Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:44:59 (17454): wrapper (7.7.26015): starting
15:44:59 (17454): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 15:44:59] Arguments: --nthreads 8
[2025-06-03 15:44:59] Threads: 8
[2025-06-03 15:44:59] Checking for CVMFS
[2025-06-03 15:44:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 15:45:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 15:45:00] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 15:45:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 15:45:01] 2.11.2.0 16161 31833 92444 146743 2 109 12742407 25165825 4307 130560 0 16653295 99.828 16870264 2094 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 15:45:01] CVMFS is ok
[2025-06-03 15:45:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 15:45:01] Checking for apptainer binary...
[2025-06-03 15:45:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 15:45:01] Running /usr/bin/apptainer --version
[2025-06-03 15:45:01] apptainer version 1.3.2-1.el7
[2025-06-03 15:45:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 15:45:03] cg-vwn420.simple-grid.lan
[2025-06-03 15:45:03] apptainer works
[2025-06-03 15:45:03] Set ATHENA_PROC_NUMBER=8
[2025-06-03 15:45:03] Set ATHENA_CORE_NUMBER=8
[2025-06-03 15:45:03] Starting ATLAS job with PandaID=6677443936
[2025-06-03 15:45:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 19:38:46]  *** The last 200 lines of the pilot log: ***
[2025-06-03 19:38:46] 2025-06-03 17:38:31,426 | INFO     | extracted standard info from prmon json
[2025-06-03 19:38:46] 2025-06-03 17:38:31,427 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 19:38:46] 2025-06-03 17:38:31,427 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 19:38:46] 2025-06-03 17:38:31,427 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 19:38:46] 2025-06-03 17:38:31,427 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 19:38:46] 2025-06-03 17:38:31,432 | INFO     | fitting pss+swap vs Time
[2025-06-03 19:38:46] 2025-06-03 17:38:31,433 | INFO     | sum of square deviations: 3485088600.0
[2025-06-03 19:38:46] 2025-06-03 17:38:31,434 | INFO     | sum of deviations: -37426001.000003815
[2025-06-03 19:38:46] 2025-06-03 17:38:31,435 | INFO     | mean x: 1748965476.5
[2025-06-03 19:38:46] 2025-06-03 17:38:31,435 | INFO     | mean y: 2523519.0535714286
[2025-06-03 19:38:46] 2025-06-03 17:38:31,435 | INFO     | -- intersect: 21305475.894628827
[2025-06-03 19:38:46] 2025-06-03 17:38:31,435 | INFO     | intersect: 21305475.894628827
[2025-06-03 19:38:46] 2025-06-03 17:38:31,435 | INFO     | chi2: 6.292142809842793
[2025-06-03 19:38:46] 2025-06-03 17:38:31,436 | INFO     | sum of square deviations: 3256879670.0
[2025-06-03 19:38:46] 2025-06-03 17:38:31,437 | INFO     | sum of deviations: 15969482860.9999
[2025-06-03 19:38:46] 2025-06-03 17:38:31,437 | INFO     | mean x: 1748965324.0
[2025-06-03 19:38:46] 2025-06-03 17:38:31,438 | INFO     | mean y: 2534037.228310502
[2025-06-03 19:38:46] 2025-06-03 17:38:31,438 | INFO     | -- intersect: -8573180940.322929
[2025-06-03 19:38:46] 2025-06-03 17:38:31,438 | INFO     | intersect: -8573180940.322929
[2025-06-03 19:38:46] 2025-06-03 17:38:31,438 | INFO     | chi2: 5.579496106223408
[2025-06-03 19:38:46] 2025-06-03 17:38:31,438 | INFO     | current chi2=5.579496106223408 (change=11.325977892691704 %)
