Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:36:39 (28890): wrapper (7.7.26015): starting
16:36:39 (28890): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 16:36:39] Arguments: --nthreads 8
[2025-06-03 16:36:39] Threads: 8
[2025-06-03 16:36:39] Checking for CVMFS
[2025-06-03 16:36:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 16:36:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 16:36:41] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 16:36:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 16:36:41] 2.11.2.0 8420 31911 92564 146743 0 155 15921307 25165825 4359 130560 0 16248318 99.809 18696765 2112 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 16:36:41] CVMFS is ok
[2025-06-03 16:36:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 16:36:41] Checking for apptainer binary...
[2025-06-03 16:36:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 16:36:41] Running /usr/bin/apptainer --version
[2025-06-03 16:36:41] apptainer version 1.3.2-1.el7
[2025-06-03 16:36:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 16:36:43] cg-vwn396.simple-grid.lan
[2025-06-03 16:36:43] apptainer works
[2025-06-03 16:36:43] Set ATHENA_PROC_NUMBER=8
[2025-06-03 16:36:43] Set ATHENA_CORE_NUMBER=8
[2025-06-03 16:36:43] Starting ATLAS job with PandaID=6677420549
[2025-06-03 16:36:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 20:38:03]  *** The last 200 lines of the pilot log: ***
[2025-06-03 20:38:03] 2025-06-03 18:27:43,398 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6677420549/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 20:38:03] 2025-06-03 18:27:43,399 | INFO     | extracted standard info from prmon json
[2025-06-03 20:38:03] 2025-06-03 18:27:43,399 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 20:38:03] 2025-06-03 18:27:43,399 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 20:38:03] 2025-06-03 18:27:43,400 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 20:38:03] 2025-06-03 18:27:43,400 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 20:38:03] 2025-06-03 18:27:43,405 | INFO     | fitting pss+swap vs Time
[2025-06-03 20:38:03] 2025-06-03 18:27:43,405 | INFO     | sum of square deviations: 3531973200.0
[2025-06-03 20:38:03] 2025-06-03 18:27:43,407 | INFO     | sum of deviations: -28673731980.00001
[2025-06-03 20:38:03] 2025-06-03 18:27:43,416 | INFO     | mean x: 1748968344.0
[2025-06-03 20:38:03] 2025-06-03 18:27:43,416 | INFO     | mean y: 2486271.72
[2025-06-03 20:38:03] 2025-06-03 18:27:43,416 | INFO     | -- intersect: 14201192404.982975
[2025-06-03 20:38:03] 2025-06-03 18:27:43,417 | INFO     | intersect: 14201192404.982975
[2025-06-03 20:38:03] 2025-06-03 18:27:43,417 | INFO     | chi2: 3.8600392033536597
[2025-06-03 20:38:03] 2025-06-03 18:27:43,417 | INFO     | sum of square deviations: 3301699115.0
[2025-06-03 20:38:03] 2025-06-03 18:27:43,419 | INFO     | sum of deviations: 2334879523.500004
[2025-06-03 20:38:03] 2025-06-03 18:27:43,420 | INFO     | mean x: 1748968191.5
[2025-06-03 20:38:03] 2025-06-03 18:27:43,420 | INFO     | mean y: 2506537.168181818
[2025-06-03 20:38:03] 2025-06-03 18:27:43,420 | INFO     | -- intersect: -1234320283.0086722
[2025-06-03 20:38:03] 2025-06-03 18:27:43,420 | INFO     | intersect: -1234320283.0086722
[2025-06-03 20:38:03] 2025-06-03 18:27:43,420 | INFO     | chi2: 2.226224688202558
