Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:00:01 (25383): wrapper (7.7.26015): starting
20:00:01 (25383): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 20:00:01] Arguments: --nthreads 8
[2025-06-03 20:00:01] Threads: 8
[2025-06-03 20:00:01] Checking for CVMFS
[2025-06-03 20:00:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 20:00:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 20:00:02] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 20:00:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 20:00:03] 2.11.2.0 14280 32099 95900 146750 1 16 15509532 25165824 4638 130560 0 16715147 99.804 16464278 1838 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 20:00:03] CVMFS is ok
[2025-06-03 20:00:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 20:00:03] Checking for apptainer binary...
[2025-06-03 20:00:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 20:00:03] Running /usr/bin/apptainer --version
[2025-06-03 20:00:03] apptainer version 1.3.2-1.el7
[2025-06-03 20:00:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 20:00:08] cg-vwn302.simple-grid.lan
[2025-06-03 20:00:08] apptainer works
[2025-06-03 20:00:08] Set ATHENA_PROC_NUMBER=8
[2025-06-03 20:00:08] Set ATHENA_CORE_NUMBER=8
[2025-06-03 20:00:08] Starting ATLAS job with PandaID=6677443993
[2025-06-03 20:00:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 23:56:40]  *** The last 200 lines of the pilot log: ***
[2025-06-03 23:56:40] 2025-06-03 21:54:19,041 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 23:56:40] 2025-06-03 21:54:19,041 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 23:56:40] 2025-06-03 21:54:19,041 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 23:56:40] 2025-06-03 21:54:19,041 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 23:56:40] 2025-06-03 21:54:19,046 | INFO     | fitting pss+swap vs Time
[2025-06-03 23:56:40] 2025-06-03 21:54:19,047 | INFO     | sum of square deviations: 3485088600.0
[2025-06-03 23:56:40] 2025-06-03 21:54:19,048 | INFO     | sum of deviations: -56075824501.499985
[2025-06-03 23:56:40] 2025-06-03 21:54:19,048 | INFO     | mean x: 1748980741.5
[2025-06-03 23:56:40] 2025-06-03 21:54:19,049 | INFO     | mean y: 2542460.0223214286
[2025-06-03 23:56:40] 2025-06-03 21:54:19,049 | INFO     | -- intersect: 28144018437.665276
[2025-06-03 23:56:40] 2025-06-03 21:54:19,049 | INFO     | intersect: 28144018437.665276
[2025-06-03 23:56:40] 2025-06-03 21:54:19,049 | INFO     | chi2: 2.599822822813572
[2025-06-03 23:56:40] 2025-06-03 21:54:19,050 | INFO     | sum of square deviations: 3256879670.0
[2025-06-03 23:56:40] 2025-06-03 21:54:19,052 | INFO     | sum of deviations: -39354977587.00005
[2025-06-03 23:56:40] 2025-06-03 21:54:19,052 | INFO     | mean x: 1748980589.0
[2025-06-03 23:56:40] 2025-06-03 21:54:19,052 | INFO     | mean y: 2553455.0821917807
[2025-06-03 23:56:40] 2025-06-03 21:54:19,052 | INFO     | -- intersect: 21136613922.287952
[2025-06-03 23:56:40] 2025-06-03 21:54:19,052 | INFO     | intersect: 21136613922.287952
[2025-06-03 23:56:40] 2025-06-03 21:54:19,052 | INFO     | chi2: 1.8322808650512028
[2025-06-03 23:56:40] 2025-06-03 21:54:19,053 | INFO     | current chi2=1.8322808650512028 (change=29.52285636648587 %)