[2025-06-03 19:38:46] 2025-06-03 17:38:31,438 | INFO     | right removable region: 218
[2025-06-03 19:38:46] 2025-06-03 17:38:31,439 | INFO     | sum of square deviations: 3256879670.0
[2025-06-03 19:38:46] 2025-06-03 17:38:31,440 | INFO     | sum of deviations: -79868476628.99998
[2025-06-03 19:38:46] 2025-06-03 17:38:31,441 | INFO     | mean x: 1748965629.0
[2025-06-03 19:38:46] 2025-06-03 17:38:31,441 | INFO     | mean y: 2576815.570776256
[2025-06-03 19:38:46] 2025-06-03 17:38:31,441 | INFO     | -- intersect: 42892469786.25912
[2025-06-03 19:38:46] 2025-06-03 17:38:31,441 | INFO     | intersect: 42892469786.25912
[2025-06-03 19:38:46] 2025-06-03 17:38:31,442 | INFO     | chi2: 1.525091644750336
[2025-06-03 19:38:46] 2025-06-03 17:38:31,442 | INFO     | current chi2=1.525091644750336 (change=75.76196709387085 %)
[2025-06-03 19:38:46] 2025-06-03 17:38:31,442 | INFO     | sum of square deviations: 3038856977.5
[2025-06-03 19:38:46] 2025-06-03 17:38:31,444 | INFO     | sum of deviations: -99086837149.49998
[2025-06-03 19:38:46] 2025-06-03 17:38:31,444 | INFO     | mean x: 1748965781.5
[2025-06-03 19:38:46] 2025-06-03 17:38:31,445 | INFO     | mean y: 2590133.285046729
[2025-06-03 19:38:46] 2025-06-03 17:38:31,445 | INFO     | -- intersect: 57030442662.925354
[2025-06-03 19:38:46] 2025-06-03 17:38:31,445 | INFO     | intersect: 57030442662.925354
[2025-06-03 19:38:46] 2025-06-03 17:38:31,445 | INFO     | chi2: 1.0043768151745005
[2025-06-03 19:38:46] 2025-06-03 17:38:31,446 | INFO     | current chi2=1.0043768151745005 (change=34.14318289449935 %)
[2025-06-03 19:38:46] 2025-06-03 17:38:31,446 | INFO     | sum of square deviations: 2830787960.0
[2025-06-03 19:38:46] 2025-06-03 17:38:31,448 | INFO     | sum of deviations: -97127973216.0
[2025-06-03 19:38:46] 2025-06-03 17:38:31,448 | INFO     | mean x: 1748965934.0
[2025-06-03 19:38:46] 2025-06-03 17:38:31,448 | INFO     | mean y: 2588669.215311005
[2025-06-03 19:38:46] 2025-06-03 17:38:31,448 | INFO     | -- intersect: 60011857746.807556
[2025-06-03 19:38:46] 2025-06-03 17:38:31,448 | INFO     | intersect: 60011857746.807556
[2025-06-03 19:38:46] 2025-06-03 17:38:31,448 | INFO     | chi2: 0.9849658200256198
[2025-06-03 19:38:46] 2025-06-03 17:38:31,448 | INFO     | current chi2=0.9849658200256198 (change=1.9326407037291282 %)
[2025-06-03 19:38:46] 2025-06-03 17:38:31,448 | INFO     | left removable region: 30
[2025-06-03 19:38:46] 2025-06-03 17:38:31,449 | INFO     | sum of square deviations: 2060343747.0
[2025-06-03 19:38:46] 2025-06-03 17:38:31,450 | INFO     | sum of deviations: -65433689657.0
[2025-06-03 19:38:46] 2025-06-03 17:38:31,450 | INFO     | mean x: 1748966208.5
[2025-06-03 19:38:46] 2025-06-03 17:38:31,450 | INFO     | mean y: 2589927.5425531915
[2025-06-03 19:38:46] 2025-06-03 17:38:31,451 | INFO     | -- intersect: 55547356316.25961
[2025-06-03 19:38:46] 2025-06-03 17:38:31,451 | INFO     | intersect: 55547356316.25961
[2025-06-03 19:38:46] 2025-06-03 17:38:31,451 | INFO     | chi2: 0.19160361208831345
[2025-06-03 19:38:46] 2025-06-03 17:38:31,451 | INFO     | -- intersect: 55547356316.25961
[2025-06-03 19:38:46] 2025-06-03 17:38:31,451 | INFO     | current memory leak: -31.76 B/s (using 188 data points, chi2=0.19)
[2025-06-03 19:38:46] 2025-06-03 17:38:31,452 | INFO     | ..............................