[2025-06-03 20:38:03] 2025-06-03 18:27:43,420 | INFO     | current chi2=2.226224688202558 (change=42.32637103093718 %)
[2025-06-03 20:38:03] 2025-06-03 18:27:43,421 | INFO     | sum of square deviations: 3081657780.0
[2025-06-03 20:38:03] 2025-06-03 18:27:43,423 | INFO     | sum of deviations: 2384799636.000002
[2025-06-03 20:38:03] 2025-06-03 18:27:43,423 | INFO     | mean x: 1748968039.0
[2025-06-03 20:38:03] 2025-06-03 18:27:43,423 | INFO     | mean y: 2506571.772093023
[2025-06-03 20:38:03] 2025-06-03 18:27:43,423 | INFO     | -- intersect: -1350965695.6069398
[2025-06-03 20:38:03] 2025-06-03 18:27:43,423 | INFO     | intersect: -1350965695.6069398
[2025-06-03 20:38:03] 2025-06-03 18:27:43,424 | INFO     | chi2: 2.2266792274978164
[2025-06-03 20:38:03] 2025-06-03 18:27:43,435 | INFO     | current chi2=2.2266792274978164 (change=-0.020417494140073506 %)
[2025-06-03 20:38:03] 2025-06-03 18:27:43,435 | INFO     | right removable region: 214
[2025-06-03 20:38:03] 2025-06-03 18:27:43,436 | INFO     | sum of square deviations: 3301699115.0
[2025-06-03 20:38:03] 2025-06-03 18:27:43,438 | INFO     | sum of deviations: -73199274283.0
[2025-06-03 20:38:03] 2025-06-03 18:27:43,438 | INFO     | mean x: 1748968496.5
[2025-06-03 20:38:03] 2025-06-03 18:27:43,438 | INFO     | mean y: 2515540.463636364
[2025-06-03 20:38:03] 2025-06-03 18:27:43,438 | INFO     | -- intersect: 38777467535.93935
[2025-06-03 20:38:03] 2025-06-03 18:27:43,438 | INFO     | intersect: 38777467535.93935
[2025-06-03 20:38:03] 2025-06-03 18:27:43,438 | INFO     | chi2: 1.914266550367853
[2025-06-03 20:38:03] 2025-06-03 18:27:43,439 | INFO     | current chi2=1.914266550367853 (change=50.40810599268759 %)
[2025-06-03 20:38:03] 2025-06-03 18:27:43,439 | INFO     | sum of square deviations: 3081657780.0
[2025-06-03 20:38:03] 2025-06-03 18:27:43,441 | INFO     | sum of deviations: -71467041423.00003
[2025-06-03 20:38:03] 2025-06-03 18:27:43,441 | INFO     | mean x: 1748968649.0
[2025-06-03 20:38:03] 2025-06-03 18:27:43,441 | INFO     | mean y: 2514295.2511627907
[2025-06-03 20:38:03] 2025-06-03 18:27:43,441 | INFO     | -- intersect: 40563025490.498604
[2025-06-03 20:38:03] 2025-06-03 18:27:43,441 | INFO     | intersect: 40563025490.498604
[2025-06-03 20:38:03] 2025-06-03 18:27:43,442 | INFO     | chi2: 1.8944120240760576
[2025-06-03 20:38:03] 2025-06-03 18:27:43,442 | INFO     | current chi2=1.8944120240760576 (change=1.0371871298686273 %)
[2025-06-03 20:38:03] 2025-06-03 18:27:43,442 | INFO     | left removable region: 20
[2025-06-03 20:38:03] 2025-06-03 18:27:43,442 | INFO     | sum of square deviations: 2263977332.5
[2025-06-03 20:38:03] 2025-06-03 18:27:43,444 | INFO     | sum of deviations: -26204235460.5
[2025-06-03 20:38:03] 2025-06-03 18:27:43,444 | INFO     | mean x: 1748968618.5
[2025-06-03 20:38:03] 2025-06-03 18:27:43,444 | INFO     | mean y: 2525907.293814433
[2025-06-03 20:38:03] 2025-06-03 18:27:43,444 | INFO     | -- intersect: 20245831718.837048
[2025-06-03 20:38:03] 2025-06-03 18:27:43,445 | INFO     | intersect: 20245831718.837048
[2025-06-03 20:38:03] 2025-06-03 18:27:43,445 | INFO     | chi2: 0.16461117099944034
[2025-06-03 20:38:03] 2025-06-03 18:27:43,445 | INFO     | -- intersect: 20245831718.837048
[2025-06-03 20:38:03] 2025-06-03 18:27:43,445 | INFO     | current memory leak: -11.57 B/s (using 194 data points, chi2=0.16)
[2025-06-03 20:38:03] 2025-06-03 18:27:43,446 | INFO     | ..............................