[2025-06-03 23:56:40] 2025-06-03 21:54:19,053 | INFO     | sum of square deviations: 3038856977.5
[2025-06-03 23:56:40] 2025-06-03 21:54:19,055 | INFO     | sum of deviations: -37667503782.00003
[2025-06-03 23:56:40] 2025-06-03 21:54:19,055 | INFO     | mean x: 1748980436.5
[2025-06-03 23:56:40] 2025-06-03 21:54:19,055 | INFO     | mean y: 2554635.644859813
[2025-06-03 23:56:40] 2025-06-03 21:54:19,055 | INFO     | -- intersect: 21681668754.633636
[2025-06-03 23:56:40] 2025-06-03 21:54:19,055 | INFO     | intersect: 21681668754.633636
[2025-06-03 23:56:40] 2025-06-03 21:54:19,055 | INFO     | chi2: 1.829879645364825
[2025-06-03 23:56:40] 2025-06-03 21:54:19,056 | INFO     | current chi2=1.829879645364825 (change=0.13105085209252304 %)
[2025-06-03 23:56:40] 2025-06-03 21:54:19,056 | INFO     | right removable region: 213
[2025-06-03 23:56:40] 2025-06-03 21:54:19,056 | INFO     | sum of square deviations: 3256879670.0
[2025-06-03 23:56:40] 2025-06-03 21:54:19,058 | INFO     | sum of deviations: -92873895619.00002
[2025-06-03 23:56:40] 2025-06-03 21:54:19,058 | INFO     | mean x: 1748980894.0
[2025-06-03 23:56:40] 2025-06-03 21:54:19,058 | INFO     | mean y: 2566827.5251141554
[2025-06-03 23:56:40] 2025-06-03 21:54:19,058 | INFO     | -- intersect: 49876889936.607414
[2025-06-03 23:56:40] 2025-06-03 21:54:19,058 | INFO     | intersect: 49876889936.607414
[2025-06-03 23:56:40] 2025-06-03 21:54:19,059 | INFO     | chi2: 1.0348362215031468
[2025-06-03 23:56:40] 2025-06-03 21:54:19,059 | INFO     | current chi2=1.0348362215031468 (change=60.195894411634185 %)
[2025-06-03 23:56:40] 2025-06-03 21:54:19,060 | INFO     | sum of square deviations: 3038856977.5
[2025-06-03 23:56:40] 2025-06-03 21:54:19,061 | INFO     | sum of deviations: -92692662606.00002
[2025-06-03 23:56:40] 2025-06-03 21:54:19,061 | INFO     | mean x: 1748981046.5
[2025-06-03 23:56:40] 2025-06-03 21:54:19,061 | INFO     | mean y: 2566664.831775701
[2025-06-03 23:56:40] 2025-06-03 21:54:19,061 | INFO     | -- intersect: 53350819395.33177
[2025-06-03 23:56:40] 2025-06-03 21:54:19,062 | INFO     | intersect: 53350819395.33177
[2025-06-03 23:56:40] 2025-06-03 21:54:19,062 | INFO     | chi2: 1.0058764940146474
[2025-06-03 23:56:40] 2025-06-03 21:54:19,062 | INFO     | current chi2=1.0058764940146474 (change=2.798484135628155 %)
[2025-06-03 23:56:40] 2025-06-03 21:54:19,062 | INFO     | left removable region: 20
[2025-06-03 23:56:40] 2025-06-03 21:54:19,062 | INFO     | sum of square deviations: 2229146912.0
[2025-06-03 23:56:40] 2025-06-03 21:54:19,064 | INFO     | sum of deviations: -63543668401.99999
[2025-06-03 23:56:40] 2025-06-03 21:54:19,064 | INFO     | mean x: 1748981016.0
[2025-06-03 23:56:40] 2025-06-03 21:54:19,064 | INFO     | mean y: 2573063.6269430052
[2025-06-03 23:56:40] 2025-06-03 21:54:19,064 | INFO     | -- intersect: 49858717189.35653
[2025-06-03 23:56:40] 2025-06-03 21:54:19,064 | INFO     | intersect: 49858717189.35653
[2025-06-03 23:56:40] 2025-06-03 21:54:19,065 | INFO     | chi2: 0.20259806489219473
[2025-06-03 23:56:40] 2025-06-03 21:54:19,065 | INFO     | -- intersect: 49858717189.35653
[2025-06-03 23:56:40] 2025-06-03 21:54:19,065 | INFO     | current memory leak: -28.51 B/s (using 193 data points, chi2=0.20)
[2025-06-03 23:56:40] 2025-06-03 21:54:19,066 | INFO     | ..............................