[2025-06-03 19:38:46] 2025-06-03 17:38:31,452 | INFO     | . Timing measurements:
[2025-06-03 19:38:46] 2025-06-03 17:38:31,452 | INFO     | . get job = 0 s
[2025-06-03 19:38:46] 2025-06-03 17:38:31,452 | INFO     | . initial setup = 2 s
[2025-06-03 19:38:46] 2025-06-03 17:38:31,452 | INFO     | . payload setup = 64 s
[2025-06-03 19:38:46] 2025-06-03 17:38:31,453 | INFO     | . stage-in = 0 s
[2025-06-03 19:38:46] 2025-06-03 17:38:31,453 | INFO     | . payload execution = 13721 s
[2025-06-03 19:38:46] 2025-06-03 17:38:31,453 | INFO     | . stage-out = 2 s
[2025-06-03 19:38:46] 2025-06-03 17:38:31,453 | INFO     | . log creation = 0 s
[2025-06-03 19:38:46] 2025-06-03 17:38:31,453 | INFO     | ..............................
[2025-06-03 19:38:46] 2025-06-03 17:38:31,846 | INFO     | 
[2025-06-03 19:38:46] 2025-06-03 17:38:31,846 | INFO     | job summary report
[2025-06-03 19:38:46] 2025-06-03 17:38:31,846 | INFO     | --------------------------------------------------
[2025-06-03 19:38:46] 2025-06-03 17:38:31,846 | INFO     | PanDA job id: 6677443936
[2025-06-03 19:38:46] 2025-06-03 17:38:31,846 | INFO     | task id: 45006595
[2025-06-03 19:38:46] 2025-06-03 17:38:31,846 | INFO     | errors: (none)
[2025-06-03 19:38:46] 2025-06-03 17:38:31,847 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 19:38:46] 2025-06-03 17:38:31,847 | INFO     | pilot state: finished 
[2025-06-03 19:38:46] 2025-06-03 17:38:31,847 | INFO     | transexitcode: 0
[2025-06-03 19:38:46] 2025-06-03 17:38:31,847 | INFO     | exeerrorcode: 0
[2025-06-03 19:38:46] 2025-06-03 17:38:31,847 | INFO     | exeerrordiag: 
[2025-06-03 19:38:46] 2025-06-03 17:38:31,847 | INFO     | exitcode: 0
[2025-06-03 19:38:46] 2025-06-03 17:38:31,847 | INFO     | exitmsg: OK
[2025-06-03 19:38:46] 2025-06-03 17:38:31,847 | INFO     | cpuconsumptiontime: 50589 s
[2025-06-03 19:38:46] 2025-06-03 17:38:31,847 | INFO     | nevents: 400
[2025-06-03 19:38:46] 2025-06-03 17:38:31,847 | INFO     | neventsw: 0
[2025-06-03 19:38:46] 2025-06-03 17:38:31,847 | INFO     | pid: 29034
[2025-06-03 19:38:46] 2025-06-03 17:38:31,847 | INFO     | pgrp: 29034
[2025-06-03 19:38:46] 2025-06-03 17:38:31,848 | INFO     | corecount: 8
[2025-06-03 19:38:46] 2025-06-03 17:38:31,848 | INFO     | event service: False
[2025-06-03 19:38:46] 2025-06-03 17:38:31,848 | INFO     | sizes: {0: 2405011, 1: 2405210, 2: 2405210, 12: 2405238, 23: 2405266, 34: 2405294, 44: 2405450, 47: 2405684, 55: 2405740, 13789: 2435462, 13791: 2444403, 13794: 24
[2025-06-03 19:38:46] 2025-06-03 17:38:31,848 | INFO     | --------------------------------------------------
[2025-06-03 19:38:46] 2025-06-03 17:38:31,848 | INFO     | 
[2025-06-03 19:38:46] 2025-06-03 17:38:31,848 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-06-03 19:38:46] 2025-06-03 17:38:31,893 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 19:38:46] 2025-06-03 17:38:31,893 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 19:38:46] 2025-06-03 17:38:31,893 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 19:38:46] 2025-06-03 17:38:31,894 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 19:38:46] 2025-06-03 17:38:31,894 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 19:38:46] 2025-06-03 17:38:31,894 