[2025-06-03 20:38:03] 2025-06-03 18:27:43,446 | INFO     | . Timing measurements:
[2025-06-03 20:38:03] 2025-06-03 18:27:43,446 | INFO     | . get job = 0 s
[2025-06-03 20:38:03] 2025-06-03 18:27:43,446 | INFO     | . initial setup = 2 s
[2025-06-03 20:38:03] 2025-06-03 18:27:43,447 | INFO     | . payload setup = 24 s
[2025-06-03 20:38:03] 2025-06-03 18:27:43,447 | INFO     | . stage-in = 0 s
[2025-06-03 20:38:03] 2025-06-03 18:27:43,447 | INFO     | . payload execution = 13701 s
[2025-06-03 20:38:03] 2025-06-03 18:27:43,447 | INFO     | . stage-out = 3 s
[2025-06-03 20:38:03] 2025-06-03 18:27:43,447 | INFO     | . log creation = 0 s
[2025-06-03 20:38:03] 2025-06-03 18:27:43,447 | INFO     | ..............................
[2025-06-03 20:38:03] 2025-06-03 18:27:43,789 | INFO     | 
[2025-06-03 20:38:03] 2025-06-03 18:27:43,789 | INFO     | job summary report
[2025-06-03 20:38:03] 2025-06-03 18:27:43,789 | INFO     | --------------------------------------------------
[2025-06-03 20:38:03] 2025-06-03 18:27:43,789 | INFO     | PanDA job id: 6677420549
[2025-06-03 20:38:03] 2025-06-03 18:27:43,789 | INFO     | task id: 45006595
[2025-06-03 20:38:03] 2025-06-03 18:27:43,789 | INFO     | errors: (none)
[2025-06-03 20:38:03] 2025-06-03 18:27:43,790 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 20:38:03] 2025-06-03 18:27:43,790 | INFO     | pilot state: finished 
[2025-06-03 20:38:03] 2025-06-03 18:27:43,790 | INFO     | transexitcode: 0
[2025-06-03 20:38:03] 2025-06-03 18:27:43,790 | INFO     | exeerrorcode: 0
[2025-06-03 20:38:03] 2025-06-03 18:27:43,790 | INFO     | exeerrordiag: 
[2025-06-03 20:38:03] 2025-06-03 18:27:43,790 | INFO     | exitcode: 0
[2025-06-03 20:38:03] 2025-06-03 18:27:43,790 | INFO     | exitmsg: OK
[2025-06-03 20:38:03] 2025-06-03 18:27:43,790 | INFO     | cpuconsumptiontime: 50446 s
[2025-06-03 20:38:03] 2025-06-03 18:27:43,790 | INFO     | nevents: 400
[2025-06-03 20:38:03] 2025-06-03 18:27:43,790 | INFO     | neventsw: 0
[2025-06-03 20:38:03] 2025-06-03 18:27:43,790 | INFO     | pid: 10706
[2025-06-03 20:38:03] 2025-06-03 18:27:43,791 | INFO     | pgrp: 10706
[2025-06-03 20:38:03] 2025-06-03 18:27:43,791 | INFO     | corecount: 8
[2025-06-03 20:38:03] 2025-06-03 18:27:43,791 | INFO     | event service: False
[2025-06-03 20:38:03] 2025-06-03 18:27:43,791 | INFO     | sizes: {0: 2404955, 1: 2405210, 2: 2405210, 11: 2405444, 12: 2405472, 13729: 2435254, 13735: 2444195, 13737: 2444251, 13808: 2444421}
[2025-06-03 20:38:03] 2025-06-03 18:27:43,791 | INFO     | --------------------------------------------------
[2025-06-03 20:38:03] 2025-06-03 18:27:43,791 | INFO     | 
[2025-06-03 20:38:03] 2025-06-03 18:27:43,791 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-06-03 20:38:03] 2025-06-03 18:27:44,227 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 20:38:03] 2025-06-03 18:27:44,227 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 20:38:03] 2025-06-03 18:27:44,227 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 20:38:03] 2025-06-03 18:27:44,227 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 20:38:03] 2025-06-03 18:27:44,227 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 20:38:03] 2025-06-03 18:27:44,228 