[2025-06-03 23:56:40] 2025-06-03 21:54:19,066 | INFO     | . Timing measurements:
[2025-06-03 23:56:40] 2025-06-03 21:54:19,066 | INFO     | . get job = 0 s
[2025-06-03 23:56:40] 2025-06-03 21:54:19,066 | INFO     | . initial setup = 9 s
[2025-06-03 23:56:40] 2025-06-03 21:54:19,066 | INFO     | . payload setup = 14 s
[2025-06-03 23:56:40] 2025-06-03 21:54:19,066 | INFO     | . stage-in = 0 s
[2025-06-03 23:56:40] 2025-06-03 21:54:19,067 | INFO     | . payload execution = 13656 s
[2025-06-03 23:56:40] 2025-06-03 21:54:19,067 | INFO     | . stage-out = 4 s
[2025-06-03 23:56:40] 2025-06-03 21:54:19,067 | INFO     | . log creation = 1 s
[2025-06-03 23:56:40] 2025-06-03 21:54:19,067 | INFO     | ..............................
[2025-06-03 23:56:40] 2025-06-03 21:54:19,196 | INFO     | 
[2025-06-03 23:56:40] 2025-06-03 21:54:19,197 | INFO     | job summary report
[2025-06-03 23:56:40] 2025-06-03 21:54:19,197 | INFO     | --------------------------------------------------
[2025-06-03 23:56:40] 2025-06-03 21:54:19,197 | INFO     | PanDA job id: 6677443993
[2025-06-03 23:56:40] 2025-06-03 21:54:19,197 | INFO     | task id: 45006595
[2025-06-03 23:56:40] 2025-06-03 21:54:19,197 | INFO     | errors: (none)
[2025-06-03 23:56:40] 2025-06-03 21:54:19,197 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 23:56:40] 2025-06-03 21:54:19,197 | INFO     | pilot state: finished 
[2025-06-03 23:56:40] 2025-06-03 21:54:19,197 | INFO     | transexitcode: 0
[2025-06-03 23:56:40] 2025-06-03 21:54:19,197 | INFO     | exeerrorcode: 0
[2025-06-03 23:56:40] 2025-06-03 21:54:19,197 | INFO     | exeerrordiag: 
[2025-06-03 23:56:40] 2025-06-03 21:54:19,197 | INFO     | exitcode: 0
[2025-06-03 23:56:40] 2025-06-03 21:54:19,198 | INFO     | exitmsg: OK
[2025-06-03 23:56:40] 2025-06-03 21:54:19,198 | INFO     | cpuconsumptiontime: 49635 s
[2025-06-03 23:56:40] 2025-06-03 21:54:19,198 | INFO     | nevents: 400
[2025-06-03 23:56:40] 2025-06-03 21:54:19,198 | INFO     | neventsw: 0
[2025-06-03 23:56:40] 2025-06-03 21:54:19,198 | INFO     | pid: 5325
[2025-06-03 23:56:40] 2025-06-03 21:54:19,198 | INFO     | pgrp: 5325
[2025-06-03 23:56:40] 2025-06-03 21:54:19,198 | INFO     | corecount: 8
[2025-06-03 23:56:40] 2025-06-03 21:54:19,198 | INFO     | event service: False
[2025-06-03 23:56:40] 2025-06-03 21:54:19,198 | INFO     | sizes: {0: 2404955, 1: 2405210, 2: 2405210, 13: 2405238, 23: 2405294, 34: 2405322, 45: 2405478, 56: 2405506, 66: 2405534, 73: 2405768, 77: 2405796, 13675: 2435785,
[2025-06-03 23:56:40] 2025-06-03 21:54:19,198 | INFO     | --------------------------------------------------
[2025-06-03 23:56:40] 2025-06-03 21:54:19,198 | INFO     | 
[2025-06-03 23:56:40] 2025-06-03 21:54:19,199 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-06-03 23:56:40] 2025-06-03 21:54:19,673 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 23:56:40] 2025-06-03 21:54:19,674 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 23:56:40] 2025-06-03 21:54:19,674 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 23:56:40] 2025-06-03 21:54:19,674 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 23:56:40] 2025-06-03 21:54:19,674 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 23:56:40] 2025-06-03 21:54:19,674 