20:22] -rw-r--r-- 1 boinc boinc         0 Jun  3 11:41 boinc_lockfile
[2025-06-03 13:20:22] -rw-r--r-- 1 boinc boinc      2524 Jun  3 11:41 pandaJob.out
[2025-06-03 13:20:22] -rw------- 1 boinc boinc    982666 Jun  3 11:41 agis_schedconf.cvmfs.json
[2025-06-03 13:20:22] -rw------- 1 boinc boinc   1603667 Jun  3 11:41 agis_ddmendpoints.agis.ALL.json
[2025-06-03 13:20:22] drwx------ 4 boinc boinc      4096 Jun  3 11:41 pilot3
[2025-06-03 13:20:22] -rw------- 1 boinc boinc 178797096 Jun  3 13:19 HITS.45006595._018119.pool.root.1
[2025-06-03 13:20:22] -rw------- 1 boinc boinc        95 Jun  3 13:19 pilot_heartbeat.json
[2025-06-03 13:20:22] -rw-r--r-- 1 boinc boinc       529 Jun  3 13:19 boinc_task_state.xml
[2025-06-03 13:20:22] -rw------- 1 boinc boinc      1018 Jun  3 13:19 memory_monitor_summary.json
[2025-06-03 13:20:22] -rw------- 1 boinc boinc    332873 Jun  3 13:19 log.45006595._018119.job.log.tgz.1
[2025-06-03 13:20:22] -rw------- 1 boinc boinc      7682 Jun  3 13:20 heartbeat.json
[2025-06-03 13:20:22] -rw-r--r-- 1 boinc boinc      8192 Jun  3 13:20 boinc_mmap_file
[2025-06-03 13:20:22] -rw-r--r-- 1 boinc boinc        27 Jun  3 13:20 wrapper_checkpoint.txt
[2025-06-03 13:20:22] -rw------- 1 boinc boinc      4610 Jun  3 13:20 pilotlog.txt
[2025-06-03 13:20:22] -rw------- 1 boinc boinc    545726 Jun  3 13:20 log.45006595._018119.job.log.1
[2025-06-03 13:20:22] -rw------- 1 boinc boinc       357 Jun  3 13:20 output.list
[2025-06-03 13:20:22] -rw-r--r-- 1 boinc boinc       620 Jun  3 13:20 runtime_log
[2025-06-03 13:20:22] -rw------- 1 boinc boinc    901120 Jun  3 13:20 result.tar.gz
[2025-06-03 13:20:22] -rw-r--r-- 1 boinc boinc      8695 Jun  3 13:20 runtime_log.err
[2025-06-03 13:20:22] -rw------- 1 boinc boinc       651 Jun  3 13:20 6c6MDm6CXg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOjhKDmjY2FSm.diag
[2025-06-03 13:20:22] -rw-r--r-- 1 boinc boinc     21786 Jun  3 13:20 stderr.txt
[2025-06-03 13:20:22] HITS file was successfully produced:
[2025-06-03 13:20:22] -rw------- 1 boinc boinc 178797096 Jun  3 13:19 shared/HITS.pool.root.1
[2025-06-03 13:20:22]  *** Contents of shared directory: ***
[2025-06-03 13:20:22] total 387456
[2025-06-03 13:20:22] -rw-r--r-- 2 boinc boinc 216516440 Jun  3 11:41 ATLAS.root_0
[2025-06-03 13:20:22] -rw-r--r-- 2 boinc boinc     15093 Jun  3 11:41 start_atlas.sh
[2025-06-03 13:20:22] -rw-r--r-- 2 boinc boinc    508884 Jun  3 11:41 input.tar.gz
[2025-06-03 13:20:22] -rw------- 1 boinc boinc 178797096 Jun  3 13:19 HITS.pool.root.1
[2025-06-03 13:20:22] -rw------- 1 boinc boinc    901120 Jun  3 13:20 result.tar.gz
13:20:23 (236983): run_atlas exited; CPU time 44480.563349
13:20:23 (236983): called boinc_finish(0)

</stderr_txt>
]]>

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