Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:54:54 (21944): wrapper (7.7.26015): starting
16:54:54 (21944): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 16:54:54] Arguments: --nthreads 8
[2025-06-03 16:54:54] Threads: 8
[2025-06-03 16:54:54] Checking for CVMFS
[2025-06-03 16:54:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 16:54:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 16:55:25] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 16:55:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 16:55:27] 2.11.2.0 3973 32057 94728 146743 2 112 23977395 25165824 3869 130560 0 17334435 99.754 20419168 2673 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 16:55:27] CVMFS is ok
[2025-06-03 16:55:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 16:55:27] Checking for apptainer binary...
[2025-06-03 16:55:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 16:55:27] Running /usr/bin/apptainer --version
[2025-06-03 16:55:27] apptainer version 1.3.2-1.el7
[2025-06-03 16:55:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 16:56:15] cg-vwn471.simple-grid.lan
[2025-06-03 16:56:15] apptainer works
[2025-06-03 16:56:15] Set ATHENA_PROC_NUMBER=8
[2025-06-03 16:56:15] Set ATHENA_CORE_NUMBER=8
[2025-06-03 16:56:15] Starting ATLAS job with PandaID=6677443433
[2025-06-03 16:56:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 21:26:58]  *** The last 200 lines of the pilot log: ***
[2025-06-03 21:26:58] 2025-06-03 18:30:55,285 | INFO     | extracted standard info from prmon json
[2025-06-03 21:26:58] 2025-06-03 18:30:55,285 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 21:26:58] 2025-06-03 18:30:55,285 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 21:26:58] 2025-06-03 18:30:55,286 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 21:26:58] 2025-06-03 18:30:55,286 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 21:26:58] 2025-06-03 18:30:55,290 | INFO     | fitting pss+swap vs Time
[2025-06-03 21:26:58] 2025-06-03 18:30:55,290 | INFO     | sum of square deviations: 2518000700.0
[2025-06-03 21:26:58] 2025-06-03 18:30:55,292 | INFO     | sum of deviations: 15517892052.999998
[2025-06-03 21:26:58] 2025-06-03 18:30:55,292 | INFO     | mean x: 1748969225.0
[2025-06-03 21:26:58] 2025-06-03 18:30:55,292 | INFO     | mean y: 2461522.273631841
[2025-06-03 21:26:58] 2025-06-03 18:30:55,292 | INFO     | -- intersect: -10776056385.83063
[2025-06-03 21:26:58] 2025-06-03 18:30:55,292 | INFO     | intersect: -10776056385.83063
[2025-06-03 21:26:58] 2025-06-03 18:30:55,293 | INFO     | chi2: 2.24793364385484
[2025-06-03 21:26:58] 2025-06-03 18:30:55,293 | INFO     | sum of square deviations: 2334722845.0
[2025-06-03 21:26:58] 2025-06-03 18:30:55,295 | INFO     | sum of deviations: 28158760677.5
[2025-06-03 21:26:58] 2025-06-03 18:30:55,295 | INFO     | mean x: 1748969072.5
[2025-06-03 21:26:58] 2025-06-03 18:30:55,295 | INFO     | mean y: 2471818.31122449
[2025-06-03 21:26:58] 2025-06-03 18:30:55,295 | INFO     | -- intersect: -21091595792.474773
[2025-06-03 21:26:58] 2025-06-03 18:30:55,295 | INFO     | intersect: -21091595792.474773
[2025-06-03 21:26:58] 2025-06-03 18:30:55,295 | INFO     | chi2: 1.4765081741036006
[2025-06-03 21:26:58] 2025-06-03 18:30:55,295 | INFO     | current chi2=1.4765081741036006 (change=34.317092582340216 %)