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 23:56:40] 2025-06-03 21:54:19,674 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 23:56:40] 2025-06-03 21:54:19,674 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 23:56:40] 2025-06-03 21:54:19,674 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 23:56:40] 2025-06-03 21:54:19,675 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 23:56:40] 2025-06-03 21:54:19,675 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 23:56:40] 2025-06-03 21:54:19,675 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 23:56:40] 2025-06-03 21:54:19,675 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 23:56:40] 2025-06-03 21:54:19,675 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 23:56:40] 2025-06-03 21:54:19,675 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 23:56:40] 2025-06-03 21:54:19,675 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 23:56:40] 2025-06-03 21:54:19,675 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 23:56:40] 2025-06-03 21:54:19,675 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 23:56:40] 2025-06-03 21:54:19,675 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 23:56:40] 2025-06-03 21:54:19,675 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 23:56:40] 2025-06-03 21:54:19,676 | INFO     | job 6677443993 has completed (purged errors)
[2025-06-03 23:56:40] 2025-06-03 21:54:19,676 | INFO     | overall cleanup function is called
[2025-06-03 23:56:40] 2025-06-03 21:54:20,684 | INFO     | --- collectZombieJob: --- 10, [5325]
[2025-06-03 23:56:40] 2025-06-03 21:54:20,685 | INFO     | zombie collector waiting for pid 5325
[2025-06-03 23:56:40] 2025-06-03 21:54:20,685 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 23:56:40] 2025-06-03 21:54:20,685 | INFO     | collected zombie processes
[2025-06-03 23:56:40] 2025-06-03 21:54:20,685 | INFO     | will attempt to kill all subprocesses of pid=5325
[2025-06-03 23:56:40] 2025-06-03 21:54:20,789 | INFO     | process IDs to be killed: [5325] (in reverse order)
[2025-06-03 23:56:40] 2025-06-03 21:54:21,691 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 23:56:40] 2025-06-03 21:54:21,691 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 23:56:40] 2025-06-03 21:54:21,694 | INFO     | did not find any defunct processes belonging to 5325
[2025-06-03 23:56:40] 2025-06-03 21:54:21,697 | INFO     | did not find any defunct processes belonging to 5325
[2025-06-03 23:56:40] 2025-06-03 21:54:21,698 | INFO     | ready for new job
[2025-06-03 23:56:40] 2025-06-03 21:54:21,698 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 23:56:40] 2025-06-03 21:54:21,700 | INFO     | **************************************
[2025-06-03 23:56:40] 2025-06-03 21:54:21,700 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 23:56:40] 2025-06-03 21:54:21,700 | INFO     | **************************************
[2025-06-03 23:56:40] 2025-06-03 21:54:21,700 | INFO     | 
[2025-06-03 23:56:40] 2025-06-03 21:54:21,701 | INFO     | pilot is running in a VM
[2025-06-03 23:56:40] 2025-06-03 21:54:21,701 | INFO     | architecture information:
[2025-06-03 23:56:40] 2025-06-03 21:54:21,701 | INFO     | executing command: cat /etc/os-release
[2025-06-03 23:56:40] 2025-06-03 21:54:21,893 | INFO     | cat /etc/os-release:
