Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:48:52 (6666): wrapper (7.7.26015): starting
14:48:52 (6666): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 14:48:52] Arguments: --nthreads 8
[2025-06-03 14:48:52] Threads: 8
[2025-06-03 14:48:52] Checking for CVMFS
[2025-06-03 14:48:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 14:48:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 14:48:53] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 14:48:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 14:48:54] 2.11.2.0 16647 31955 99344 146741 2 146 15974108 25165825 4114 130560 0 16805400 99.743 20168732 5029 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 14:48:54] CVMFS is ok
[2025-06-03 14:48:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 14:48:54] Checking for apptainer binary...
[2025-06-03 14:48:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 14:48:54] Running /usr/bin/apptainer --version
[2025-06-03 14:48:54] apptainer version 1.3.2-1.el7
[2025-06-03 14:48:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 14:50:17] cg-vwn490.simple-grid.lan
[2025-06-03 14:50:17] apptainer works
[2025-06-03 14:50:17] Set ATHENA_PROC_NUMBER=8
[2025-06-03 14:50:17] Set ATHENA_CORE_NUMBER=8
[2025-06-03 14:50:17] Starting ATLAS job with PandaID=6677442253
[2025-06-03 14:50:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 18:40:35]  *** The last 200 lines of the pilot log: ***
[2025-06-03 18:40:35] 2025-06-03 16:28:59,546 | INFO     | extracted standard info from prmon json
[2025-06-03 18:40:35] 2025-06-03 16:28:59,546 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 18:40:35] 2025-06-03 16:28:59,546 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 18:40:35] 2025-06-03 16:28:59,546 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 18:40:35] 2025-06-03 16:28:59,546 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 18:40:35] 2025-06-03 16:28:59,551 | INFO     | fitting pss+swap vs Time
[2025-06-03 18:40:35] 2025-06-03 16:28:59,551 | INFO     | sum of square deviations: 2671343110.0
[2025-06-03 18:40:35] 2025-06-03 16:28:59,553 | INFO     | sum of deviations: 60324291104.99998
[2025-06-03 18:40:35] 2025-06-03 16:28:59,553 | INFO     | mean x: 1748961888.0
[2025-06-03 18:40:35] 2025-06-03 16:28:59,553 | INFO     | mean y: 2425534.9219512194
[2025-06-03 18:40:35] 2025-06-03 16:28:59,553 | INFO     | -- intersect: -39492645565.57115
[2025-06-03 18:40:35] 2025-06-03 16:28:59,553 | INFO     | intersect: -39492645565.57115
[2025-06-03 18:40:35] 2025-06-03 16:28:59,554 | INFO     | chi2: 6.024538622924802
[2025-06-03 18:40:35] 2025-06-03 16:28:59,554 | INFO     | sum of square deviations: 2480604650.0
[2025-06-03 18:40:35] 2025-06-03 16:28:59,566 | INFO     | sum of deviations: 72184423535.5
[2025-06-03 18:40:35] 2025-06-03 16:28:59,567 | INFO     | mean x: 1748961735.5
[2025-06-03 18:40:35] 2025-06-03 16:28:59,567 | INFO     | mean y: 2434803.825
[2025-06-03 18:40:35] 2025-06-03 16:28:59,567 | INFO     | -- intersect: -50891525530.690674
[2025-06-03 18:40:35] 2025-06-03 16:28:59,567 | INFO     | intersect: -50891525530.690674
[2025-06-03 18:40:35] 2025-06-03 16:28:59,567 | INFO     | chi2: 5.309930955033011
[2025-06-03 18:40:35] 2025-06-03 16:28:59,568 | INFO     | current chi2=5.309930955033011 (change=11.86161650906409 %)