[2025-06-03 21:26:58] 2025-06-03 18:30:55,296 | INFO     | sum of square deviations: 2160561440.0
[2025-06-03 21:26:58] 2025-06-03 18:30:55,297 | INFO     | sum of deviations: 27343704938.000004
[2025-06-03 21:26:58] 2025-06-03 18:30:55,297 | INFO     | mean x: 1748968920.0
[2025-06-03 21:26:58] 2025-06-03 18:30:55,297 | INFO     | mean y: 2471104.502617801
[2025-06-03 21:26:58] 2025-06-03 18:30:55,304 | INFO     | -- intersect: -22132187604.491344
[2025-06-03 21:26:58] 2025-06-03 18:30:55,304 | INFO     | intersect: -22132187604.491344
[2025-06-03 21:26:58] 2025-06-03 18:30:55,305 | INFO     | chi2: 1.477475851597498
[2025-06-03 21:26:58] 2025-06-03 18:30:55,305 | INFO     | current chi2=1.477475851597498 (change=-0.06553824156678659 %)
[2025-06-03 21:26:58] 2025-06-03 18:30:55,305 | INFO     | right removable region: 190
[2025-06-03 21:26:58] 2025-06-03 18:30:55,305 | INFO     | sum of square deviations: 2334722845.0
[2025-06-03 21:26:58] 2025-06-03 18:30:55,306 | INFO     | sum of deviations: -14212467134.5
[2025-06-03 21:26:58] 2025-06-03 18:30:55,307 | INFO     | mean x: 1748969377.5
[2025-06-03 21:26:58] 2025-06-03 18:30:55,307 | INFO     | mean y: 2485975.9336734693
[2025-06-03 21:26:58] 2025-06-03 18:30:55,307 | INFO     | -- intersect: 10649218563.572218
[2025-06-03 21:26:58] 2025-06-03 18:30:55,307 | INFO     | intersect: 10649218563.572218
[2025-06-03 21:26:58] 2025-06-03 18:30:55,307 | INFO     | chi2: 0.8438212889784019
[2025-06-03 21:26:58] 2025-06-03 18:30:55,307 | INFO     | current chi2=0.8438212889784019 (change=62.46235776197621 %)
[2025-06-03 21:26:58] 2025-06-03 18:30:55,308 | INFO     | sum of square deviations: 2160561440.0
[2025-06-03 21:26:58] 2025-06-03 18:30:55,309 | INFO     | sum of deviations: -11456122202.0
[2025-06-03 21:26:58] 2025-06-03 18:30:55,309 | INFO     | mean x: 1748969530.0
[2025-06-03 21:26:58] 2025-06-03 18:30:55,309 | INFO     | mean y: 2483516.120418848
[2025-06-03 21:26:58] 2025-06-03 18:30:55,309 | INFO     | -- intersect: 9276188161.73073
[2025-06-03 21:26:58] 2025-06-03 18:30:55,309 | INFO     | intersect: 9276188161.73073
[2025-06-03 21:26:58] 2025-06-03 18:30:55,310 | INFO     | chi2: 0.8252725027768415
[2025-06-03 21:26:58] 2025-06-03 18:30:55,310 | INFO     | current chi2=0.8252725027768415 (change=2.19818893453341 %)
[2025-06-03 21:26:58] 2025-06-03 18:30:55,310 | INFO     | left removable region: 20
[2025-06-03 21:26:58] 2025-06-03 18:30:55,310 | INFO     | sum of square deviations: 1523386702.5
[2025-06-03 21:26:58] 2025-06-03 18:30:55,311 | INFO     | sum of deviations: 3776800329.5
[2025-06-03 21:26:58] 2025-06-03 18:30:55,311 | INFO     | mean x: 1748969499.5
[2025-06-03 21:26:58] 2025-06-03 18:30:55,312 | INFO     | mean y: 2492102.064705882
[2025-06-03 21:26:58] 2025-06-03 18:30:55,312 | INFO     | -- intersect: -4333576061.820984
[2025-06-03 21:26:58] 2025-06-03 18:30:55,312 | INFO     | intersect: -4333576061.820984
[2025-06-03 21:26:58] 2025-06-03 18:30:55,312 | INFO     | chi2: 0.0007596106348002001
[2025-06-03 21:26:58] 2025-06-03 18:30:55,312 | INFO     | -- intersect: -4333576061.820984
[2025-06-03 21:26:58] 2025-06-03 18:30:55,312 | INFO     | current memory leak: 2.48 B/s (using 170 data points, chi2=0.00)
[2025-06-03 21:26:58] 2025-06-03 18:30:55,313 | INFO     | ..............................