[2025-06-03 23:56:40] NAME="CentOS Linux"
[2025-06-03 23:56:40] VERSION="7 (Core)"
[2025-06-03 23:56:40] ID="centos"
[2025-06-03 23:56:40] ID_LIKE="rhel fedora"
[2025-06-03 23:56:40] VERSION_ID="7"
[2025-06-03 23:56:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 23:56:40] ANSI_COLOR="0;31"
[2025-06-03 23:56:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 23:56:40] HOME_URL="https://www.centos.org/"
[2025-06-03 23:56:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 23:56:40] 
[2025-06-03 23:56:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 23:56:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 23:56:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 23:56:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 23:56:40] 
[2025-06-03 23:56:40] 2025-06-03 21:54:21,893 | INFO     | **************************************
[2025-06-03 23:56:40] 2025-06-03 21:54:22,397 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-06-03 23:56:40] 2025-06-03 21:54:22,634 | INFO     | sufficient remaining disk space (497219010560 B)
[2025-06-03 23:56:40] 2025-06-03 21:54:22,635 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 23:56:40] 2025-06-03 21:54:22,635 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 23:56:40] 2025-06-03 21:54:22,635 | INFO     | update_server=False
[2025-06-03 23:56:40] 2025-06-03 21:54:22,635 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 23:56:40] 2025-06-03 21:54:22,635 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 23:56:40] 2025-06-03 21:54:22,635 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 23:56:40] 2025-06-03 21:54:22,636 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:56:40] 2025-06-03 21:54:22,637 | INFO     | aborting loop
[2025-06-03 23:56:40] 2025-06-03 21:54:22,643 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 23:56:40] 2025-06-03 21:54:22,644 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 23:56:40] 2025-06-03 21:54:22,644 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 23:56:40] 2025-06-03 21:54:22,644 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 23:56:40] 2025-06-03 21:54:23,024 | INFO     | all job control threads have been joined
[2025-06-03 23:56:40] 2025-06-03 21:54:23,035 | INFO     | all data control threads have been joined
[2025-06-03 23:56:40] 2025-06-03 21:54:23,642 | INFO     | [job] job monitor thread has finished
[2025-06-03 23:56:40] 2025-06-03 21:54:23,645 | INFO     | [job] retrieve thread has finished
[2025-06-03 23:56:40] 2025-06-03 21:54:23,687 | INFO     | [payload] failed_post thread has finished
[2025-06-03 23:56:40] 2025-06-03 21:54:23,941 | INFO     | all payload control threads have been joined
[2025-06-03 23:56:40] 2025-06-03 21:54:24,031 | INFO     | [job] control thread has finished
[2025-06-03 23:56:40] 2025-06-03 21:54:24,037 | INFO     | [data] copytool_in thread has finished
[2025-06-03 23:56:40] 2025-06-03 21:54:24,041 | INFO     | [data] control thread has finished
[2025-06-03 23:56:40] 2025-06-03 21:54:24,210 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:56:40] 2025-06-03 21:54:24,306 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 23:56:40] 2025-06-03 21:54:24,637 | INFO     | [payload] validate_post thread has finished