[2025-06-03 18:40:35] 2025-06-03 16:28:59,568 | INFO     | right removable region: 199
[2025-06-03 18:40:35] 2025-06-03 16:28:59,568 | INFO     | sum of square deviations: 2480604650.0
[2025-06-03 18:40:35] 2025-06-03 16:28:59,569 | INFO     | sum of deviations: -7912715893.999998
[2025-06-03 18:40:35] 2025-06-03 16:28:59,570 | INFO     | mean x: 1748962040.5
[2025-06-03 18:40:35] 2025-06-03 16:28:59,570 | INFO     | mean y: 2480028.87
[2025-06-03 18:40:35] 2025-06-03 16:28:59,570 | INFO     | -- intersect: 5581377793.117526
[2025-06-03 18:40:35] 2025-06-03 16:28:59,570 | INFO     | intersect: 5581377793.117526
[2025-06-03 18:40:35] 2025-06-03 16:28:59,570 | INFO     | chi2: 1.5424695665387316
[2025-06-03 18:40:35] 2025-06-03 16:28:59,571 | INFO     | current chi2=1.5424695665387316 (change=74.39688475613272 %)
[2025-06-03 18:40:35] 2025-06-03 16:28:59,571 | INFO     | sum of square deviations: 2299168690.0
[2025-06-03 18:40:35] 2025-06-03 16:28:59,572 | INFO     | sum of deviations: -29072455125.000004
[2025-06-03 18:40:35] 2025-06-03 16:28:59,572 | INFO     | mean x: 1748962193.0
[2025-06-03 18:40:35] 2025-06-03 16:28:59,572 | INFO     | mean y: 2497636.3846153845
[2025-06-03 18:40:35] 2025-06-03 16:28:59,573 | INFO     | -- intersect: 22117719147.736225
[2025-06-03 18:40:35] 2025-06-03 16:28:59,573 | INFO     | intersect: 22117719147.736225
[2025-06-03 18:40:35] 2025-06-03 16:28:59,573 | INFO     | chi2: 0.9084667367799995
[2025-06-03 18:40:35] 2025-06-03 16:28:59,573 | INFO     | current chi2=0.9084667367799995 (change=41.103101384452 %)
[2025-06-03 18:40:35] 2025-06-03 16:28:59,573 | INFO     | sum of square deviations: 2126802667.5
[2025-06-03 18:40:35] 2025-06-03 16:28:59,575 | INFO     | sum of deviations: -24599841490.000008
[2025-06-03 18:40:35] 2025-06-03 16:28:59,575 | INFO     | mean x: 1748962345.5
[2025-06-03 18:40:35] 2025-06-03 16:28:59,575 | INFO     | mean y: 2493643.9368421054
[2025-06-03 18:40:35] 2025-06-03 16:28:59,575 | INFO     | -- intersect: 20232013349.14411
[2025-06-03 18:40:35] 2025-06-03 16:28:59,575 | INFO     | intersect: 20232013349.14411
[2025-06-03 18:40:35] 2025-06-03 16:28:59,576 | INFO     | chi2: 0.8907225966907677
[2025-06-03 18:40:35] 2025-06-03 16:28:59,576 | INFO     | current chi2=0.8907225966907677 (change=1.9531964540743327 %)
[2025-06-03 18:40:35] 2025-06-03 16:28:59,576 | INFO     | left removable region: 30
[2025-06-03 18:40:35] 2025-06-03 16:28:59,576 | INFO     | sum of square deviations: 1496660620.0
[2025-06-03 18:40:35] 2025-06-03 16:28:59,577 | INFO     | sum of deviations: 2757359149.0
[2025-06-03 18:40:35] 2025-06-03 16:28:59,577 | INFO     | mean x: 1748962620.0
[2025-06-03 18:40:35] 2025-06-03 16:28:59,577 | INFO     | mean y: 2490835.4674556213
[2025-06-03 18:40:35] 2025-06-03 16:28:59,578 | INFO     | -- intersect: -3219694619.987376
[2025-06-03 18:40:35] 2025-06-03 16:28:59,578 | INFO     | intersect: -3219694619.987376
[2025-06-03 18:40:35] 2025-06-03 16:28:59,578 | INFO     | chi2: 0.00048146692512667384
[2025-06-03 18:40:35] 2025-06-03 16:28:59,578 | INFO     | -- intersect: -3219694619.987376
[2025-06-03 18:40:35] 2025-06-03 16:28:59,578 | INFO     | current memory leak: 1.84 B/s (using 169 data points, chi2=0.00)
[2025-06-03 18:40:35] 2025-06-03 16:28:59,579 | INFO     | ..............................
