Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:45:54 (20883): wrapper (7.7.26015): starting
13:45:54 (20883): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 13:45:54] Arguments: --nthreads 8
[2025-06-03 13:45:54] Threads: 8
[2025-06-03 13:45:54] Checking for CVMFS
[2025-06-03 13:45:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 13:45:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 13:45:56] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 13:45:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 13:45:57] 2.11.2.0 12147 31725 99616 146741 2 200 19984242 25165824 4585 130560 0 16788871 99.724 19301384 2062 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 13:45:57] CVMFS is ok
[2025-06-03 13:45:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 13:45:57] Checking for apptainer binary...
[2025-06-03 13:45:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 13:45:57] Running /usr/bin/apptainer --version
[2025-06-03 13:45:57] apptainer version 1.3.2-1.el7
[2025-06-03 13:45:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 14:02:06] cg-vwn304.simple-grid.lan
[2025-06-03 14:02:06] apptainer works
[2025-06-03 14:02:06] Set ATHENA_PROC_NUMBER=8
[2025-06-03 14:02:06] Set ATHENA_CORE_NUMBER=8
[2025-06-03 14:02:06] Starting ATLAS job with PandaID=6677440502
[2025-06-03 14:02:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 17:58:26]  *** The last 200 lines of the pilot log: ***
[2025-06-03 17:58:26] 2025-06-03 15:51:02,380 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 17:58:26] 2025-06-03 15:51:02,380 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 17:58:26] 2025-06-03 15:51:02,380 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 17:58:26] 2025-06-03 15:51:02,380 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 17:58:26] 2025-06-03 15:51:02,385 | INFO     | fitting pss+swap vs Time
[2025-06-03 17:58:26] 2025-06-03 15:51:02,386 | INFO     | sum of square deviations: 2996454322.0
[2025-06-03 17:58:26] 2025-06-03 15:51:02,387 | INFO     | sum of deviations: 33597654724.99997
[2025-06-03 17:58:26] 2025-06-03 15:51:02,388 | INFO     | mean x: 1748959274.0
[2025-06-03 17:58:26] 2025-06-03 15:51:02,388 | INFO     | mean y: 2480071.8169014086
[2025-06-03 17:58:26] 2025-06-03 15:51:02,388 | INFO     | -- intersect: -19607673630.348766
[2025-06-03 17:58:26] 2025-06-03 15:51:02,388 | INFO     | intersect: -19607673630.348766
[2025-06-03 17:58:26] 2025-06-03 15:51:02,388 | INFO     | chi2: 7.5865776250301735
[2025-06-03 17:58:26] 2025-06-03 15:51:02,389 | INFO     | sum of square deviations: 2790348132.0
[2025-06-03 17:58:26] 2025-06-03 15:51:02,390 | INFO     | sum of deviations: 47589440207.5
[2025-06-03 17:58:26] 2025-06-03 15:51:02,390 | INFO     | mean x: 1748959121.5
[2025-06-03 17:58:26] 2025-06-03 15:51:02,391 | INFO     | mean y: 2490226.908653846
[2025-06-03 17:58:26] 2025-06-03 15:51:02,391 | INFO     | -- intersect: -29826040694.904648
[2025-06-03 17:58:26] 2025-06-03 15:51:02,391 | INFO     | intersect: -29826040694.904648
[2025-06-03 17:58:26] 2025-06-03 15:51:02,391 | INFO     | chi2: 6.894409131802658
[2025-06-03 17:58:26] 2025-06-03 15:51:02,391 | INFO     | current chi2=6.894409131802658 (change=9.123593370268356 %)