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 20:38:03] 2025-06-03 18:27:44,228 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 20:38:03] 2025-06-03 18:27:44,228 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 20:38:03] 2025-06-03 18:27:44,228 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 20:38:03] 2025-06-03 18:27:44,228 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 20:38:03] 2025-06-03 18:27:44,228 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 20:38:03] 2025-06-03 18:27:44,228 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 20:38:03] 2025-06-03 18:27:44,228 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 20:38:03] 2025-06-03 18:27:44,228 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 20:38:03] 2025-06-03 18:27:44,229 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 20:38:03] 2025-06-03 18:27:44,229 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 20:38:03] 2025-06-03 18:27:44,229 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 20:38:03] 2025-06-03 18:27:44,229 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 20:38:03] 2025-06-03 18:27:44,229 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 20:38:03] 2025-06-03 18:27:44,229 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 20:38:03] 2025-06-03 18:27:44,229 | INFO     | job 6677420549 has completed (purged errors)
[2025-06-03 20:38:03] 2025-06-03 18:27:44,229 | INFO     | overall cleanup function is called
[2025-06-03 20:38:03] 2025-06-03 18:27:45,238 | INFO     | --- collectZombieJob: --- 10, [10706]
[2025-06-03 20:38:03] 2025-06-03 18:27:45,238 | INFO     | zombie collector waiting for pid 10706
[2025-06-03 20:38:03] 2025-06-03 18:27:45,238 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 20:38:03] 2025-06-03 18:27:45,238 | INFO     | collected zombie processes
[2025-06-03 20:38:03] 2025-06-03 18:27:45,238 | INFO     | will attempt to kill all subprocesses of pid=10706
[2025-06-03 20:38:03] 2025-06-03 18:27:45,374 | INFO     | process IDs to be killed: [10706] (in reverse order)
[2025-06-03 20:38:03] 2025-06-03 18:27:46,000 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 20:38:03] 2025-06-03 18:27:46,000 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 20:38:03] 2025-06-03 18:27:46,003 | INFO     | did not find any defunct processes belonging to 10706
[2025-06-03 20:38:03] 2025-06-03 18:27:46,007 | INFO     | did not find any defunct processes belonging to 10706
[2025-06-03 20:38:03] 2025-06-03 18:27:46,007 | INFO     | ready for new job
[2025-06-03 20:38:03] 2025-06-03 18:27:46,007 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 20:38:03] 2025-06-03 18:27:46,009 | INFO     | **************************************
[2025-06-03 20:38:03] 2025-06-03 18:27:46,009 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 20:38:03] 2025-06-03 18:27:46,010 | INFO     | **************************************
[2025-06-03 20:38:03] 2025-06-03 18:27:46,010 | INFO     | 
[2025-06-03 20:38:03] 2025-06-03 18:27:46,010 | INFO     | pilot is running in a VM
[2025-06-03 20:38:03] 2025-06-03 18:27:46,010 | INFO     | architecture information:
[2025-06-03 20:38:03] 2025-06-03 18:27:46,028 | INFO     | executing command: cat /etc/os-release