[2025-06-03 21:26:58] 2025-06-03 18:30:55,313 | INFO     | . Timing measurements:
[2025-06-03 21:26:58] 2025-06-03 18:30:55,313 | INFO     | . get job = 0 s
[2025-06-03 21:26:58] 2025-06-03 18:30:55,314 | INFO     | . initial setup = 2 s
[2025-06-03 21:26:58] 2025-06-03 18:30:55,314 | INFO     | . payload setup = 100 s
[2025-06-03 21:26:58] 2025-06-03 18:30:55,314 | INFO     | . stage-in = 0 s
[2025-06-03 21:26:58] 2025-06-03 18:30:55,314 | INFO     | . payload execution = 12304 s
[2025-06-03 21:26:58] 2025-06-03 18:30:55,314 | INFO     | . stage-out = 3 s
[2025-06-03 21:26:58] 2025-06-03 18:30:55,314 | INFO     | . log creation = 1 s
[2025-06-03 21:26:58] 2025-06-03 18:30:55,314 | INFO     | ..............................
[2025-06-03 21:26:58] 2025-06-03 18:30:55,428 | INFO     | 
[2025-06-03 21:26:58] 2025-06-03 18:30:55,429 | INFO     | job summary report
[2025-06-03 21:26:58] 2025-06-03 18:30:55,429 | INFO     | --------------------------------------------------
[2025-06-03 21:26:58] 2025-06-03 18:30:55,429 | INFO     | PanDA job id: 6677443433
[2025-06-03 21:26:58] 2025-06-03 18:30:55,429 | INFO     | task id: 45006595
[2025-06-03 21:26:58] 2025-06-03 18:30:55,429 | INFO     | errors: (none)
[2025-06-03 21:26:58] 2025-06-03 18:30:55,429 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 21:26:58] 2025-06-03 18:30:55,429 | INFO     | pilot state: finished 
[2025-06-03 21:26:58] 2025-06-03 18:30:55,429 | INFO     | transexitcode: 0
[2025-06-03 21:26:58] 2025-06-03 18:30:55,429 | INFO     | exeerrorcode: 0
[2025-06-03 21:26:58] 2025-06-03 18:30:55,429 | INFO     | exeerrordiag: 
[2025-06-03 21:26:58] 2025-06-03 18:30:55,430 | INFO     | exitcode: 0
[2025-06-03 21:26:58] 2025-06-03 18:30:55,430 | INFO     | exitmsg: OK
[2025-06-03 21:26:58] 2025-06-03 18:30:55,430 | INFO     | cpuconsumptiontime: 45715 s
[2025-06-03 21:26:58] 2025-06-03 18:30:55,430 | INFO     | nevents: 400
[2025-06-03 21:26:58] 2025-06-03 18:30:55,430 | INFO     | neventsw: 0
[2025-06-03 21:26:58] 2025-06-03 18:30:55,430 | INFO     | pid: 7905
[2025-06-03 21:26:58] 2025-06-03 18:30:55,430 | INFO     | pgrp: 7905
[2025-06-03 21:26:58] 2025-06-03 18:30:55,430 | INFO     | corecount: 8
[2025-06-03 21:26:58] 2025-06-03 18:30:55,430 | INFO     | event service: False
[2025-06-03 21:26:58] 2025-06-03 18:30:55,430 | INFO     | sizes: {0: 2404354, 1: 2405211, 2: 2405211, 12: 2405239, 23: 2405267, 34: 2405295, 44: 2405451, 55: 2405479, 66: 2405507, 77: 2405535, 87: 2405591, 90: 2406105, 98
[2025-06-03 21:26:58] 2025-06-03 18:30:55,430 | INFO     | --------------------------------------------------
[2025-06-03 21:26:58] 2025-06-03 18:30:55,431 | INFO     | 
[2025-06-03 21:26:58] 2025-06-03 18:30:55,431 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2025-06-03 21:26:58] 2025-06-03 18:30:55,914 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 21:26:58] 2025-06-03 18:30:55,915 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 21:26:58] 2025-06-03 18:30:55,915 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 21:26:58] 2025-06-03 18:30:55,915 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 21:26:58] 2025-06-03 18:30:55,915 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 21:26:58] 2025-06-03 