[2025-06-03 17:58:26] 2025-06-03 15:51:02,392 | INFO     | right removable region: 207
[2025-06-03 17:58:26] 2025-06-03 15:51:02,392 | INFO     | sum of square deviations: 2790348132.0
[2025-06-03 17:58:26] 2025-06-03 15:51:02,394 | INFO     | sum of deviations: -42628982610.5
[2025-06-03 17:58:26] 2025-06-03 15:51:02,394 | INFO     | mean x: 1748959426.5
[2025-06-03 17:58:26] 2025-06-03 15:51:02,394 | INFO     | mean y: 2536437.908653846
[2025-06-03 17:58:26] 2025-06-03 15:51:02,394 | INFO     | -- intersect: 26721912462.612713
[2025-06-03 17:58:26] 2025-06-03 15:51:02,394 | INFO     | intersect: 26721912462.612713
[2025-06-03 17:58:26] 2025-06-03 15:51:02,395 | INFO     | chi2: 2.4585537133592124
[2025-06-03 17:58:26] 2025-06-03 15:51:02,395 | INFO     | current chi2=2.4585537133592124 (change=67.59337563161843 %)
[2025-06-03 17:58:26] 2025-06-03 15:51:02,395 | INFO     | sum of square deviations: 2593916542.0
[2025-06-03 17:58:26] 2025-06-03 15:51:02,399 | INFO     | sum of deviations: -79243895494.00002
[2025-06-03 17:58:26] 2025-06-03 15:51:02,399 | INFO     | mean x: 1748959579.0
[2025-06-03 17:58:26] 2025-06-03 15:51:02,400 | INFO     | mean y: 2564671.6748768473
[2025-06-03 17:58:26] 2025-06-03 15:51:02,400 | INFO     | -- intersect: 53433107966.89022
[2025-06-03 17:58:26] 2025-06-03 15:51:02,400 | INFO     | intersect: 53433107966.89022
[2025-06-03 17:58:26] 2025-06-03 15:51:02,400 | INFO     | chi2: 1.0016511674080053
[2025-06-03 17:58:26] 2025-06-03 15:51:02,400 | INFO     | current chi2=1.0016511674080053 (change=59.258520081734865 %)
[2025-06-03 17:58:26] 2025-06-03 15:51:02,401 | INFO     | sum of square deviations: 2406926989.5
[2025-06-03 17:58:26] 2025-06-03 15:51:02,402 | INFO     | sum of deviations: -78619005241.5
[2025-06-03 17:58:26] 2025-06-03 15:51:02,402 | INFO     | mean x: 1748959731.5
[2025-06-03 17:58:26] 2025-06-03 15:51:02,402 | INFO     | mean y: 2564117.0757575757
[2025-06-03 17:58:26] 2025-06-03 15:51:02,402 | INFO     | -- intersect: 57129961374.16274
[2025-06-03 17:58:26] 2025-06-03 15:51:02,402 | INFO     | intersect: 57129961374.16274
[2025-06-03 17:58:26] 2025-06-03 15:51:02,403 | INFO     | chi2: 0.9741042486349248
[2025-06-03 17:58:26] 2025-06-03 15:51:02,403 | INFO     | current chi2=0.9741042486349248 (change=2.750150917745569 %)
[2025-06-03 17:58:26] 2025-06-03 15:51:02,403 | INFO     | left removable region: 30
[2025-06-03 17:58:26] 2025-06-03 15:51:02,403 | INFO     | sum of square deviations: 1719429448.0
[2025-06-03 17:58:26] 2025-06-03 15:51:02,405 | INFO     | sum of deviations: -46885505910.99999
[2025-06-03 17:58:26] 2025-06-03 15:51:02,405 | INFO     | mean x: 1748960006.0
[2025-06-03 17:58:26] 2025-06-03 15:51:02,405 | INFO     | mean y: 2562434.593220339
[2025-06-03 17:58:26] 2025-06-03 15:51:02,405 | INFO     | -- intersect: 47693309382.53986
[2025-06-03 17:58:26] 2025-06-03 15:51:02,405 | INFO     | intersect: 47693309382.53986
[2025-06-03 17:58:26] 2025-06-03 15:51:02,405 | INFO     | chi2: 0.17583653323035064
[2025-06-03 17:58:26] 2025-06-03 15:51:02,406 | INFO     | -- intersect: 47693309382.53986
[2025-06-03 17:58:26] 2025-06-03 15:51:02,406 | INFO     | current memory leak: -27.27 B/s (using 177 data points, chi2=0.18)
[2025-06-03 17:58:26] 2025-06-03 15:51:02,406 | INFO     | ..............................