[2025-06-03 20:38:03] 2025-06-03 18:27:46,298 | INFO     | cat /etc/os-release:
[2025-06-03 20:38:03] NAME="CentOS Linux"
[2025-06-03 20:38:03] VERSION="7 (Core)"
[2025-06-03 20:38:03] ID="centos"
[2025-06-03 20:38:03] ID_LIKE="rhel fedora"
[2025-06-03 20:38:03] VERSION_ID="7"
[2025-06-03 20:38:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 20:38:03] ANSI_COLOR="0;31"
[2025-06-03 20:38:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 20:38:03] HOME_URL="https://www.centos.org/"
[2025-06-03 20:38:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 20:38:03] 
[2025-06-03 20:38:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 20:38:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 20:38:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 20:38:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 20:38:03] 
[2025-06-03 20:38:03] 2025-06-03 18:27:46,299 | INFO     | **************************************
[2025-06-03 20:38:03] 2025-06-03 18:27:46,802 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-06-03 20:38:03] 2025-06-03 18:27:46,975 | INFO     | sufficient remaining disk space (496921214976 B)
[2025-06-03 20:38:03] 2025-06-03 18:27:46,975 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 20:38:03] 2025-06-03 18:27:46,975 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 20:38:03] 2025-06-03 18:27:46,975 | INFO     | update_server=False
[2025-06-03 20:38:03] 2025-06-03 18:27:46,976 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 20:38:03] 2025-06-03 18:27:46,976 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 20:38:03] 2025-06-03 18:27:46,976 | INFO     | aborting loop
[2025-06-03 20:38:03] 2025-06-03 18:27:47,030 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 20:38:03] 2025-06-03 18:27:47,030 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 20:38:03] 2025-06-03 18:27:47,030 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 20:38:03] 2025-06-03 18:27:47,092 | INFO     | all data control threads have been joined
[2025-06-03 20:38:03] 2025-06-03 18:27:47,471 | INFO     | all job control threads have been joined
[2025-06-03 20:38:03] 2025-06-03 18:27:47,982 | INFO     | [job] retrieve thread has finished
[2025-06-03 20:38:03] 2025-06-03 18:27:47,983 | INFO     | [job] job monitor thread has finished
[2025-06-03 20:38:03] 2025-06-03 18:27:48,086 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 20:38:03] 2025-06-03 18:27:48,098 | INFO     | [data] control thread has finished
[2025-06-03 20:38:03] 2025-06-03 18:27:48,125 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 20:38:03] 2025-06-03 18:27:48,365 | INFO     | all payload control threads have been joined
[2025-06-03 20:38:03] 2025-06-03 18:27:48,401 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 20:38:03] 2025-06-03 18:27:48,478 | INFO     | [job] control thread has finished
[2025-06-03 20:38:03] 2025-06-03 18:27:48,612 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 20:38:03] 2025-06-03 18:27:48,832 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 20:38:03] 2025-06-03 18:27:48,887 | INFO     | [payload] failed_post thread has finished
[2025-06-03 20:38:03] 2025-06-03 18:27:49,186 | INFO     | [job] validate thread has finished