[2025-06-03 23:56:40] 2025-06-03 21:54:24,643 | INFO     | [data] copytool_out thread has finished
[2025-06-03 23:56:40] 2025-06-03 21:54:24,782 | INFO     | [job] validate thread has finished
[2025-06-03 23:56:40] 2025-06-03 21:54:24,947 | INFO     | [payload] control thread has finished
[2025-06-03 23:56:40] 2025-06-03 21:54:24,961 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 23:56:40] 2025-06-03 21:54:25,033 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 23:56:40] 2025-06-03 21:54:25,215 | INFO     | [job] queue monitor thread has finished
[2025-06-03 23:56:40] 2025-06-03 21:54:26,644 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 23:56:40] 2025-06-03 21:54:33,261 | INFO     | job.realtimelogging is not enabled
[2025-06-03 23:56:40] 2025-06-03 21:54:34,267 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 23:56:40] 2025-06-03 21:54:34,665 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139877713565504)>', '<ExcThread(monitor, started 139877110753024)>']
[2025-06-03 23:56:40] 2025-06-03 21:54:34,718 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 23:56:40] 2025-06-03 21:54:34,719 | INFO     | [monitor] control thread has ended
[2025-06-03 23:56:40] 2025-06-03 21:54:39,691 | INFO     | all workflow threads have been joined
[2025-06-03 23:56:40] 2025-06-03 21:54:39,692 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 23:56:40] 2025-06-03 21:54:39,692 | INFO     | traces error code: 0
[2025-06-03 23:56:40] 2025-06-03 21:54:39,692 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 23:56:40] 2025-06-03 21:54:40,150 [wrapper] ==== pilot stdout END ====
[2025-06-03 23:56:40] 2025-06-03 21:54:40,240 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 23:56:40] 2025-06-03 21:54:40,356 [wrapper] pilotpid: 29099
[2025-06-03 23:56:40] 2025-06-03 21:54:40,430 [wrapper] Pilot exit status: 0
[2025-06-03 23:56:40] 2025-06-03 21:54:40,959 [wrapper] pandaids: 6677443993
[2025-06-03 23:56:40] 2025-06-03 21:54:41,608 [wrapper] cleanup supervisor_pilot 30640 29100
[2025-06-03 23:56:40] 2025-06-03 21:54:41,667 [wrapper] Test setup, not cleaning
[2025-06-03 23:56:40] 2025-06-03 21:54:41,772 [wrapper] apfmon messages muted
[2025-06-03 23:56:40] 2025-06-03 21:54:41,875 [wrapper] ==== wrapper stdout END ====
[2025-06-03 23:56:40] 2025-06-03 21:54:41,965 [wrapper] ==== wrapper stderr END ====
[2025-06-03 23:56:40]  *** Error codes and diagnostics ***
[2025-06-03 23:56:40]     "exeErrorCode": 0,
[2025-06-03 23:56:40]     "exeErrorDiag": "",
[2025-06-03 23:56:40]     "pilotErrorCode": 0,
[2025-06-03 23:56:40]     "pilotErrorDiag": "",
[2025-06-03 23:56:40]  *** Listing of results directory ***
[2025-06-03 23:56:40] total 396452
[2025-06-03 23:56:40] -rw-r--r--. 1 boinc boinc    495897 Jun  3 04:22 pilot3.tar.gz
[2025-06-03 23:56:40] -rw-r--r--. 1 boinc boinc      5111 Jun  3 04:33 queuedata.json
[2025-06-03 23:56:40] -rwx------. 1 boinc boinc     37140 Jun  3 04:33 runpilot2-wrapper.sh
[2025-06-03 23:56:40] -rw-r--r--. 1 boinc boinc       100 Jun  3 20:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 23:56:40] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 20:00 run_atlas
[2025-06-03 23:56:40] -rw-r--r--. 1 boinc boinc       105 Jun  3 20:00 job.xml