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 19:38:46] 2025-06-03 17:38:31,894 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 19:38:46] 2025-06-03 17:38:31,894 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 19:38:46] 2025-06-03 17:38:31,894 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 19:38:46] 2025-06-03 17:38:31,894 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 19:38:46] 2025-06-03 17:38:31,894 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 19:38:46] 2025-06-03 17:38:31,894 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 19:38:46] 2025-06-03 17:38:31,894 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 19:38:46] 2025-06-03 17:38:31,895 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 19:38:46] 2025-06-03 17:38:31,895 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 19:38:46] 2025-06-03 17:38:31,895 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 19:38:46] 2025-06-03 17:38:31,895 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 19:38:46] 2025-06-03 17:38:31,895 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 19:38:46] 2025-06-03 17:38:31,895 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 19:38:46] 2025-06-03 17:38:31,895 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 19:38:46] 2025-06-03 17:38:31,895 | INFO     | job 6677443936 has completed (purged errors)
[2025-06-03 19:38:46] 2025-06-03 17:38:31,895 | INFO     | overall cleanup function is called
[2025-06-03 19:38:46] 2025-06-03 17:38:32,905 | INFO     | --- collectZombieJob: --- 10, [29034]
[2025-06-03 19:38:46] 2025-06-03 17:38:32,905 | INFO     | zombie collector waiting for pid 29034
[2025-06-03 19:38:46] 2025-06-03 17:38:32,906 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 19:38:46] 2025-06-03 17:38:32,906 | INFO     | collected zombie processes
[2025-06-03 19:38:46] 2025-06-03 17:38:32,906 | INFO     | will attempt to kill all subprocesses of pid=29034
[2025-06-03 19:38:46] 2025-06-03 17:38:33,006 | INFO     | process IDs to be killed: [29034] (in reverse order)
[2025-06-03 19:38:46] 2025-06-03 17:38:33,141 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 19:38:46] 2025-06-03 17:38:33,142 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 19:38:46] 2025-06-03 17:38:33,145 | INFO     | did not find any defunct processes belonging to 29034
[2025-06-03 19:38:46] 2025-06-03 17:38:33,148 | INFO     | did not find any defunct processes belonging to 29034
[2025-06-03 19:38:46] 2025-06-03 17:38:33,149 | INFO     | ready for new job
[2025-06-03 19:38:46] 2025-06-03 17:38:33,149 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 19:38:46] 2025-06-03 17:38:33,151 | INFO     | **************************************
[2025-06-03 19:38:46] 2025-06-03 17:38:33,151 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 19:38:46] 2025-06-03 17:38:33,151 | INFO     | **************************************
[2025-06-03 19:38:46] 2025-06-03 17:38:33,151 | INFO     | 
[2025-06-03 19:38:46] 2025-06-03 17:38:33,157 | INFO     | pilot is running in a VM
[2025-06-03 19:38:46] 2025-06-03 17:38:33,157 | INFO     | architecture information:
[2025-06-03 19:38:46] 2025-06-03 17:38:33,163 | INFO     | executing command: cat /etc/os-release