[2025-06-03 18:40:35] 2025-06-03 16:28:59,579 | INFO     | . Timing measurements:
[2025-06-03 18:40:35] 2025-06-03 16:28:59,579 | INFO     | . get job = 0 s
[2025-06-03 18:40:35] 2025-06-03 16:28:59,579 | INFO     | . initial setup = 9 s
[2025-06-03 18:40:35] 2025-06-03 16:28:59,579 | INFO     | . payload setup = 131 s
[2025-06-03 18:40:35] 2025-06-03 16:28:59,580 | INFO     | . stage-in = 0 s
[2025-06-03 18:40:35] 2025-06-03 16:28:59,580 | INFO     | . payload execution = 12606 s
[2025-06-03 18:40:35] 2025-06-03 16:28:59,580 | INFO     | . stage-out = 1 s
[2025-06-03 18:40:35] 2025-06-03 16:28:59,580 | INFO     | . log creation = 0 s
[2025-06-03 18:40:35] 2025-06-03 16:28:59,580 | INFO     | ..............................
[2025-06-03 18:40:35] 2025-06-03 16:28:59,699 | INFO     | 
[2025-06-03 18:40:35] 2025-06-03 16:28:59,700 | INFO     | job summary report
[2025-06-03 18:40:35] 2025-06-03 16:28:59,700 | INFO     | --------------------------------------------------
[2025-06-03 18:40:35] 2025-06-03 16:28:59,700 | INFO     | PanDA job id: 6677442253
[2025-06-03 18:40:35] 2025-06-03 16:28:59,700 | INFO     | task id: 45006595
[2025-06-03 18:40:35] 2025-06-03 16:28:59,700 | INFO     | errors: (none)
[2025-06-03 18:40:35] 2025-06-03 16:28:59,700 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 18:40:35] 2025-06-03 16:28:59,700 | INFO     | pilot state: finished 
[2025-06-03 18:40:35] 2025-06-03 16:28:59,700 | INFO     | transexitcode: 0
[2025-06-03 18:40:35] 2025-06-03 16:28:59,700 | INFO     | exeerrorcode: 0
[2025-06-03 18:40:35] 2025-06-03 16:28:59,700 | INFO     | exeerrordiag: 
[2025-06-03 18:40:35] 2025-06-03 16:28:59,700 | INFO     | exitcode: 0
[2025-06-03 18:40:35] 2025-06-03 16:28:59,700 | INFO     | exitmsg: OK
[2025-06-03 18:40:35] 2025-06-03 16:28:59,701 | INFO     | cpuconsumptiontime: 44893 s
[2025-06-03 18:40:35] 2025-06-03 16:28:59,701 | INFO     | nevents: 400
[2025-06-03 18:40:35] 2025-06-03 16:28:59,701 | INFO     | neventsw: 0
[2025-06-03 18:40:35] 2025-06-03 16:28:59,701 | INFO     | pid: 23049
[2025-06-03 18:40:35] 2025-06-03 16:28:59,701 | INFO     | pgrp: 23049
[2025-06-03 18:40:35] 2025-06-03 16:28:59,701 | INFO     | corecount: 8
[2025-06-03 18:40:35] 2025-06-03 16:28:59,701 | INFO     | event service: False
[2025-06-03 18:40:35] 2025-06-03 16:28:59,701 | INFO     | sizes: {0: 2404354, 1: 2405039, 2: 2405238, 13: 2405238, 23: 2405294, 34: 2405322, 45: 2405478, 56: 2405506, 66: 2405534, 77: 2405562, 88: 2405618, 90: 2406132, 98
[2025-06-03 18:40:35] 2025-06-03 16:28:59,701 | INFO     | --------------------------------------------------
[2025-06-03 18:40:35] 2025-06-03 16:28:59,701 | INFO     | 
[2025-06-03 18:40:35] 2025-06-03 16:28:59,701 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-03 18:40:35] 2025-06-03 16:28:59,732 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 18:40:35] 2025-06-03 16:28:59,732 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 18:40:35] 2025-06-03 16:28:59,732 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 18:40:35] 2025-06-03 16:28:59,733 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 18:40:35] 2025-06-03 16:28:59,733 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 18:40:35] 2025-06-03 