[2025-06-03 23:56:40] -rw-r--r--. 1 boinc boinc      6391 Jun  3 20:00 init_data.xml
[2025-06-03 23:56:40] -rw-r--r--. 2 boinc boinc 217898559 Jun  3 20:00 EVNT.45006593._000697.pool.root.1
[2025-06-03 23:56:40] -rw-r--r--. 2 boinc boinc     15093 Jun  3 20:00 start_atlas.sh
[2025-06-03 23:56:40] drwxrwx--x. 2 boinc boinc        68 Jun  3 20:00 shared
[2025-06-03 23:56:40] -rw-r--r--. 2 boinc boinc    508876 Jun  3 20:00 input.tar.gz
[2025-06-03 23:56:40] -rw-r--r--. 1 boinc boinc         0 Jun  3 20:00 boinc_lockfile
[2025-06-03 23:56:40] -rw-r--r--. 1 boinc boinc      2524 Jun  3 20:00 pandaJob.out
[2025-06-03 23:56:40] -rw-------. 1 boinc boinc    985078 Jun  3 20:03 agis_schedconf.cvmfs.json
[2025-06-03 23:56:40] drwx------. 4 boinc boinc      4096 Jun  3 20:03 pilot3
[2025-06-03 23:56:40] -rw-------. 1 boinc boinc 181094036 Jun  3 23:51 HITS.45006595._017414.pool.root.1
[2025-06-03 23:56:40] -rw-r--r--. 1 boinc boinc       530 Jun  3 23:51 boinc_task_state.xml
[2025-06-03 23:56:40] -rw-------. 1 boinc boinc      1020 Jun  3 23:52 memory_monitor_summary.json
[2025-06-03 23:56:40] -rw-------. 1 boinc boinc   1603667 Jun  3 23:52 agis_ddmendpoints.agis.ALL.json
[2025-06-03 23:56:40] -rw-------. 1 boinc boinc    381513 Jun  3 23:53 log.45006595._017414.job.log.tgz.1
[2025-06-03 23:56:40] -rw-------. 1 boinc boinc        95 Jun  3 23:53 pilot_heartbeat.json
[2025-06-03 23:56:40] -rw-------. 1 boinc boinc      7687 Jun  3 23:54 heartbeat.json
[2025-06-03 23:56:40] -rw-------. 1 boinc boinc      4611 Jun  3 23:54 pilotlog.txt
[2025-06-03 23:56:40] -rw-------. 1 boinc boinc   1196023 Jun  3 23:54 log.45006595._017414.job.log.1
[2025-06-03 23:56:40] -rw-------. 1 boinc boinc       357 Jun  3 23:54 output.list
[2025-06-03 23:56:40] -rw-r--r--. 1 boinc boinc       620 Jun  3 23:54 runtime_log
[2025-06-03 23:56:40] -rw-------. 1 boinc boinc   1597440 Jun  3 23:54 result.tar.gz
[2025-06-03 23:56:40] -rw-r--r--. 1 boinc boinc      8659 Jun  3 23:54 runtime_log.err
[2025-06-03 23:56:40] -rw-------. 1 boinc boinc       656 Jun  3 23:54 HXwNDmVeWg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmqbhKDmcBchdm.diag
[2025-06-03 23:56:40] -rw-r--r--. 1 boinc boinc      8192 Jun  3 23:56 boinc_mmap_file
[2025-06-03 23:56:40] -rw-r--r--. 1 boinc boinc        28 Jun  3 23:56 wrapper_checkpoint.txt
[2025-06-03 23:56:40] -rw-r--r--. 1 boinc boinc     20510 Jun  3 23:56 stderr.txt
[2025-06-03 23:56:40] HITS file was successfully produced:
[2025-06-03 23:56:40] -rw-------. 1 boinc boinc 181094036 Jun  3 23:51 shared/HITS.pool.root.1
[2025-06-03 23:56:40]  *** Contents of shared directory: ***
[2025-06-03 23:56:40] total 391720
[2025-06-03 23:56:40] -rw-r--r--. 2 boinc boinc 217898559 Jun  3 20:00 ATLAS.root_0
[2025-06-03 23:56:40] -rw-r--r--. 2 boinc boinc     15093 Jun  3 20:00 start_atlas.sh
[2025-06-03 23:56:40] -rw-r--r--. 2 boinc boinc    508876 Jun  3 20:00 input.tar.gz
[2025-06-03 23:56:40] -rw-------. 1 boinc boinc 181094036 Jun  3 23:51 HITS.pool.root.1
[2025-06-03 23:56:40] -rw-------. 1 boinc boinc   1597440 Jun  3 23:54 result.tar.gz
23:56:42 (25383): run_atlas exited; CPU time 49813.373956
23:56:42 (25383): called boinc_finish(0)

</stderr_txt>
]]>

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