[2025-06-03 19:38:46] 2025-06-03 17:38:33,185 | INFO     | cat /etc/os-release:
[2025-06-03 19:38:46] NAME="CentOS Linux"
[2025-06-03 19:38:46] VERSION="7 (Core)"
[2025-06-03 19:38:46] ID="centos"
[2025-06-03 19:38:46] ID_LIKE="rhel fedora"
[2025-06-03 19:38:46] VERSION_ID="7"
[2025-06-03 19:38:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 19:38:46] ANSI_COLOR="0;31"
[2025-06-03 19:38:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 19:38:46] HOME_URL="https://www.centos.org/"
[2025-06-03 19:38:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 19:38:46] 
[2025-06-03 19:38:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 19:38:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 19:38:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 19:38:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 19:38:46] 
[2025-06-03 19:38:46] 2025-06-03 17:38:33,186 | INFO     | **************************************
[2025-06-03 19:38:46] 2025-06-03 17:38:33,688 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-06-03 19:38:46] 2025-06-03 17:38:33,799 | INFO     | sufficient remaining disk space (497085841408 B)
[2025-06-03 19:38:46] 2025-06-03 17:38:33,800 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 19:38:46] 2025-06-03 17:38:33,800 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 19:38:46] 2025-06-03 17:38:33,800 | INFO     | update_server=False
[2025-06-03 19:38:46] 2025-06-03 17:38:33,800 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 19:38:46] 2025-06-03 17:38:33,801 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 19:38:46] 2025-06-03 17:38:33,806 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 19:38:46] 2025-06-03 17:38:33,807 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 19:38:46] 2025-06-03 17:38:33,807 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 19:38:46] 2025-06-03 17:38:33,807 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 19:38:46] 2025-06-03 17:38:34,286 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 19:38:46] 2025-06-03 17:38:34,287 | INFO     | aborting loop
[2025-06-03 19:38:46] 2025-06-03 17:38:34,410 | INFO     | all payload control threads have been joined
[2025-06-03 19:38:46] 2025-06-03 17:38:34,414 | INFO     | all data control threads have been joined
[2025-06-03 19:38:46] 2025-06-03 17:38:34,598 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 19:38:46] 2025-06-03 17:38:34,806 | INFO     | [job] retrieve thread has finished
[2025-06-03 19:38:46] 2025-06-03 17:38:34,841 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 19:38:46] 2025-06-03 17:38:34,956 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 19:38:46] 2025-06-03 17:38:34,968 | INFO     | all job control threads have been joined
[2025-06-03 19:38:46] 2025-06-03 17:38:34,992 | INFO     | [payload] failed_post thread has finished
[2025-06-03 19:38:46] 2025-06-03 17:38:35,180 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 19:38:46] 2025-06-03 17:38:35,292 | INFO     | [job] job monitor thread has finished
[2025-06-03 19:38:46] 2025-06-03 17:38:35,365 | INFO     | [payload] validate_post thread has finished
[2025-06-03 19:38:46] 2025-06-03 17:38:35,416 | INFO     | [payload] control thread has finished