18:30:55,915 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 21:26:58] 2025-06-03 18:30:55,915 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 21:26:58] 2025-06-03 18:30:55,915 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 21:26:58] 2025-06-03 18:30:55,915 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 21:26:58] 2025-06-03 18:30:55,915 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 21:26:58] 2025-06-03 18:30:55,915 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 21:26:58] 2025-06-03 18:30:55,915 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 21:26:58] 2025-06-03 18:30:55,916 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 21:26:58] 2025-06-03 18:30:55,916 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 21:26:58] 2025-06-03 18:30:55,916 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 21:26:58] 2025-06-03 18:30:55,916 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 21:26:58] 2025-06-03 18:30:55,916 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 21:26:58] 2025-06-03 18:30:55,916 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 21:26:58] 2025-06-03 18:30:55,916 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 21:26:58] 2025-06-03 18:30:55,916 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 21:26:58] 2025-06-03 18:30:55,917 | INFO     | job 6677443433 has completed (purged errors)
[2025-06-03 21:26:58] 2025-06-03 18:30:55,917 | INFO     | overall cleanup function is called
[2025-06-03 21:26:58] 2025-06-03 18:30:56,926 | INFO     | --- collectZombieJob: --- 10, [7905]
[2025-06-03 21:26:58] 2025-06-03 18:30:56,926 | INFO     | zombie collector waiting for pid 7905
[2025-06-03 21:26:58] 2025-06-03 18:30:56,926 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 21:26:58] 2025-06-03 18:30:56,926 | INFO     | collected zombie processes
[2025-06-03 21:26:58] 2025-06-03 18:30:56,926 | INFO     | will attempt to kill all subprocesses of pid=7905
[2025-06-03 21:26:58] 2025-06-03 18:30:57,059 | INFO     | process IDs to be killed: [7905] (in reverse order)
[2025-06-03 21:26:58] 2025-06-03 18:30:58,092 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 21:26:58] 2025-06-03 18:30:58,093 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 21:26:58] 2025-06-03 18:30:58,096 | INFO     | did not find any defunct processes belonging to 7905
[2025-06-03 21:26:58] 2025-06-03 18:30:58,099 | INFO     | did not find any defunct processes belonging to 7905
[2025-06-03 21:26:58] 2025-06-03 18:30:58,099 | INFO     | ready for new job
[2025-06-03 21:26:58] 2025-06-03 18:30:58,099 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 21:26:58] 2025-06-03 18:30:58,101 | INFO     | **************************************
[2025-06-03 21:26:58] 2025-06-03 18:30:58,101 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 21:26:58] 2025-06-03 18:30:58,101 | INFO     | **************************************
[2025-06-03 21:26:58] 2025-06-03 18:30:58,101 | INFO     | 
[2025-06-03 21:26:58] 2025-06-03 18:30:58,102 | INFO     | pilot is running in a VM
[2025-06-03 21:26:58] 2025-06-03 18:30:58,102 | INFO     | architecture information:
[2025-06-03 21:26:58] 2025-06-03 18:30:58,108 | INFO     | executing command: cat /etc/os-release