16:28:59,733 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 18:40:35] 2025-06-03 16:28:59,733 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 18:40:35] 2025-06-03 16:28:59,733 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 18:40:35] 2025-06-03 16:28:59,733 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 18:40:35] 2025-06-03 16:28:59,733 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 18:40:35] 2025-06-03 16:28:59,733 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 18:40:35] 2025-06-03 16:28:59,733 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 18:40:35] 2025-06-03 16:28:59,733 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 18:40:35] 2025-06-03 16:28:59,733 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 18:40:35] 2025-06-03 16:28:59,733 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 18:40:35] 2025-06-03 16:28:59,734 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 18:40:35] 2025-06-03 16:28:59,734 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 18:40:35] 2025-06-03 16:28:59,734 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 18:40:35] 2025-06-03 16:28:59,734 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 18:40:35] 2025-06-03 16:28:59,734 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 18:40:35] 2025-06-03 16:28:59,734 | INFO     | job 6677442253 has completed (purged errors)
[2025-06-03 18:40:35] 2025-06-03 16:28:59,734 | INFO     | overall cleanup function is called
[2025-06-03 18:40:35] 2025-06-03 16:29:00,742 | INFO     | --- collectZombieJob: --- 10, [23049]
[2025-06-03 18:40:35] 2025-06-03 16:29:00,743 | INFO     | zombie collector waiting for pid 23049
[2025-06-03 18:40:35] 2025-06-03 16:29:00,743 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 18:40:35] 2025-06-03 16:29:00,743 | INFO     | collected zombie processes
[2025-06-03 18:40:35] 2025-06-03 16:29:00,743 | INFO     | will attempt to kill all subprocesses of pid=23049
[2025-06-03 18:40:35] 2025-06-03 16:29:00,840 | INFO     | process IDs to be killed: [23049] (in reverse order)
[2025-06-03 18:40:35] 2025-06-03 16:29:01,038 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 18:40:35] 2025-06-03 16:29:01,038 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 18:40:35] 2025-06-03 16:29:01,041 | INFO     | did not find any defunct processes belonging to 23049
[2025-06-03 18:40:35] 2025-06-03 16:29:01,044 | INFO     | did not find any defunct processes belonging to 23049
[2025-06-03 18:40:35] 2025-06-03 16:29:01,044 | INFO     | ready for new job
[2025-06-03 18:40:35] 2025-06-03 16:29:01,044 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 18:40:35] 2025-06-03 16:29:01,046 | INFO     | **************************************
[2025-06-03 18:40:35] 2025-06-03 16:29:01,046 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 18:40:35] 2025-06-03 16:29:01,046 | INFO     | **************************************
[2025-06-03 18:40:35] 2025-06-03 16:29:01,046 | INFO     | 
[2025-06-03 18:40:35] 2025-06-03 16:29:01,047 | INFO     | pilot is running in a VM
[2025-06-03 18:40:35] 2025-06-03 16:29:01,047 | INFO     | architecture information:
[2025-06-03 18:40:35] 2025-06-03 16:29:01,047 | INFO     | executing command: cat /etc/os-release