[2025-06-03 20:38:03] 2025-06-03 18:27:49,192 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 20:38:03] 2025-06-03 18:27:49,281 | INFO     | [payload] validate_post thread has finished
[2025-06-03 20:38:03] 2025-06-03 18:27:49,332 | INFO     | [data] copytool_in thread has finished
[2025-06-03 20:38:03] 2025-06-03 18:27:49,371 | INFO     | [payload] control thread has finished
[2025-06-03 20:38:03] 2025-06-03 18:27:49,618 | INFO     | [job] queue monitor thread has finished
[2025-06-03 20:38:03] 2025-06-03 18:27:50,133 | INFO     | [data] copytool_out thread has finished
[2025-06-03 20:38:03] 2025-06-03 18:27:50,170 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 20:38:03] 2025-06-03 18:27:54,179 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 20:38:03] 2025-06-03 18:27:55,087 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140517241349952)>', '<ExcThread(monitor, started 140516498863872)>']
[2025-06-03 20:38:03] 2025-06-03 18:27:56,083 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 20:38:03] 2025-06-03 18:27:56,083 | INFO     | [monitor] control thread has ended
[2025-06-03 20:38:03] 2025-06-03 18:28:00,113 | INFO     | all workflow threads have been joined
[2025-06-03 20:38:03] 2025-06-03 18:28:00,113 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 20:38:03] 2025-06-03 18:28:00,113 | INFO     | traces error code: 0
[2025-06-03 20:38:03] 2025-06-03 18:28:00,114 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 20:38:03] 2025-06-03 18:28:00,417 [wrapper] ==== pilot stdout END ====
[2025-06-03 20:38:03] 2025-06-03 18:28:00,471 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 20:38:03] 2025-06-03 18:28:00,534 [wrapper] pilotpid: 32571
[2025-06-03 20:38:03] 2025-06-03 18:28:00,553 [wrapper] Pilot exit status: 0
[2025-06-03 20:38:03] 2025-06-03 18:28:00,704 [wrapper] pandaids: 6677420549
[2025-06-03 20:38:03] 2025-06-03 18:28:00,866 [wrapper] cleanup supervisor_pilot  2316 32572
[2025-06-03 20:38:03] 2025-06-03 18:28:00,887 [wrapper] Test setup, not cleaning
[2025-06-03 20:38:03] 2025-06-03 18:28:00,905 [wrapper] apfmon messages muted
[2025-06-03 20:38:03] 2025-06-03 18:28:00,925 [wrapper] ==== wrapper stdout END ====
[2025-06-03 20:38:03] 2025-06-03 18:28:00,945 [wrapper] ==== wrapper stderr END ====
[2025-06-03 20:38:03]  *** Error codes and diagnostics ***
[2025-06-03 20:38:03]     "exeErrorCode": 0,
[2025-06-03 20:38:03]     "exeErrorDiag": "",
[2025-06-03 20:38:03]     "pilotErrorCode": 0,
[2025-06-03 20:38:03]     "pilotErrorDiag": "",
[2025-06-03 20:38:03]  *** Listing of results directory ***
[2025-06-03 20:38:03] total 394364
[2025-06-03 20:38:03] -rw-r--r--. 1 boinc boinc    495897 Jun  3 01:50 pilot3.tar.gz
[2025-06-03 20:38:03] -rw-r--r--. 1 boinc boinc      5111 Jun  3 02:12 queuedata.json
[2025-06-03 20:38:03] -rwx------. 1 boinc boinc     37140 Jun  3 02:13 runpilot2-wrapper.sh
[2025-06-03 20:38:03] -rw-r--r--. 1 boinc boinc       100 Jun  3 16:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 20:38:03] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 16:36 run_atlas
[2025-06-03 20:38:03] -rw-r--r--. 1 boinc boinc       105 Jun  3 16:36 job.xml