[2025-06-03 17:58:26] 2025-06-03 15:51:02,407 | INFO     | . Timing measurements:
[2025-06-03 17:58:26] 2025-06-03 15:51:02,407 | INFO     | . get job = 0 s
[2025-06-03 17:58:26] 2025-06-03 15:51:02,407 | INFO     | . initial setup = 10 s
[2025-06-03 17:58:26] 2025-06-03 15:51:02,407 | INFO     | . payload setup = 156 s
[2025-06-03 17:58:26] 2025-06-03 15:51:02,407 | INFO     | . stage-in = 0 s
[2025-06-03 17:58:26] 2025-06-03 15:51:02,407 | INFO     | . payload execution = 13092 s
[2025-06-03 17:58:26] 2025-06-03 15:51:02,407 | INFO     | . stage-out = 4 s
[2025-06-03 17:58:26] 2025-06-03 15:51:02,407 | INFO     | . log creation = 1 s
[2025-06-03 17:58:26] 2025-06-03 15:51:02,407 | INFO     | ..............................
[2025-06-03 17:58:26] 2025-06-03 15:51:02,553 | INFO     | 
[2025-06-03 17:58:26] 2025-06-03 15:51:02,554 | INFO     | job summary report
[2025-06-03 17:58:26] 2025-06-03 15:51:02,554 | INFO     | --------------------------------------------------
[2025-06-03 17:58:26] 2025-06-03 15:51:02,554 | INFO     | PanDA job id: 6677440502
[2025-06-03 17:58:26] 2025-06-03 15:51:02,554 | INFO     | task id: 45006595
[2025-06-03 17:58:26] 2025-06-03 15:51:02,554 | INFO     | errors: (none)
[2025-06-03 17:58:26] 2025-06-03 15:51:02,554 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 17:58:26] 2025-06-03 15:51:02,554 | INFO     | pilot state: finished 
[2025-06-03 17:58:26] 2025-06-03 15:51:02,554 | INFO     | transexitcode: 0
[2025-06-03 17:58:26] 2025-06-03 15:51:02,554 | INFO     | exeerrorcode: 0
[2025-06-03 17:58:26] 2025-06-03 15:51:02,555 | INFO     | exeerrordiag: 
[2025-06-03 17:58:26] 2025-06-03 15:51:02,555 | INFO     | exitcode: 0
[2025-06-03 17:58:26] 2025-06-03 15:51:02,555 | INFO     | exitmsg: OK
[2025-06-03 17:58:26] 2025-06-03 15:51:02,555 | INFO     | cpuconsumptiontime: 48804 s
[2025-06-03 17:58:26] 2025-06-03 15:51:02,555 | INFO     | nevents: 400
[2025-06-03 17:58:26] 2025-06-03 15:51:02,555 | INFO     | neventsw: 0
[2025-06-03 17:58:26] 2025-06-03 15:51:02,555 | INFO     | pid: 9353
[2025-06-03 17:58:26] 2025-06-03 15:51:02,555 | INFO     | pgrp: 9353
[2025-06-03 17:58:26] 2025-06-03 15:51:02,555 | INFO     | corecount: 8
[2025-06-03 17:58:26] 2025-06-03 15:51:02,555 | INFO     | event service: False
[2025-06-03 17:58:26] 2025-06-03 15:51:02,555 | INFO     | sizes: {0: 2404354, 1: 2405039, 2: 2405238, 12: 2405238, 23: 2405266, 34: 2405294, 45: 2405450, 55: 2405478, 66: 2405506, 77: 2405534, 88: 2405590, 94: 2406104, 98
[2025-06-03 17:58:26] 2025-06-03 15:51:02,556 | INFO     | --------------------------------------------------
[2025-06-03 17:58:26] 2025-06-03 15:51:02,556 | INFO     | 
[2025-06-03 17:58:26] 2025-06-03 15:51:02,556 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-06-03 17:58:26] 2025-06-03 15:51:03,050 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 17:58:26] 2025-06-03 15:51:03,051 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 17:58:26] 2025-06-03 15:51:03,051 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 17:58:26] 2025-06-03 15:51:03,051 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 17:58:26] 2025-06-03 15:51:03,051 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 17:58:26] 2025-06-03 15:51:03,051 