[2025-06-03 18:40:35] 2025-06-03 16:29:01,085 | INFO     | cat /etc/os-release:
[2025-06-03 18:40:35] NAME="CentOS Linux"
[2025-06-03 18:40:35] VERSION="7 (Core)"
[2025-06-03 18:40:35] ID="centos"
[2025-06-03 18:40:35] ID_LIKE="rhel fedora"
[2025-06-03 18:40:35] VERSION_ID="7"
[2025-06-03 18:40:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 18:40:35] ANSI_COLOR="0;31"
[2025-06-03 18:40:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 18:40:35] HOME_URL="https://www.centos.org/"
[2025-06-03 18:40:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 18:40:35] 
[2025-06-03 18:40:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 18:40:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 18:40:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 18:40:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 18:40:35] 
[2025-06-03 18:40:35] 2025-06-03 16:29:01,085 | INFO     | **************************************
[2025-06-03 18:40:35] 2025-06-03 16:29:01,588 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-03 18:40:35] 2025-06-03 16:29:01,654 | INFO     | sufficient remaining disk space (497252564992 B)
[2025-06-03 18:40:35] 2025-06-03 16:29:01,654 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 18:40:35] 2025-06-03 16:29:01,654 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 18:40:35] 2025-06-03 16:29:01,654 | INFO     | update_server=False
[2025-06-03 18:40:35] 2025-06-03 16:29:01,655 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 18:40:35] 2025-06-03 16:29:01,655 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 18:40:35] 2025-06-03 16:29:01,655 | INFO     | aborting loop
[2025-06-03 18:40:35] 2025-06-03 16:29:01,655 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 18:40:35] 2025-06-03 16:29:01,655 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 18:40:35] 2025-06-03 16:29:01,656 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 18:40:35] 2025-06-03 16:29:01,656 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 18:40:35] 2025-06-03 16:29:01,657 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 18:40:35] 2025-06-03 16:29:01,727 | INFO     | all data control threads have been joined
[2025-06-03 18:40:35] 2025-06-03 16:29:01,864 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 18:40:35] 2025-06-03 16:29:02,433 | INFO     | all payload control threads have been joined
[2025-06-03 18:40:35] 2025-06-03 16:29:02,660 | INFO     | [job] job monitor thread has finished
[2025-06-03 18:40:35] 2025-06-03 16:29:02,661 | INFO     | [job] retrieve thread has finished
[2025-06-03 18:40:35] 2025-06-03 16:29:02,662 | INFO     | [job] queue monitor thread has finished
[2025-06-03 18:40:35] 2025-06-03 16:29:02,732 | INFO     | [data] control thread has finished
[2025-06-03 18:40:35] 2025-06-03 16:29:03,068 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 18:40:35] 2025-06-03 16:29:03,275 | INFO     | [payload] failed_post thread has finished
[2025-06-03 18:40:35] 2025-06-03 16:29:03,299 | INFO     | all job control threads have been joined
[2025-06-03 18:40:35] 2025-06-03 16:29:03,304 | INFO     | [job] validate thread has finished