[2025-06-03 19:38:46] 2025-06-03 17:38:35,419 | INFO     | [data] control thread has finished
[2025-06-03 19:38:46] 2025-06-03 17:38:35,450 | INFO     | [data] copytool_in thread has finished
[2025-06-03 19:38:46] 2025-06-03 17:38:35,871 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 19:38:46] 2025-06-03 17:38:35,974 | INFO     | [job] control thread has finished
[2025-06-03 19:38:46] 2025-06-03 17:38:36,267 | INFO     | [job] validate thread has finished
[2025-06-03 19:38:46] 2025-06-03 17:38:36,605 | INFO     | [data] copytool_out thread has finished
[2025-06-03 19:38:46] 2025-06-03 17:38:36,608 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 19:38:46] 2025-06-03 17:38:37,613 | INFO     | [job] queue monitor thread has finished
[2025-06-03 19:38:46] 2025-06-03 17:38:37,810 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 19:38:46] 2025-06-03 17:38:38,943 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139755195201344)>', '<ExcThread(monitor, started 139754897118976)>']
[2025-06-03 19:38:46] 2025-06-03 17:38:39,839 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 19:38:46] 2025-06-03 17:38:39,839 | INFO     | [monitor] control thread has ended
[2025-06-03 19:38:46] 2025-06-03 17:38:43,969 | INFO     | all workflow threads have been joined
[2025-06-03 19:38:46] 2025-06-03 17:38:43,969 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 19:38:46] 2025-06-03 17:38:43,969 | INFO     | traces error code: 0
[2025-06-03 19:38:46] 2025-06-03 17:38:43,970 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 19:38:46] 2025-06-03 17:38:44,177 [wrapper] ==== pilot stdout END ====
[2025-06-03 19:38:46] 2025-06-03 17:38:44,185 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 19:38:46] 2025-06-03 17:38:44,194 [wrapper] pilotpid: 21674
[2025-06-03 19:38:46] 2025-06-03 17:38:44,221 [wrapper] Pilot exit status: 0
[2025-06-03 19:38:46] 2025-06-03 17:38:44,604 [wrapper] pandaids: 6677443936
[2025-06-03 19:38:46] 2025-06-03 17:38:45,142 [wrapper] cleanup supervisor_pilot  2266 21675
[2025-06-03 19:38:46] 2025-06-03 17:38:45,262 [wrapper] Test setup, not cleaning
[2025-06-03 19:38:46] 2025-06-03 17:38:45,367 [wrapper] apfmon messages muted
[2025-06-03 19:38:46] 2025-06-03 17:38:45,489 [wrapper] ==== wrapper stdout END ====
[2025-06-03 19:38:46] 2025-06-03 17:38:45,572 [wrapper] ==== wrapper stderr END ====
[2025-06-03 19:38:46]  *** Error codes and diagnostics ***
[2025-06-03 19:38:46]     "exeErrorCode": 0,
[2025-06-03 19:38:46]     "exeErrorDiag": "",
[2025-06-03 19:38:46]     "pilotErrorCode": 0,
[2025-06-03 19:38:46]     "pilotErrorDiag": "",
[2025-06-03 19:38:46]  *** Listing of results directory ***
[2025-06-03 19:38:46] total 391436
[2025-06-03 19:38:46] -rw-r--r--. 1 boinc boinc    495897 Jun  3 04:22 pilot3.tar.gz
[2025-06-03 19:38:46] -rw-r--r--. 1 boinc boinc      5111 Jun  3 04:30 queuedata.json
[2025-06-03 19:38:46] -rwx------. 1 boinc boinc     37140 Jun  3 04:33 runpilot2-wrapper.sh
[2025-06-03 19:38:46] -rw-r--r--. 1 boinc boinc       100 Jun  3 15:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 19:38:46] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 15:44 run_atlas
[2025-06-03 19:38:46] -rw-r--r--. 1 boinc boinc       105 Jun  3 15:44 job.xml
[2025-06-03 19:38:46] -rw-r--r--. 1 boinc boinc      6392 Jun  3 15:44 init_data.xml
[2025-06-03 19:38:46] -rw-r--r--. 2 boinc boinc 214773270 Jun  3 15:44 EVNT.45006593._000695.pool.root.1
[2025-06-03 19:38:46] -rw-r--r--. 2 boinc boinc     15093 Jun  3 15:44 start_atlas.sh
[2025-06-03 19:38:46] drwxrwx--x. 2 boinc boinc        68 Jun  3 15:44 shared
[2025-06-03 19:38:46] -rw-r--r--. 2 boinc boinc    508878 Jun  3 15:44 input.tar.gz
[2025-06-03 19:38:46] -rw-r--r--. 1 boinc boinc         0 Jun  3 15:44 boinc_lockfile
[2025-06-03 19:38:46] -rw-r--r--. 1 boinc boinc      2524 Jun  3 15:45 pandaJob.out
[2025-06-03 19:38:46] -rw-------. 1 boinc boinc    982724 Jun  3 15:46 agis_schedconf.cvmfs.json
[2025-06-03 19:38:46] drwx------. 4 boinc boinc      4096 Jun  3 15:46 pilot3
[2025-06-03 19:38:46] -rw-------. 1 boinc boinc 179088704 Jun  3 19:37 HITS.45006595._017357.pool.root.1
[2025-06-03 19:38:46] -rw-r--r--. 1 boinc boinc       531 Jun  3 19:37 boinc_task_state.xml
[2025-06-03 19:38:46] -rw-------. 1 boinc boinc      1021 Jun  3 19:38 memory_monitor_summary.json
[2025-06-03 19:38:46] -rw-------. 1 boinc boinc        95 Jun  3 19:38 pilot_heartbeat.json
[2025-06-03 19:38:46] -rw-------. 1 boinc boinc   1603667 Jun  3 19:38 agis_ddmendpoints.agis.ALL.json
[2025-06-03 19:38:46] -rw-------. 1 boinc boinc    373754 Jun  3 19:38 log.45006595._017357.job.log.tgz.1
[2025-06-03 19:38:46] -rw-r--r--. 1 boinc boinc      8192 Jun  3 19:38 boinc_mmap_file
[2025-06-03 19:38:46] -rw-r--r--. 1 boinc boinc        28 Jun  3 19:38 wrapper_checkpoint.txt
[2025-06-03 19:38:46] -rw-------. 1 boinc boinc      7693 Jun  3 19:38 heartbeat.json
[2025-06-03 19:38:46] -rw-------. 1 boinc boinc      4539 Jun  3 19:38 pilotlog.txt
[2025-06-03 19:38:46] -rw-------. 1 boinc boinc   1201216 Jun  3 19:38 log.45006595._017357.job.log.1
[2025-06-03 19:38:46] -rw-------. 1 boinc boinc       357 Jun  3 19:38 output.list
[2025-06-03 19:38:46] -rw-r--r--. 1 boinc boinc       620 Jun  3 19:38 runtime_log
[2025-06-03 19:38:46] -rw-------. 1 boinc boinc   1597440 Jun  3 19:38 result.tar.gz
[2025-06-03 19:38:46] -rw-r--r--. 1 boinc boinc      8659 Jun  3 19:38 runtime_log.err
[2025-06-03 19:38:46] -rw-------. 1 boinc boinc       656 Jun  3 19:38 MkoLDmhdWg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHbhKDm5SFFLn.diag
[2025-06-03 19:38:46] -rw-r--r--. 1 boinc boinc     20509 Jun  3 19:38 stderr.txt
[2025-06-03 19:38:46] HITS file was successfully produced:
[2025-06-03 19:38:46] -rw-------. 1 boinc boinc 179088704 Jun  3 19:37 shared/HITS.pool.root.1
[2025-06-03 19:38:46]  *** Contents of shared directory: ***
[2025-06-03 19:38:46] total 386708
[2025-06-03 19:38:46] -rw-r--r--. 2 boinc boinc 214773270 Jun  3 15:44 ATLAS.root_0
[2025-06-03 19:38:46] -rw-r--r--. 2 boinc boinc     15093 Jun  3 15:44 start_atlas.sh
[2025-06-03 19:38:46] -rw-r--r--. 2 boinc boinc    508878 Jun  3 15:44 input.tar.gz
[2025-06-03 19:38:46] -rw-------. 1 boinc boinc 179088704 Jun  3 19:37 HITS.pool.root.1
[2025-06-03 19:38:46] -rw-------. 1 boinc boinc   1597440 Jun  3 19:38 result.tar.gz
19:38:47 (17454): run_atlas exited; CPU time 50769.590063
19:38:47 (17454): called boinc_finish(0)

</stderr_txt>
]]>

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