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 17:58:26] 2025-06-03 15:51:03,051 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 17:58:26] 2025-06-03 15:51:03,051 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 17:58:26] 2025-06-03 15:51:03,051 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 17:58:26] 2025-06-03 15:51:03,051 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 17:58:26] 2025-06-03 15:51:03,051 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 17:58:26] 2025-06-03 15:51:03,052 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 17:58:26] 2025-06-03 15:51:03,052 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 17:58:26] 2025-06-03 15:51:03,052 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 17:58:26] 2025-06-03 15:51:03,052 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 17:58:26] 2025-06-03 15:51:03,052 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 17:58:26] 2025-06-03 15:51:03,052 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 17:58:26] 2025-06-03 15:51:03,052 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 17:58:26] 2025-06-03 15:51:03,052 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 17:58:26] 2025-06-03 15:51:03,052 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 17:58:26] 2025-06-03 15:51:03,052 | INFO     | job 6677440502 has completed (purged errors)
[2025-06-03 17:58:26] 2025-06-03 15:51:03,053 | INFO     | overall cleanup function is called
[2025-06-03 17:58:26] 2025-06-03 15:51:04,062 | INFO     | --- collectZombieJob: --- 10, [9353]
[2025-06-03 17:58:26] 2025-06-03 15:51:04,062 | INFO     | zombie collector waiting for pid 9353
[2025-06-03 17:58:26] 2025-06-03 15:51:04,062 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 17:58:26] 2025-06-03 15:51:04,062 | INFO     | collected zombie processes
[2025-06-03 17:58:26] 2025-06-03 15:51:04,062 | INFO     | will attempt to kill all subprocesses of pid=9353
[2025-06-03 17:58:26] 2025-06-03 15:51:04,198 | INFO     | process IDs to be killed: [9353] (in reverse order)
[2025-06-03 17:58:26] 2025-06-03 15:51:04,875 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 17:58:26] 2025-06-03 15:51:04,876 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 17:58:26] 2025-06-03 15:51:04,879 | INFO     | did not find any defunct processes belonging to 9353
[2025-06-03 17:58:26] 2025-06-03 15:51:04,882 | INFO     | did not find any defunct processes belonging to 9353
[2025-06-03 17:58:26] 2025-06-03 15:51:04,882 | INFO     | ready for new job
[2025-06-03 17:58:26] 2025-06-03 15:51:04,882 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 17:58:26] 2025-06-03 15:51:04,888 | INFO     | **************************************
[2025-06-03 17:58:26] 2025-06-03 15:51:04,888 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 17:58:26] 2025-06-03 15:51:04,888 | INFO     | **************************************
[2025-06-03 17:58:26] 2025-06-03 15:51:04,888 | INFO     | 
[2025-06-03 17:58:26] 2025-06-03 15:51:04,889 | INFO     | pilot is running in a VM
[2025-06-03 17:58:26] 2025-06-03 15:51:04,889 | INFO     | architecture information:
[2025-06-03 17:58:26] 2025-06-03 15:51:04,901 | INFO     | executing command: cat /etc/os-release
[2025-06-03 17:58:26] 2025-06-03 15:51:05,003 | INFO     | cat /etc/os-release:
[2025-06-03 17:58:26] NAME="CentOS Linux"
[2025-06-03 17:58:26] VERSION="7 (Core)"
[2025-06-03 17:58:26] ID="centos"
[2025-06-03 17:58:26] ID_LIKE="rhel fedora"
[2025-06-03 17:58:26] VERSION_ID="7"
[2025-06-03 17:58:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 17:58:26] ANSI_COLOR="0;31"
[2025-06-03 17:58:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 17:58:26] HOME_URL="https://www.centos.org/"
[2025-06-03 17:58:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 17:58:26] 
[2025-06-03 17:58:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 17:58:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 17:58:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 17:58:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 17:58:26] 
[2025-06-03 17:58:26] 2025-06-03 15:51:05,003 | INFO     | **************************************
[2025-06-03 17:58:26] 2025-06-03 15:51:05,506 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-06-03 17:58:26] 2025-06-03 15:51:05,566 | INFO     | sufficient remaining disk space (496522756096 B)
[2025-06-03 17:58:26] 2025-06-03 15:51:05,566 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 17:58:26] 2025-06-03 15:51:05,566 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 17:58:26] 2025-06-03 15:51:05,566 | INFO     | update_server=False
[2025-06-03 17:58:26] 2025-06-03 15:51:05,566 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 17:58:26] 2025-06-03 15:51:05,567 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 17:58:26] 2025-06-03 15:51:05,567 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 17:58:26] 2025-06-03 15:51:05,567 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 17:58:26] 2025-06-03 15:51:05,568 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 17:58:26] 2025-06-03 15:51:05,574 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 17:58:26] 2025-06-03 15:51:05,835 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 17:58:26] 2025-06-03 15:51:05,835 | INFO     | aborting loop
[2025-06-03 17:58:26] 2025-06-03 15:51:05,878 | INFO     | all data control threads have been joined
[2025-06-03 17:58:26] 2025-06-03 15:51:06,432 | INFO     | all job control threads have been joined
[2025-06-03 17:58:26] 2025-06-03 15:51:06,573 | INFO     | [job] retrieve thread has finished
[2025-06-03 17:58:26] 2025-06-03 15:51:06,614 | INFO     | [job] validate thread has finished
[2025-06-03 17:58:26] 2025-06-03 15:51:06,643 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 17:58:26] 2025-06-03 15:51:06,841 | INFO     | [job] job monitor thread has finished
[2025-06-03 17:58:26] 2025-06-03 15:51:06,884 | INFO     | [data] control thread has finished
[2025-06-03 17:58:26] 2025-06-03 15:51:06,889 | INFO     | all payload control threads have been joined
[2025-06-03 17:58:26] 2025-06-03 15:51:06,950 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 17:58:26] 2025-06-03 15:51:07,265 | INFO     | [data] copytool_in thread has finished
[2025-06-03 17:58:26] 2025-06-03 15:51:07,425 | INFO     | [payload] failed_post thread has finished
[2025-06-03 17:58:26] 2025-06-03 15:51:07,437 | INFO     | [job] control thread has finished