[2025-06-03 18:40:35] 2025-06-03 16:29:03,318 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 18:40:35] 2025-06-03 16:29:03,379 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 18:40:35] 2025-06-03 16:29:03,426 | INFO     | [data] copytool_in thread has finished
[2025-06-03 18:40:35] 2025-06-03 16:29:03,438 | INFO     | [payload] control thread has finished
[2025-06-03 18:40:35] 2025-06-03 16:29:04,010 | INFO     | [payload] validate_post thread has finished
[2025-06-03 18:40:35] 2025-06-03 16:29:04,080 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 18:40:35] 2025-06-03 16:29:04,090 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 18:40:35] 2025-06-03 16:29:04,307 | INFO     | [job] control thread has finished
[2025-06-03 18:40:35] 2025-06-03 16:29:05,074 | INFO     | [data] copytool_out thread has finished
[2025-06-03 18:40:35] 2025-06-03 16:29:05,874 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 18:40:35] 2025-06-03 16:29:06,117 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139900816451392)>', '<ExcThread(monitor, started 139900597946112)>']
[2025-06-03 18:40:35] 2025-06-03 16:29:06,681 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 18:40:35] 2025-06-03 16:29:06,681 | INFO     | [monitor] control thread has ended
[2025-06-03 18:40:35] 2025-06-03 16:29:11,143 | INFO     | all workflow threads have been joined
[2025-06-03 18:40:35] 2025-06-03 16:29:11,144 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 18:40:35] 2025-06-03 16:29:11,144 | INFO     | traces error code: 0
[2025-06-03 18:40:35] 2025-06-03 16:29:11,144 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 18:40:35] 2025-06-03 16:29:11,372 [wrapper] ==== pilot stdout END ====
[2025-06-03 18:40:35] 2025-06-03 16:29:11,400 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 18:40:35] 2025-06-03 16:29:11,420 [wrapper] pilotpid: 14396
[2025-06-03 18:40:35] 2025-06-03 16:29:11,488 [wrapper] Pilot exit status: 0
[2025-06-03 18:40:35] 2025-06-03 16:29:11,791 [wrapper] pandaids: 6677442253
[2025-06-03 18:40:35] 2025-06-03 16:29:12,459 [wrapper] cleanup supervisor_pilot 27394 14397
[2025-06-03 18:40:35] 2025-06-03 16:29:12,483 [wrapper] Test setup, not cleaning
[2025-06-03 18:40:35] 2025-06-03 16:29:12,499 [wrapper] apfmon messages muted
[2025-06-03 18:40:35] 2025-06-03 16:29:12,504 [wrapper] ==== wrapper stdout END ====
[2025-06-03 18:40:35] 2025-06-03 16:29:12,511 [wrapper] ==== wrapper stderr END ====
[2025-06-03 18:40:35]  *** Error codes and diagnostics ***
[2025-06-03 18:40:35]     "exeErrorCode": 0,
[2025-06-03 18:40:35]     "exeErrorDiag": "",
[2025-06-03 18:40:35]     "pilotErrorCode": 0,
[2025-06-03 18:40:35]     "pilotErrorDiag": "",
[2025-06-03 18:40:35]  *** Listing of results directory ***
[2025-06-03 18:40:35] total 389060
[2025-06-03 18:40:35] -rw-r--r--. 1 boinc boinc    495897 Jun  3 03:24 pilot3.tar.gz
[2025-06-03 18:40:35] -rw-r--r--. 1 boinc boinc      5111 Jun  3 03:30 queuedata.json
[2025-06-03 18:40:35] -rwx------. 1 boinc boinc     37140 Jun  3 03:30 runpilot2-wrapper.sh
[2025-06-03 18:40:35] -rw-r--r--. 1 boinc boinc       100 Jun  3 14:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 18:40:35] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 14:48 run_atlas
[2025-06-03 18:40:35] -rw-r--r--. 1 boinc boinc       105 Jun  3 14:48 job.xml