[2025-06-03 20:38:03] -rw-r--r--. 2 boinc boinc 215364592 Jun  3 16:36 EVNT.45006593._000594.pool.root.1
[2025-06-03 20:38:03] -rw-r--r--. 2 boinc boinc     15093 Jun  3 16:36 start_atlas.sh
[2025-06-03 20:38:03] drwxrwx--x. 2 boinc boinc        68 Jun  3 16:36 shared
[2025-06-03 20:38:03] -rw-r--r--. 2 boinc boinc    508881 Jun  3 16:36 input.tar.gz
[2025-06-03 20:38:03] -rw-r--r--. 1 boinc boinc      6392 Jun  3 16:36 init_data.xml
[2025-06-03 20:38:03] -rw-r--r--. 1 boinc boinc         0 Jun  3 16:36 boinc_lockfile
[2025-06-03 20:38:03] -rw-r--r--. 1 boinc boinc      2524 Jun  3 16:36 pandaJob.out
[2025-06-03 20:38:03] -rw-------. 1 boinc boinc    982724 Jun  3 16:37 agis_schedconf.cvmfs.json
[2025-06-03 20:38:03] drwx------. 4 boinc boinc      4096 Jun  3 16:37 pilot3
[2025-06-03 20:38:03] -rw-------. 1 boinc boinc 181489282 Jun  3 20:25 HITS.45006595._014842.pool.root.1
[2025-06-03 20:38:03] -rw-r--r--. 1 boinc boinc       530 Jun  3 20:25 boinc_task_state.xml
[2025-06-03 20:38:03] -rw-------. 1 boinc boinc      1018 Jun  3 20:26 memory_monitor_summary.json
[2025-06-03 20:38:03] -rw-------. 1 boinc boinc   1603667 Jun  3 20:26 agis_ddmendpoints.agis.ALL.json
[2025-06-03 20:38:03] -rw-------. 1 boinc boinc    385943 Jun  3 20:26 log.45006595._014842.job.log.tgz.1
[2025-06-03 20:38:03] -rw-------. 1 boinc boinc        95 Jun  3 20:26 pilot_heartbeat.json
[2025-06-03 20:38:03] -rw-------. 1 boinc boinc      7690 Jun  3 20:27 heartbeat.json
[2025-06-03 20:38:03] -rw-------. 1 boinc boinc      4416 Jun  3 20:28 pilotlog.txt
[2025-06-03 20:38:03] -rw-------. 1 boinc boinc   1192362 Jun  3 20:28 log.45006595._014842.job.log.1
[2025-06-03 20:38:03] -rw-------. 1 boinc boinc       357 Jun  3 20:28 output.list
[2025-06-03 20:38:03] -rw-r--r--. 1 boinc boinc       620 Jun  3 20:28 runtime_log
[2025-06-03 20:38:03] -rw-------. 1 boinc boinc   1597440 Jun  3 20:28 result.tar.gz
[2025-06-03 20:38:03] -rw-r--r--. 1 boinc boinc      8659 Jun  3 20:28 runtime_log.err
[2025-06-03 20:38:03] -rw-------. 1 boinc boinc       656 Jun  3 20:28 hDGODmsSUg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmODhKDmGwVWwm.diag
[2025-06-03 20:38:03] -rw-r--r--. 1 boinc boinc      8192 Jun  3 20:38 boinc_mmap_file
[2025-06-03 20:38:03] -rw-r--r--. 1 boinc boinc        28 Jun  3 20:38 wrapper_checkpoint.txt
[2025-06-03 20:38:03] -rw-r--r--. 1 boinc boinc     20497 Jun  3 20:38 stderr.txt
[2025-06-03 20:38:03] HITS file was successfully produced:
[2025-06-03 20:38:03] -rw-------. 1 boinc boinc 181489282 Jun  3 20:25 shared/HITS.pool.root.1
[2025-06-03 20:38:03]  *** Contents of shared directory: ***
[2025-06-03 20:38:03] total 389632
[2025-06-03 20:38:03] -rw-r--r--. 2 boinc boinc 215364592 Jun  3 16:36 ATLAS.root_0
[2025-06-03 20:38:03] -rw-r--r--. 2 boinc boinc     15093 Jun  3 16:36 start_atlas.sh
[2025-06-03 20:38:03] -rw-r--r--. 2 boinc boinc    508881 Jun  3 16:36 input.tar.gz
[2025-06-03 20:38:03] -rw-------. 1 boinc boinc 181489282 Jun  3 20:25 HITS.pool.root.1
[2025-06-03 20:38:03] -rw-------. 1 boinc boinc   1597440 Jun  3 20:28 result.tar.gz
20:38:05 (28890): run_atlas exited; CPU time 50617.555756
20:38:05 (28890): called boinc_finish(0)

</stderr_txt>
]]>

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