[2025-06-03 21:26:58] 2025-06-03 18:30:58,351 | INFO     | cat /etc/os-release:
[2025-06-03 21:26:58] NAME="CentOS Linux"
[2025-06-03 21:26:58] VERSION="7 (Core)"
[2025-06-03 21:26:58] ID="centos"
[2025-06-03 21:26:58] ID_LIKE="rhel fedora"
[2025-06-03 21:26:58] VERSION_ID="7"
[2025-06-03 21:26:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 21:26:58] ANSI_COLOR="0;31"
[2025-06-03 21:26:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 21:26:58] HOME_URL="https://www.centos.org/"
[2025-06-03 21:26:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 21:26:58] 
[2025-06-03 21:26:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 21:26:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 21:26:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 21:26:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 21:26:58] 
[2025-06-03 21:26:58] 2025-06-03 18:30:58,351 | INFO     | **************************************
[2025-06-03 21:26:58] 2025-06-03 18:30:58,855 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2025-06-03 21:26:58] 2025-06-03 18:30:59,055 | INFO     | sufficient remaining disk space (496964206592 B)
[2025-06-03 21:26:58] 2025-06-03 18:30:59,056 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 21:26:58] 2025-06-03 18:30:59,056 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 21:26:58] 2025-06-03 18:30:59,056 | INFO     | update_server=False
[2025-06-03 21:26:58] 2025-06-03 18:30:59,056 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 21:26:58] 2025-06-03 18:30:59,062 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 21:26:58] 2025-06-03 18:30:59,062 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 21:26:58] 2025-06-03 18:30:59,062 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 21:26:58] 2025-06-03 18:30:59,062 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 21:26:58] 2025-06-03 18:30:59,063 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 21:26:58] 2025-06-03 18:30:59,063 | INFO     | aborting loop
[2025-06-03 21:26:58] 2025-06-03 18:30:59,063 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 21:26:58] 2025-06-03 18:30:59,156 | INFO     | all data control threads have been joined
[2025-06-03 21:26:58] 2025-06-03 18:30:59,444 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 21:26:58] 2025-06-03 18:30:59,514 | INFO     | all payload control threads have been joined
[2025-06-03 21:26:58] 2025-06-03 18:31:00,066 | INFO     | [job] retrieve thread has finished
[2025-06-03 21:26:58] 2025-06-03 18:31:00,068 | INFO     | [job] job monitor thread has finished
[2025-06-03 21:26:58] 2025-06-03 18:31:00,134 | INFO     | all job control threads have been joined
[2025-06-03 21:26:58] 2025-06-03 18:31:00,163 | INFO     | [data] control thread has finished
[2025-06-03 21:26:58] 2025-06-03 18:31:00,330 | INFO     | [payload] validate_post thread has finished
[2025-06-03 21:26:58] 2025-06-03 18:31:00,415 | INFO     | [job] validate thread has finished
[2025-06-03 21:26:58] 2025-06-03 18:31:00,444 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 21:26:58] 2025-06-03 18:31:00,520 | INFO     | [payload] control thread has finished