[2025-06-03 18:40:35] -rw-r--r--. 1 boinc boinc      6392 Jun  3 14:48 init_data.xml
[2025-06-03 18:40:35] -rw-r--r--. 2 boinc boinc 213895750 Jun  3 14:48 EVNT.45006593._000653.pool.root.1
[2025-06-03 18:40:35] -rw-r--r--. 2 boinc boinc     15093 Jun  3 14:48 start_atlas.sh
[2025-06-03 18:40:35] drwxrwx--x. 2 boinc boinc        68 Jun  3 14:48 shared
[2025-06-03 18:40:35] -rw-r--r--. 2 boinc boinc    508884 Jun  3 14:48 input.tar.gz
[2025-06-03 18:40:35] -rw-r--r--. 1 boinc boinc         0 Jun  3 14:48 boinc_lockfile
[2025-06-03 18:40:35] -rw-r--r--. 1 boinc boinc      2524 Jun  3 14:50 pandaJob.out
[2025-06-03 18:40:35] -rw-------. 1 boinc boinc    982666 Jun  3 14:53 agis_schedconf.cvmfs.json
[2025-06-03 18:40:35] drwx------. 4 boinc boinc      4096 Jun  3 14:53 pilot3
[2025-06-03 18:40:35] -rw-------. 1 boinc boinc 177729364 Jun  3 18:28 HITS.45006595._016308.pool.root.1
[2025-06-03 18:40:35] -rw-------. 1 boinc boinc        95 Jun  3 18:28 pilot_heartbeat.json
[2025-06-03 18:40:35] -rw-r--r--. 1 boinc boinc       531 Jun  3 18:28 boinc_task_state.xml
[2025-06-03 18:40:35] -rw-------. 1 boinc boinc      1019 Jun  3 18:28 memory_monitor_summary.json
[2025-06-03 18:40:35] -rw-------. 1 boinc boinc   1603667 Jun  3 18:28 agis_ddmendpoints.agis.ALL.json
[2025-06-03 18:40:35] -rw-------. 1 boinc boinc    365108 Jun  3 18:28 log.45006595._016308.job.log.tgz.1
[2025-06-03 18:40:35] -rw-------. 1 boinc boinc      7690 Jun  3 18:28 heartbeat.json
[2025-06-03 18:40:35] -rw-------. 1 boinc boinc      4539 Jun  3 18:29 pilotlog.txt
[2025-06-03 18:40:35] -rw-------. 1 boinc boinc   1115169 Jun  3 18:29 log.45006595._016308.job.log.1
[2025-06-03 18:40:35] -rw-------. 1 boinc boinc       357 Jun  3 18:29 output.list
[2025-06-03 18:40:35] -rw-r--r--. 1 boinc boinc       620 Jun  3 18:29 runtime_log
[2025-06-03 18:40:35] -rw-------. 1 boinc boinc   1495040 Jun  3 18:29 result.tar.gz
[2025-06-03 18:40:35] -rw-r--r--. 1 boinc boinc      8659 Jun  3 18:29 runtime_log.err
[2025-06-03 18:40:35] -rw-------. 1 boinc boinc       656 Jun  3 18:29 E2qNDmUfVg7n9Rq4apOajLDm4fhM0noT9bVof3QYDma6WKDmF4NLsm.diag
[2025-06-03 18:40:35] -rw-r--r--. 1 boinc boinc      8192 Jun  3 18:40 boinc_mmap_file
[2025-06-03 18:40:35] -rw-r--r--. 1 boinc boinc        28 Jun  3 18:40 wrapper_checkpoint.txt
[2025-06-03 18:40:35] -rw-r--r--. 1 boinc boinc     20499 Jun  3 18:40 stderr.txt
[2025-06-03 18:40:35] HITS file was successfully produced:
[2025-06-03 18:40:35] -rw-------. 1 boinc boinc 177729364 Jun  3 18:28 shared/HITS.pool.root.1
[2025-06-03 18:40:35]  *** Contents of shared directory: ***
[2025-06-03 18:40:35] total 384424
[2025-06-03 18:40:35] -rw-r--r--. 2 boinc boinc 213895750 Jun  3 14:48 ATLAS.root_0
[2025-06-03 18:40:35] -rw-r--r--. 2 boinc boinc     15093 Jun  3 14:48 start_atlas.sh
[2025-06-03 18:40:35] -rw-r--r--. 2 boinc boinc    508884 Jun  3 14:48 input.tar.gz
[2025-06-03 18:40:35] -rw-------. 1 boinc boinc 177729364 Jun  3 18:28 HITS.pool.root.1
[2025-06-03 18:40:35] -rw-------. 1 boinc boinc   1495040 Jun  3 18:29 result.tar.gz
18:40:37 (6666): run_atlas exited; CPU time 45051.612114
18:40:37 (6666): called boinc_finish(0)

</stderr_txt>
]]>

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