[2025-06-03 17:58:26] 2025-06-03 15:51:07,480 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 17:58:26] 2025-06-03 15:51:07,512 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 17:58:26] 2025-06-03 15:51:07,570 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 17:58:26] 2025-06-03 15:51:07,581 | INFO     | [data] copytool_out thread has finished
[2025-06-03 17:58:26] 2025-06-03 15:51:07,895 | INFO     | [payload] control thread has finished
[2025-06-03 17:58:26] 2025-06-03 15:51:07,932 | INFO     | [payload] validate_post thread has finished
[2025-06-03 17:58:26] 2025-06-03 15:51:08,576 | INFO     | [job] queue monitor thread has finished
[2025-06-03 17:58:26] 2025-06-03 15:51:11,489 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 17:58:26] 2025-06-03 15:51:16,362 | INFO     | job.realtimelogging is not enabled
[2025-06-03 17:58:26] 2025-06-03 15:51:17,369 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 17:58:26] 2025-06-03 15:51:18,151 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140015725725504)>', '<ExcThread(monitor, started 140014851712768)>']
[2025-06-03 17:58:26] 2025-06-03 15:51:18,646 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 17:58:26] 2025-06-03 15:51:18,646 | INFO     | [monitor] control thread has ended
[2025-06-03 17:58:26] 2025-06-03 15:51:23,177 | INFO     | all workflow threads have been joined
[2025-06-03 17:58:26] 2025-06-03 15:51:23,177 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 17:58:26] 2025-06-03 15:51:23,177 | INFO     | traces error code: 0
[2025-06-03 17:58:26] 2025-06-03 15:51:23,177 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 17:58:26] 2025-06-03 15:51:23,427 [wrapper] ==== pilot stdout END ====
[2025-06-03 17:58:26] 2025-06-03 15:51:23,486 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 17:58:26] 2025-06-03 15:51:23,556 [wrapper] pilotpid: 2654
[2025-06-03 17:58:26] 2025-06-03 15:51:23,597 [wrapper] Pilot exit status: 0
[2025-06-03 17:58:26] 2025-06-03 15:51:24,039 [wrapper] pandaids: 6677440502
[2025-06-03 17:58:26] 2025-06-03 15:51:24,546 [wrapper] cleanup supervisor_pilot 24103 2655
[2025-06-03 17:58:26] 2025-06-03 15:51:24,633 [wrapper] Test setup, not cleaning
[2025-06-03 17:58:26] 2025-06-03 15:51:24,711 [wrapper] apfmon messages muted
[2025-06-03 17:58:26] 2025-06-03 15:51:24,739 [wrapper] ==== wrapper stdout END ====
[2025-06-03 17:58:26] 2025-06-03 15:51:24,863 [wrapper] ==== wrapper stderr END ====
[2025-06-03 17:58:26]  *** Error codes and diagnostics ***
[2025-06-03 17:58:26]     "exeErrorCode": 0,
[2025-06-03 17:58:26]     "exeErrorDiag": "",
[2025-06-03 17:58:26]     "pilotErrorCode": 0,
[2025-06-03 17:58:26]     "pilotErrorDiag": "",
[2025-06-03 17:58:26]  *** Listing of results directory ***
[2025-06-03 17:58:26] total 391752
[2025-06-03 17:58:26] -rw-r--r--. 1 boinc boinc    495897 Jun  3 02:19 pilot3.tar.gz
[2025-06-03 17:58:26] -rwx------. 1 boinc boinc     37140 Jun  3 02:32 runpilot2-wrapper.sh
[2025-06-03 17:58:26] -rw-r--r--. 1 boinc boinc      5111 Jun  3 02:32 queuedata.json
[2025-06-03 17:58:26] -rw-r--r--. 1 boinc boinc       100 Jun  3 13:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 17:58:26] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 13:45 run_atlas
[2025-06-03 17:58:26] -rw-r--r--. 1 boinc boinc       105 Jun  3 13:45 job.xml