[2025-06-03 21:26:58] 2025-06-03 18:31:00,750 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 21:26:58] 2025-06-03 18:31:01,139 | INFO     | [job] control thread has finished
[2025-06-03 21:26:58] 2025-06-03 18:31:01,173 | INFO     | [payload] failed_post thread has finished
[2025-06-03 21:26:58] 2025-06-03 18:31:01,217 | INFO     | [data] copytool_in thread has finished
[2025-06-03 21:26:58] 2025-06-03 18:31:01,262 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 21:26:58] 2025-06-03 18:31:01,336 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 21:26:58] 2025-06-03 18:31:01,441 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 21:26:58] 2025-06-03 18:31:01,450 | INFO     | [job] queue monitor thread has finished
[2025-06-03 21:26:58] 2025-06-03 18:31:01,454 | INFO     | [data] copytool_out thread has finished
[2025-06-03 21:26:58] 2025-06-03 18:31:03,072 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 21:26:58] 2025-06-03 18:31:05,162 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140625488713536)>', '<ExcThread(monitor, started 140624544134912)>']
[2025-06-03 21:26:58] 2025-06-03 18:31:06,104 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 21:26:58] 2025-06-03 18:31:06,104 | INFO     | [monitor] control thread has ended
[2025-06-03 21:26:58] 2025-06-03 18:31:10,188 | INFO     | all workflow threads have been joined
[2025-06-03 21:26:58] 2025-06-03 18:31:10,188 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 21:26:58] 2025-06-03 18:31:10,188 | INFO     | traces error code: 0
[2025-06-03 21:26:58] 2025-06-03 18:31:10,189 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 21:26:58] 2025-06-03 18:31:10,526 [wrapper] ==== pilot stdout END ====
[2025-06-03 21:26:58] 2025-06-03 18:31:10,617 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 21:26:58] 2025-06-03 18:31:10,708 [wrapper] pilotpid: 28320
[2025-06-03 21:26:58] 2025-06-03 18:31:10,792 [wrapper] Pilot exit status: 0
[2025-06-03 21:26:58] 2025-06-03 18:31:11,297 [wrapper] pandaids: 6677443433
[2025-06-03 21:26:58] 2025-06-03 18:31:11,809 [wrapper] cleanup supervisor_pilot 25996 28321
[2025-06-03 21:26:58] 2025-06-03 18:31:11,918 [wrapper] Test setup, not cleaning
[2025-06-03 21:26:58] 2025-06-03 18:31:12,009 [wrapper] apfmon messages muted
[2025-06-03 21:26:58] 2025-06-03 18:31:12,093 [wrapper] ==== wrapper stdout END ====
[2025-06-03 21:26:58] 2025-06-03 18:31:12,178 [wrapper] ==== wrapper stderr END ====
[2025-06-03 21:26:58]  *** Error codes and diagnostics ***
[2025-06-03 21:26:58]     "exeErrorCode": 0,
[2025-06-03 21:26:58]     "exeErrorDiag": "",
[2025-06-03 21:26:58]     "pilotErrorCode": 0,
[2025-06-03 21:26:58]     "pilotErrorDiag": "",
[2025-06-03 21:26:58]  *** Listing of results directory ***
[2025-06-03 21:26:58] total 393508
[2025-06-03 21:26:58] -rw-r--r--. 1 boinc boinc    495897 Jun  3 03:51 pilot3.tar.gz
[2025-06-03 21:26:58] -rw-r--r--. 1 boinc boinc      5111 Jun  3 04:11 queuedata.json
[2025-06-03 21:26:58] -rwx------. 1 boinc boinc     37140 Jun  3 04:13 runpilot2-wrapper.sh
[2025-06-03 21:26:58] -rw-r--r--. 1 boinc boinc       100 Jun  3 16:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 21:26:58] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 16:54 run_atlas
[2025-06-03 21:26:58] -rw-r--r--. 1 boinc boinc       105 Jun  3 16:54 job.xml
