Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-03 12:37:22 (2284): Detected: vboxwrapper 26206
2025-06-03 12:37:22 (2284): Detected: BOINC client v8.0.2
2025-06-03 12:37:23 (2284): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-06-03 12:37:23 (2284): Successfully copied 'init_data.xml' to the shared directory.
2025-06-03 12:37:24 (2284): Create VM. (boinc_61e8c14bafaf56b0, slot#1)
2025-06-03 12:37:24 (2284): Setting Memory Size for VM. (4800MB)
2025-06-03 12:37:24 (2284): Setting CPU Count for VM. (8)
2025-06-03 12:37:25 (2284): Setting Chipset Options for VM.
2025-06-03 12:37:25 (2284): Setting Graphics Controller Options for VM.
2025-06-03 12:37:25 (2284): Setting Boot Options for VM.
2025-06-03 12:37:25 (2284): Setting Network Configuration for NAT.
2025-06-03 12:37:26 (2284): Enabling VM Network Access.
2025-06-03 12:37:26 (2284): Disabling USB Support for VM.
2025-06-03 12:37:26 (2284): Disabling COM Port Support for VM.
2025-06-03 12:37:26 (2284): Disabling LPT Port Support for VM.
2025-06-03 12:37:27 (2284): Disabling Audio Support for VM.
2025-06-03 12:37:27 (2284): Disabling Clipboard Support for VM.
2025-06-03 12:37:27 (2284): Disabling Drag and Drop Support for VM.
2025-06-03 12:37:27 (2284): Adding storage controller(s) to VM.
2025-06-03 12:37:28 (2284): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-03 12:37:31 (2284): Adding VirtualBox Guest Additions to VM.
2025-06-03 12:37:31 (2284): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-03 12:37:31 (2284): forwarding host port 54977 to guest port 80
2025-06-03 12:37:31 (2284): Enabling remote desktop for VM.
2025-06-03 12:37:32 (2284): Required extension pack not installed, remote desktop not enabled.
2025-06-03 12:37:32 (2284): Enabling shared directory for VM.
2025-06-03 12:37:32 (2284): Starting VM using VBoxManage interface. (boinc_61e8c14bafaf56b0, slot#1)
2025-06-03 12:37:38 (2284): Successfully started VM. (PID = '29184')
2025-06-03 12:37:38 (2284): Reporting VM Process ID to BOINC.
2025-06-03 12:37:38 (2284): Guest Log: BIOS: VirtualBox 7.0.6
2025-06-03 12:37:38 (2284): Guest Log: CPUID EDX: 0x178bfbff
2025-06-03 12:37:38 (2284): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-03 12:37:38 (2284): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-03 12:37:38 (2284): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-03 12:37:38 (2284): Detected: Web Application Enabled (http://localhost:54977)
2025-06-03 12:37:38 (2284): Preference change detected
2025-06-03 12:37:38 (2284): Setting CPU throttle for VM. (100%)
2025-06-03 12:37:39 (2284): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-03 12:37:40 (2284): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-03 12:37:40 (2284): Guest Log: BIOS: Booting from Hard Disk...
2025-06-03 12:37:42 (2284): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-03 12:37:42 (2284): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-03 12:37:42 (2284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-03 12:37:42 (2284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-03 12:37:42 (2284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-03 12:37:42 (2284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-03 12:37:42 (2284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-03 12:37:42 (2284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-03 12:37:42 (2284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-03 12:37:42 (2284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-03 12:37:42 (2284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-03 12:37:42 (2284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-03 12:37:42 (2284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-03 12:37:42 (2284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-03 12:37:42 (2284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-03 12:37:42 (2284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-03 12:37:42 (2284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-03 12:37:42 (2284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-03 12:37:42 (2284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-03 12:37:42 (2284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-03 12:37:42 (2284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-03 12:37:42 (2284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-03 12:37:42 (2284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-03 12:37:42 (2284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-03 12:37:42 (2284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-03 12:37:42 (2284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-03 12:37:42 (2284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-03 12:37:42 (2284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-03 12:37:42 (2284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-03 12:37:42 (2284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-03 12:37:42 (2284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-03 12:37:42 (2284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-03 12:37:47 (2284): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-03 12:37:47 (2284): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-03 12:37:53 (2284): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-03 12:37:53 (2284): Guest Log: 00:00:00.000139 main     Log opened 2025-06-03T12:37:50.730230000Z
2025-06-03 12:37:53 (2284): Guest Log: 00:00:00.000224 main     OS Product: Linux
2025-06-03 12:37:53 (2284): Guest Log: 00:00:00.000258 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-03 12:37:53 (2284): Guest Log: 00:00:00.000281 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-03 12:37:53 (2284): Guest Log: 00:00:00.000302 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-03 12:37:53 (2284): Guest Log: 00:00:00.000303 main     Process ID: 1365
2025-06-03 12:37:53 (2284): Guest Log: 00:00:00.000304 main     Package type: LINUX_64BITS_GENERIC
2025-06-03 12:37:53 (2284): Guest Log: 00:00:00.001218 main     5.2.32 r132073 started. Verbose level = 0
2025-06-03 12:37:53 (2284): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-03 12:37:53 (2284): Guest Log: [INFO] Mounting shared directory
2025-06-03 12:37:53 (2284): Guest Log: [INFO] Checking for init_data.xml
2025-06-03 12:38:03 (2284): Guest Log: 00:00:10.005566 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 587 753 662 000ns (GuestNow=1 748 950 682 980 468 000 ns GuestLast=1 748 954 270 734 130 000 ns fSetTimeLastLoop=true )
2025-06-03 12:38:18 (2284): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-03 12:38:18 (2284): Guest Log: [INFO] Detected branch: prod
2025-06-03 12:38:20 (2284): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-03 12:38:20 (2284): Guest Log: Copying input files
2025-06-03 12:38:21 (2284): Guest Log: Copied input files into RunAtlas.
2025-06-03 12:38:21 (2284): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-03 12:38:21 (2284): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-03 12:38:21 (2284): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-03 12:38:21 (2284): Guest Log: Further information can be found at the LHC@home message board.
2025-06-03 12:38:49 (2284): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-03 12:38:52 (2284): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-03 12:38:52 (2284): Guest Log: 2.6.3.0 1668 0 30164 146741 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-06-03 12:38:52 (2284): Guest Log: copied the webapp to /var/www
2025-06-03 12:38:53 (2284): Guest Log: ATHENA_PROC_NUMBER=8
2025-06-03 12:38:53 (2284): Guest Log: ATHENA_CORE_NUMBER=8
2025-06-03 12:38:55 (2284): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-03 12:38:55 (2284): Guest Log:  *** Starting ATLAS job. (PandaID=6677442968 taskID=45006595) ***
2025-06-03 12:54:25 (2284): VM state change detected. (old = 'running', new = 'paused')
2025-06-03 13:05:47 (2284): VM state change detected. (old = 'paused', new = 'running')
2025-06-03 13:25:33 (2284): VM state change detected. (old = 'running', new = 'paused')
2025-06-03 14:25:10 (2284): VM state change detected. (old = 'paused', new = 'running')
2025-06-03 14:25:12 (2284): Guest Log: 00:36:20.676328 timesync vgsvcTimeSyncWorker: Radical host time change: 3 586 544 000 000ns (HostNow=1 748 957 111 861 000 000 ns HostLast=1 748 953 525 317 000 000 ns)
2025-06-03 14:25:22 (2284): Guest Log: 00:36:30.677032 timesync vgsvcTimeSyncWorker: Radical guest time change: 4 268 211 206 000ns (GuestNow=1 748 957 121 862 086 000 ns GuestLast=1 748 952 853 650 880 000 ns fSetTimeLastLoop=true )
2025-06-03 15:02:07 (2284): Guest Log:  *** Job finished ***
2025-06-03 15:02:07 (2284): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-03 15:02:07 (2284): Guest Log: 2025-06-03 14:01:54,732 | INFO     | [data] queue_monitor thread has finished
2025-06-03 15:02:07 (2284): Guest Log: 2025-06-03 14:01:58,676 | INFO     | job.realtimelogging is not enabled
2025-06-03 15:02:07 (2284): Guest Log: 2025-06-03 14:01:59,689 | INFO     | [payload] run_realtimelog thread has finished
2025-06-03 15:02:07 (2284): Guest Log: 2025-06-03 14:02:01,298 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139762973476672)>', '<ExcThread(monitor, started 139762220377856)>']
2025-06-03 15:02:07 (2284): Guest Log: 2025-06-03 14:02:01,643 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-03 15:02:07 (2284): Guest Log: 2025-06-03 14:02:01,643 | INFO     | [monitor] control thread has ended
2025-06-03 15:02:07 (2284): Guest Log: 2025-06-03 14:02:06,311 | INFO     | all workflow threads have been joined
2025-06-03 15:02:07 (2284): Guest Log: 2025-06-03 14:02:06,311 | INFO     | end of generic workflow (traces error code: 0)
2025-06-03 15:02:07 (2284): Guest Log: 2025-06-03 14:02:06,311 | INFO     | traces error code: 0
2025-06-03 15:02:07 (2284): Guest Log: 2025-06-03 14:02:06,311 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-03 15:02:07 (2284): Guest Log: 2025-06-03 14:02:06,386 [wrapper] ==== pilot stdout END ====
2025-06-03 15:02:07 (2284): Guest Log: 2025-06-03 14:02:06,390 [wrapper] ==== wrapper stdout RESUME ====
2025-06-03 15:02:07 (2284): Guest Log: 2025-06-03 14:02:06,394 [wrapper] pilotpid: 6026
2025-06-03 15:02:07 (2284): Guest Log: 2025-06-03 14:02:06,399 [wrapper] Pilot exit status: 0
2025-06-03 15:02:07 (2284): Guest Log: 2025-06-03 14:02:06,533 [wrapper] pandaids: 6677442968
2025-06-03 15:02:07 (2284): Guest Log: 2025-06-03 14:02:06,563 [wrapper] cleanup supervisor_pilot 31325 6027
2025-06-03 15:02:07 (2284): Guest Log: 2025-06-03 14:02:06,572 [wrapper] Test setup, not cleaning
2025-06-03 15:02:07 (2284): Guest Log: 2025-06-03 14:02:06,576 [wrapper] apfmon messages muted
2025-06-03 15:02:07 (2284): Guest Log: 2025-06-03 14:02:06,580 [wrapper] ==== wrapper stdout END ====
2025-06-03 15:02:07 (2284): Guest Log: 2025-06-03 14:02:06,584 [wrapper] ==== wrapper stderr END ====
2025-06-03 15:02:07 (2284): Guest Log:  *** Error codes and diagnostics ***
2025-06-03 15:02:07 (2284): Guest Log:     "exeErrorCode": 0,
2025-06-03 15:02:07 (2284): Guest Log:     "exeErrorDiag": "",
2025-06-03 15:02:07 (2284): Guest Log:     "pilotErrorCode": 0,
2025-06-03 15:02:07 (2284): Guest Log:     "pilotErrorDiag": "",
2025-06-03 15:02:07 (2284): Guest Log:  *** Listing of results directory ***
2025-06-03 15:02:07 (2284): Guest Log: total 171328
2025-06-03 15:02:07 (2284): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  3 01:24 pilot3.tar.gz
2025-06-03 15:02:07 (2284): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  3 01:44 runpilot2-wrapper.sh
2025-06-03 15:02:07 (2284): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  3 01:44 queuedata.json
2025-06-03 15:02:07 (2284): Guest Log: -rwxr-xr-x. 1 atlas atlas      9130 Jun  3 11:38 init_data.xml
2025-06-03 15:02:07 (2284): Guest Log: -rwxr-xr-x. 1 atlas atlas    508877 Jun  3 11:38 input.tar.gz
2025-06-03 15:02:07 (2284): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  3 11:38 start_atlas.sh
2025-06-03 15:02:07 (2284): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  3 11:38 EVNT.45006593._000663.pool.root.1 -> /data/./ATLAS.root_0
2025-06-03 15:02:07 (2284): Guest Log: -rw-r--r--. 1 atlas atlas      2524 Jun  3 11:38 pandaJob.out
2025-06-03 15:02:07 (2284): Guest Log: -rw-------. 1 atlas atlas    982666 Jun  3 11:40 agis_schedconf.cvmfs.json
2025-06-03 15:02:07 (2284): Guest Log: -rw-------. 1 atlas atlas   1603667 Jun  3 11:40 agis_ddmendpoints.agis.ALL.json
2025-06-03 15:02:07 (2284): Guest Log: drwx------. 4 atlas atlas      4096 Jun  3 11:40 pilot3
2025-06-03 15:02:07 (2284): Guest Log: -rw-------. 1 atlas atlas 170326444 Jun  3 14:01 HITS.45006595._016566.pool.root.1
2025-06-03 15:02:07 (2284): Guest Log: -rw-------. 1 atlas atlas        97 Jun  3 14:01 pilot_heartbeat.json
2025-06-03 15:02:07 (2284): Guest Log: -rw-------. 1 atlas atlas      1032 Jun  3 14:01 memory_monitor_summary.json
2025-06-03 15:02:07 (2284): Guest Log: -rw-------. 1 atlas atlas    296601 Jun  3 14:01 log.45006595._016566.job.log.tgz.1
2025-06-03 15:02:07 (2284): Guest Log: -rw-------. 1 atlas atlas      7729 Jun  3 14:01 heartbeat.json
2025-06-03 15:02:07 (2284): Guest Log: -rw-------. 1 atlas atlas      4608 Jun  3 14:02 pilotlog.txt
2025-06-03 15:02:07 (2284): Guest Log: -rw-------. 1 atlas atlas    377883 Jun  3 14:02 log.45006595._016566.job.log.1
2025-06-03 15:02:07 (2284): Guest Log: -rw-------. 1 atlas atlas       357 Jun  3 14:02 output.list
2025-06-03 15:02:07 (2284): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  3 14:02 runtime_log
2025-06-03 15:02:07 (2284): Guest Log: -rw-------. 1 atlas atlas    696320 Jun  3 14:02 result.tar.gz
2025-06-03 15:02:07 (2284): Guest Log: -rw-r--r--. 1 atlas atlas      8583 Jun  3 14:02 runtime_log.err
2025-06-03 15:02:07 (2284): Guest Log: -rw-------. 1 atlas atlas       650 Jun  3 14:02 3mvNDmQsVg7n9Rq4apOajLDm4fhM0noT9bVof3QYDm78WKDmNsYc4m.diag
2025-06-03 15:02:07 (2284): Guest Log: Looking for outputfile HITS.45006595._016566.pool.root.1
2025-06-03 15:02:07 (2284): Guest Log: HITS file was successfully produced
2025-06-03 15:02:07 (2284): Guest Log: -rw-------. 1 atlas atlas 170326444 Jun  3 14:01 /home/atlas/RunAtlas/HITS.45006595._016566.pool.root.1
2025-06-03 15:02:08 (2284): Guest Log: Successfully finished the ATLAS job!
2025-06-03 15:02:08 (2284): Guest Log: Copying the results back to the shared directory!
2025-06-03 15:02:08 (2284): Guest Log:  *** Contents of shared directory: ***
2025-06-03 15:02:08 (2284): Guest Log: total 378288
2025-06-03 15:02:08 (2284): Guest Log: -rwxrwxrwx. 1 root root 215798155 Jun  3 11:37 ATLAS.root_0
2025-06-03 15:02:08 (2284): Guest Log: -rwxrwxrwx. 1 root root 170326444 Jun  3 14:02 HITS.pool.root.1
2025-06-03 15:02:08 (2284): Guest Log: -rwxrwxrwx. 1 root root      9130 Jun  3 11:37 init_data.xml
2025-06-03 15:02:08 (2284): Guest Log: -rwxrwxrwx. 1 root root    508877 Jun  3 05:23 input.tar.gz
2025-06-03 15:02:08 (2284): Guest Log: -rwxrwxrwx. 1 root root    696320 Jun  3 14:02 result.tar.gz
2025-06-03 15:02:08 (2284): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  3 05:23 start_atlas.sh
2025-06-03 15:02:08 (2284): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-03 15:02:08 (2284): VM Completion File Detected.
2025-06-03 15:02:08 (2284): Powering off VM.
2025-06-03 15:02:08 (2284): Successfully stopped VM.
2025-06-03 15:02:08 (2284): Deregistering VM. (boinc_61e8c14bafaf56b0, slot#1)
2025-06-03 15:02:08 (2284): Removing network bandwidth throttle group from VM.
2025-06-03 15:02:08 (2284): Removing VM from VirtualBox.
15:02:13 (2284): called boinc_finish(0)

</stderr_txt>
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