[2025-06-03 17:58:26] -rw-r--r--. 2 boinc boinc 215678995 Jun  3 13:45 EVNT.45006593._000613.pool.root.1
[2025-06-03 17:58:26] -rw-r--r--. 2 boinc boinc     15093 Jun  3 13:45 start_atlas.sh
[2025-06-03 17:58:26] drwxrwx--x. 2 boinc boinc        68 Jun  3 13:45 shared
[2025-06-03 17:58:26] -rw-r--r--. 2 boinc boinc    508877 Jun  3 13:45 input.tar.gz
[2025-06-03 17:58:26] -rw-r--r--. 1 boinc boinc      6391 Jun  3 13:45 init_data.xml
[2025-06-03 17:58:26] -rw-r--r--. 1 boinc boinc         0 Jun  3 13:45 boinc_lockfile
[2025-06-03 17:58:26] -rw-r--r--. 1 boinc boinc      2524 Jun  3 14:02 pandaJob.out
[2025-06-03 17:58:26] -rw-------. 1 boinc boinc    982666 Jun  3 14:05 agis_schedconf.cvmfs.json
[2025-06-03 17:58:26] drwx------. 4 boinc boinc      4096 Jun  3 14:05 pilot3
[2025-06-03 17:58:26] -rw-------. 1 boinc boinc 178602161 Jun  3 17:48 HITS.45006595._015307.pool.root.1
[2025-06-03 17:58:26] -rw-r--r--. 1 boinc boinc       531 Jun  3 17:48 boinc_task_state.xml
[2025-06-03 17:58:26] -rw-------. 1 boinc boinc      1013 Jun  3 17:49 memory_monitor_summary.json
[2025-06-03 17:58:26] -rw-------. 1 boinc boinc   1603667 Jun  3 17:49 agis_ddmendpoints.agis.ALL.json
[2025-06-03 17:58:26] -rw-------. 1 boinc boinc    366825 Jun  3 17:49 log.45006595._015307.job.log.tgz.1
[2025-06-03 17:58:26] -rw-------. 1 boinc boinc        95 Jun  3 17:50 pilot_heartbeat.json
[2025-06-03 17:58:26] -rw-------. 1 boinc boinc      7693 Jun  3 17:51 heartbeat.json
[2025-06-03 17:58:26] -rw-------. 1 boinc boinc      4611 Jun  3 17:51 pilotlog.txt
[2025-06-03 17:58:26] -rw-------. 1 boinc boinc   1155653 Jun  3 17:51 log.45006595._015307.job.log.1
[2025-06-03 17:58:26] -rw-------. 1 boinc boinc       357 Jun  3 17:51 output.list
[2025-06-03 17:58:26] -rw-r--r--. 1 boinc boinc       620 Jun  3 17:51 runtime_log
[2025-06-03 17:58:26] -rw-------. 1 boinc boinc   1546240 Jun  3 17:51 result.tar.gz
[2025-06-03 17:58:26] -rw-------. 1 boinc boinc       656 Jun  3 17:51 yupKDmXlUg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmRHhKDm7Esjam.diag
[2025-06-03 17:58:26] -rw-r--r--. 1 boinc boinc      8659 Jun  3 17:51 runtime_log.err
[2025-06-03 17:58:26] -rw-r--r--. 1 boinc boinc      8192 Jun  3 17:58 boinc_mmap_file
[2025-06-03 17:58:26] -rw-r--r--. 1 boinc boinc        28 Jun  3 17:58 wrapper_checkpoint.txt
[2025-06-03 17:58:26] -rw-r--r--. 1 boinc boinc     20496 Jun  3 17:58 stderr.txt
[2025-06-03 17:58:26] HITS file was successfully produced:
[2025-06-03 17:58:26] -rw-------. 1 boinc boinc 178602161 Jun  3 17:48 shared/HITS.pool.root.1
[2025-06-03 17:58:26]  *** Contents of shared directory: ***
[2025-06-03 17:58:26] total 387076
[2025-06-03 17:58:26] -rw-r--r--. 2 boinc boinc 215678995 Jun  3 13:45 ATLAS.root_0
[2025-06-03 17:58:26] -rw-r--r--. 2 boinc boinc     15093 Jun  3 13:45 start_atlas.sh
[2025-06-03 17:58:26] -rw-r--r--. 2 boinc boinc    508877 Jun  3 13:45 input.tar.gz
[2025-06-03 17:58:26] -rw-------. 1 boinc boinc 178602161 Jun  3 17:48 HITS.pool.root.1
[2025-06-03 17:58:26] -rw-------. 1 boinc boinc   1546240 Jun  3 17:51 result.tar.gz
17:58:28 (20883): run_atlas exited; CPU time 48992.877120
17:58:28 (20883): called boinc_finish(0)

</stderr_txt>
]]>

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