[2025-06-03 21:26:58] -rw-r--r--. 2 boinc boinc 217050690 Jun  3 16:54 EVNT.45006593._000678.pool.root.1
[2025-06-03 21:26:58] drwxrwx--x. 2 boinc boinc        68 Jun  3 16:54 shared
[2025-06-03 21:26:58] -rw-r--r--. 2 boinc boinc    508880 Jun  3 16:54 input.tar.gz
[2025-06-03 21:26:58] -rw-r--r--. 1 boinc boinc      6393 Jun  3 16:54 init_data.xml
[2025-06-03 21:26:58] -rw-r--r--. 2 boinc boinc     15093 Jun  3 16:54 start_atlas.sh
[2025-06-03 21:26:58] -rw-r--r--. 1 boinc boinc         0 Jun  3 16:54 boinc_lockfile
[2025-06-03 21:26:58] -rw-r--r--. 1 boinc boinc      2524 Jun  3 16:56 pandaJob.out
[2025-06-03 21:26:58] -rw-------. 1 boinc boinc    982724 Jun  3 16:59 agis_schedconf.cvmfs.json
[2025-06-03 21:26:58] drwx------. 4 boinc boinc      4096 Jun  3 16:59 pilot3
[2025-06-03 21:26:58] -rw-------. 1 boinc boinc 179141151 Jun  3 20:27 HITS.45006595._016941.pool.root.1
[2025-06-03 21:26:58] -rw-r--r--. 1 boinc boinc       531 Jun  3 20:28 boinc_task_state.xml
[2025-06-03 21:26:58] -rw-------. 1 boinc boinc      1017 Jun  3 20:29 memory_monitor_summary.json
[2025-06-03 21:26:58] -rw-------. 1 boinc boinc   1603667 Jun  3 20:29 agis_ddmendpoints.agis.ALL.json
[2025-06-03 21:26:58] -rw-------. 1 boinc boinc    372301 Jun  3 20:29 log.45006595._016941.job.log.tgz.1
[2025-06-03 21:26:58] -rw-------. 1 boinc boinc        95 Jun  3 20:30 pilot_heartbeat.json
[2025-06-03 21:26:58] -rw-------. 1 boinc boinc      7685 Jun  3 20:30 heartbeat.json
[2025-06-03 21:26:58] -rw-------. 1 boinc boinc      4540 Jun  3 20:31 pilotlog.txt
[2025-06-03 21:26:58] -rw-------. 1 boinc boinc   1099075 Jun  3 20:31 log.45006595._016941.job.log.1
[2025-06-03 21:26:58] -rw-------. 1 boinc boinc       357 Jun  3 20:31 output.list
[2025-06-03 21:26:58] -rw-r--r--. 1 boinc boinc       620 Jun  3 20:31 runtime_log
[2025-06-03 21:26:58] -rw-------. 1 boinc boinc   1495040 Jun  3 20:31 result.tar.gz
[2025-06-03 21:26:58] -rw-r--r--. 1 boinc boinc      8673 Jun  3 20:31 runtime_log.err
[2025-06-03 21:26:58] -rw-------. 1 boinc boinc       656 Jun  3 20:31 KVvKDmUKWg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmeUhKDmlJY22n.diag
[2025-06-03 21:26:58] -rw-r--r--. 1 boinc boinc      8192 Jun  3 21:26 boinc_mmap_file
[2025-06-03 21:26:58] -rw-r--r--. 1 boinc boinc        28 Jun  3 21:26 wrapper_checkpoint.txt
[2025-06-03 21:26:58] -rw-r--r--. 1 boinc boinc     20499 Jun  3 21:26 stderr.txt
[2025-06-03 21:26:58] HITS file was successfully produced:
[2025-06-03 21:26:58] -rw-------. 1 boinc boinc 179141151 Jun  3 20:27 shared/HITS.pool.root.1
[2025-06-03 21:26:58]  *** Contents of shared directory: ***
[2025-06-03 21:26:58] total 388884
[2025-06-03 21:26:58] -rw-r--r--. 2 boinc boinc 217050690 Jun  3 16:54 ATLAS.root_0
[2025-06-03 21:26:58] -rw-r--r--. 2 boinc boinc    508880 Jun  3 16:54 input.tar.gz
[2025-06-03 21:26:58] -rw-r--r--. 2 boinc boinc     15093 Jun  3 16:54 start_atlas.sh
[2025-06-03 21:26:58] -rw-------. 1 boinc boinc 179141151 Jun  3 20:27 HITS.pool.root.1
[2025-06-03 21:26:58] -rw-------. 1 boinc boinc   1495040 Jun  3 20:31 result.tar.gz
21:27:00 (21944): run_atlas exited; CPU time 45877.209179
21:27:00 (21944): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN