Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:45:28 (32729): wrapper (7.7.26015): starting
14:45:28 (32729): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 14:45:28] Arguments: --nthreads 8
[2025-06-03 14:45:28] Threads: 8
[2025-06-03 14:45:28] Checking for CVMFS
[2025-06-03 14:45:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 14:45:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 14:45:28] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 14:45:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 14:45:29] 2.11.2.0 17879 31807 90120 146741 1 114 14740557 25165825 4098 130560 0 16854454 99.857 16968387 2003 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 14:45:29] CVMFS is ok
[2025-06-03 14:45:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 14:45:29] Checking for apptainer binary...
[2025-06-03 14:45:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 14:45:29] Running /usr/bin/apptainer --version
[2025-06-03 14:45:29] apptainer version 1.3.2-1.el7
[2025-06-03 14:45:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 14:45:30] cg-vwn476.simple-grid.lan
[2025-06-03 14:45:30] apptainer works
[2025-06-03 14:45:30] Set ATHENA_PROC_NUMBER=8
[2025-06-03 14:45:30] Set ATHENA_CORE_NUMBER=8
[2025-06-03 14:45:30] Starting ATLAS job with PandaID=6677443862
[2025-06-03 14:45:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 19:52:18]  *** The last 200 lines of the pilot log: ***
[2025-06-03 19:52:18] 2025-06-03 16:10:44,464 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 19:52:18] 2025-06-03 16:10:44,465 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 19:52:18] 2025-06-03 16:10:44,475 | INFO     | fitting pss+swap vs Time
[2025-06-03 19:52:18] 2025-06-03 16:10:44,476 | INFO     | sum of square deviations: 2443580700.0
[2025-06-03 19:52:18] 2025-06-03 16:10:44,477 | INFO     | sum of deviations: -17027740201.999998
[2025-06-03 19:52:18] 2025-06-03 16:10:44,477 | INFO     | mean x: 1748960849.0
[2025-06-03 19:52:18] 2025-06-03 16:10:44,477 | INFO     | mean y: 2495177.824120603
[2025-06-03 19:52:18] 2025-06-03 16:10:44,477 | INFO     | -- intersect: 12189876982.010637
[2025-06-03 19:52:18] 2025-06-03 16:10:44,478 | INFO     | intersect: 12189876982.010637
[2025-06-03 19:52:18] 2025-06-03 16:10:44,478 | INFO     | chi2: 2.52743939080327
[2025-06-03 19:52:18] 2025-06-03 16:10:44,478 | INFO     | sum of square deviations: 2263977332.5
[2025-06-03 19:52:18] 2025-06-03 16:10:44,480 | INFO     | sum of deviations: -3355653767.499997
[2025-06-03 19:52:18] 2025-06-03 16:10:44,480 | INFO     | mean x: 1748960696.5
[2025-06-03 19:52:18] 2025-06-03 16:10:44,480 | INFO     | mean y: 2506560.087628866
[2025-06-03 19:52:18] 2025-06-03 16:10:44,480 | INFO     | -- intersect: 2594805725.8831167
[2025-06-03 19:52:18] 2025-06-03 16:10:44,480 | INFO     | intersect: 2594805725.8831167
[2025-06-03 19:52:18] 2025-06-03 16:10:44,481 | INFO     | chi2: 1.7592252382870388
[2025-06-03 19:52:18] 2025-06-03 16:10:44,481 | INFO     | current chi2=1.7592252382870388 (change=30.39495844337844 %)
[2025-06-03 19:52:18] 2025-06-03 16:10:44,481 | INFO     | sum of square deviations: 2093397390.0
[2025-06-03 19:52:18] 2025-06-03 16:10:44,482 | INFO     | sum of deviations: -3024145272.000003
[2025-06-03 19:52:18] 2025-06-03 16:10:44,483 | INFO     | mean x: 1748960544.0
[2025-06-03 19:52:18] 2025-06-03 16:10:44,483 | INFO     | mean y: 2506856.5396825396
[2025-06-03 19:52:18] 2025-06-03 16:10:44,483 | INFO     | -- intersect: 2529074810.2964954
[2025-06-03 19:52:18] 2025-06-03 16:10:44,483 | INFO     | intersect: 2529074810.2964954
[2025-06-03 19:52:18] 2025-06-03 16:10:44,483 | INFO     | chi2: 1.7594068814753974
[2025-06-03 19:52:18] 2025-06-03 16:10:44,483 | INFO     | current chi2=1.7594068814753974 (change=-0.010325180903806633 %)
[2025-06-03 19:52:18] 2025-06-03 16:10:44,483 | INFO     | right removable region: 188
[2025-06-03 19:52:18] 2025-06-03 16:10:44,484 | INFO     | sum of square deviations: 2263977332.5
[2025-06-03 19:52:18] 2025-06-03 16:10:44,485 | INFO     | sum of deviations: -48839616358.49999
[2025-06-03 19:52:18] 2025-06-03 16:10:44,485 | INFO     | mean x: 1748961001.5
[2025-06-03 19:52:18] 2025-06-03 16:10:44,485 | INFO     | mean y: 2521899.2525773197
[2025-06-03 19:52:18] 2025-06-03 16:10:44,485 | INFO     | -- intersect: 37731956338.8255
[2025-06-03 19:52:18] 2025-06-03 16:10:44,486 | INFO     | intersect: 37731956338.8255
[2025-06-03 19:52:18] 2025-06-03 16:10:44,486 | INFO     | chi2: 0.9928013670135314
[2025-06-03 19:52:18] 2025-06-03 16:10:44,486 | INFO     | current chi2=0.9928013670135314 (change=60.71908309152373 %)
[2025-06-03 19:52:18] 2025-06-03 16:10:44,486 | INFO     | sum of square deviations: 2093397390.0
[2025-06-03 19:52:18] 2025-06-03 16:10:44,488 | INFO     | sum of deviations: -50217003160.000015
[2025-06-03 19:52:18] 2025-06-03 16:10:44,488 | INFO     | mean x: 1748961154.0
[2025-06-03 19:52:18] 2025-06-03 16:10:44,488 | INFO     | mean y: 2523100.492063492
[2025-06-03 19:52:18] 2025-06-03 16:10:44,488 | INFO     | -- intersect: 41957093320.49949
[2025-06-03 19:52:18] 2025-06-03 16:10:44,488 | INFO     | intersect: 41957093320.49949
[2025-06-03 19:52:18] 2025-06-03 16:10:44,488 | INFO     | chi2: 0.9665148731088727
[2025-06-03 19:52:18] 2025-06-03 16:10:44,488 | INFO     | current chi2=0.9665148731088727 (change=2.6477092778116993 %)
[2025-06-03 19:52:18] 2025-06-03 16:10:44,489 | INFO     | left removable region: 20
[2025-06-03 19:52:18] 2025-06-03 16:10:44,489 | INFO     | sum of square deviations: 1470248962.0
[2025-06-03 19:52:18] 2025-06-03 16:10:44,490 | INFO     | sum of deviations: -24219436035.0
[2025-06-03 19:52:18] 2025-06-03 16:10:44,490 | INFO     | mean x: 1748961123.5
[2025-06-03 19:52:18] 2025-06-03 16:10:44,490 | INFO     | mean y: 2525315.8571428573
[2025-06-03 19:52:18] 2025-06-03 16:10:44,491 | INFO     | -- intersect: 28813191504.45193
[2025-06-03 19:52:18] 2025-06-03 16:10:44,491 | INFO     | intersect: 28813191504.45193
[2025-06-03 19:52:18] 2025-06-03 16:10:44,491 | INFO     | chi2: 0.14889160896044196
[2025-06-03 19:52:18] 2025-06-03 16:10:44,491 | INFO     | -- intersect: 28813191504.45193
[2025-06-03 19:52:18] 2025-06-03 16:10:44,491 | INFO     | current memory leak: -16.47 B/s (using 168 data points, chi2=0.15)
[2025-06-03 19:52:18] 2025-06-03 16:10:44,492 | INFO     | ..............................
[2025-06-03 19:52:18] 2025-06-03 16:10:44,492 | INFO     | . Timing measurements:
[2025-06-03 19:52:18] 2025-06-03 16:10:44,492 | INFO     | . get job = 0 s
[2025-06-03 19:52:18] 2025-06-03 16:10:44,492 | INFO     | . initial setup = 2 s
[2025-06-03 19:52:18] 2025-06-03 16:10:44,492 | INFO     | . payload setup = 17 s
[2025-06-03 19:52:18] 2025-06-03 16:10:44,493 | INFO     | . stage-in = 0 s
[2025-06-03 19:52:18] 2025-06-03 16:10:44,493 | INFO     | . payload execution = 12152 s
[2025-06-03 19:52:18] 2025-06-03 16:10:44,493 | INFO     | . stage-out = 3 s
[2025-06-03 19:52:18] 2025-06-03 16:10:44,493 | INFO     | . log creation = 1 s
[2025-06-03 19:52:18] 2025-06-03 16:10:44,493 | INFO     | ..............................
[2025-06-03 19:52:18] 2025-06-03 16:10:44,531 | INFO     | 12297s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-03 19:52:18] 2025-06-03 16:10:44,637 | INFO     | 
[2025-06-03 19:52:18] 2025-06-03 16:10:44,637 | INFO     | job summary report
[2025-06-03 19:52:18] 2025-06-03 16:10:44,638 | INFO     | --------------------------------------------------
[2025-06-03 19:52:18] 2025-06-03 16:10:44,638 | INFO     | PanDA job id: 6677443862
[2025-06-03 19:52:18] 2025-06-03 16:10:44,638 | INFO     | task id: 45006595
[2025-06-03 19:52:18] 2025-06-03 16:10:44,638 | INFO     | errors: (none)
[2025-06-03 19:52:18] 2025-06-03 16:10:44,638 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 19:52:18] 2025-06-03 16:10:44,638 | INFO     | pilot state: finished 
[2025-06-03 19:52:18] 2025-06-03 16:10:44,638 | INFO     | transexitcode: 0
[2025-06-03 19:52:18] 2025-06-03 16:10:44,638 | INFO     | exeerrorcode: 0
[2025-06-03 19:52:18] 2025-06-03 16:10:44,638 | INFO     | exeerrordiag: 
[2025-06-03 19:52:18] 2025-06-03 16:10:44,638 | INFO     | exitcode: 0
[2025-06-03 19:52:18] 2025-06-03 16:10:44,639 | INFO     | exitmsg: OK
[2025-06-03 19:52:18] 2025-06-03 16:10:44,639 | INFO     | cpuconsumptiontime: 46052 s
[2025-06-03 19:52:18] 2025-06-03 16:10:44,639 | INFO     | nevents: 400
[2025-06-03 19:52:18] 2025-06-03 16:10:44,639 | INFO     | neventsw: 0
[2025-06-03 19:52:18] 2025-06-03 16:10:44,639 | INFO     | pid: 12526
[2025-06-03 19:52:18] 2025-06-03 16:10:44,639 | INFO     | pgrp: 12526
[2025-06-03 19:52:18] 2025-06-03 16:10:44,639 | INFO     | corecount: 8
[2025-06-03 19:52:18] 2025-06-03 16:10:44,639 | INFO     | event service: False
[2025-06-03 19:52:18] 2025-06-03 16:10:44,639 | INFO     | sizes: {0: 2404354, 1: 2405210, 10: 2405416, 12: 2405444, 12173: 2434394, 12177: 2443335, 12179: 2443519, 12275: 2443689}
[2025-06-03 19:52:18] 2025-06-03 16:10:44,639 | INFO     | --------------------------------------------------
[2025-06-03 19:52:18] 2025-06-03 16:10:44,639 | INFO     | 
[2025-06-03 19:52:18] 2025-06-03 16:10:44,640 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-03 19:52:18] 2025-06-03 16:10:45,244 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 19:52:18] 2025-06-03 16:10:45,244 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 19:52:18] 2025-06-03 16:10:45,244 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 19:52:18] 2025-06-03 16:10:45,244 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 19:52:18] 2025-06-03 16:10:45,244 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 19:52:18] 2025-06-03 16:10:45,244 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 19:52:18] 2025-06-03 16:10:45,245 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 19:52:18] 2025-06-03 16:10:45,245 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 19:52:18] 2025-06-03 16:10:45,245 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 19:52:18] 2025-06-03 16:10:45,245 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 19:52:18] 2025-06-03 16:10:45,245 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 19:52:18] 2025-06-03 16:10:45,245 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 19:52:18] 2025-06-03 16:10:45,245 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 19:52:18] 2025-06-03 16:10:45,245 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 19:52:18] 2025-06-03 16:10:45,245 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 19:52:18] 2025-06-03 16:10:45,245 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 19:52:18] 2025-06-03 16:10:45,245 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 19:52:18] 2025-06-03 16:10:45,246 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 19:52:18] 2025-06-03 16:10:45,246 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 19:52:18] 2025-06-03 16:10:45,246 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 19:52:18] 2025-06-03 16:10:45,246 | INFO     | job 6677443862 has completed (purged errors)
[2025-06-03 19:52:18] 2025-06-03 16:10:45,246 | INFO     | overall cleanup function is called
[2025-06-03 19:52:18] 2025-06-03 16:10:46,253 | INFO     | --- collectZombieJob: --- 10, [12526]
[2025-06-03 19:52:18] 2025-06-03 16:10:46,253 | INFO     | zombie collector waiting for pid 12526
[2025-06-03 19:52:18] 2025-06-03 16:10:46,254 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 19:52:18] 2025-06-03 16:10:46,254 | INFO     | collected zombie processes
[2025-06-03 19:52:18] 2025-06-03 16:10:46,254 | INFO     | will attempt to kill all subprocesses of pid=12526
[2025-06-03 19:52:18] 2025-06-03 16:10:46,367 | INFO     | process IDs to be killed: [12526] (in reverse order)
[2025-06-03 19:52:18] 2025-06-03 16:10:47,177 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 19:52:18] 2025-06-03 16:10:47,178 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 19:52:18] 2025-06-03 16:10:47,181 | INFO     | did not find any defunct processes belonging to 12526
[2025-06-03 19:52:18] 2025-06-03 16:10:47,187 | INFO     | did not find any defunct processes belonging to 12526
[2025-06-03 19:52:18] 2025-06-03 16:10:47,187 | INFO     | ready for new job
[2025-06-03 19:52:18] 2025-06-03 16:10:47,188 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 19:52:18] 2025-06-03 16:10:47,189 | INFO     | **************************************
[2025-06-03 19:52:18] 2025-06-03 16:10:47,189 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 19:52:18] 2025-06-03 16:10:47,190 | INFO     | **************************************
[2025-06-03 19:52:18] 2025-06-03 16:10:47,190 | INFO     | 
[2025-06-03 19:52:18] 2025-06-03 16:10:47,190 | INFO     | pilot is running in a VM
[2025-06-03 19:52:18] 2025-06-03 16:10:47,190 | INFO     | architecture information:
[2025-06-03 19:52:18] 2025-06-03 16:10:47,201 | INFO     | executing command: cat /etc/os-release
[2025-06-03 19:52:18] 2025-06-03 16:10:47,489 | INFO     | cat /etc/os-release:
[2025-06-03 19:52:18] NAME="CentOS Linux"
[2025-06-03 19:52:18] VERSION="7 (Core)"
[2025-06-03 19:52:18] ID="centos"
[2025-06-03 19:52:18] ID_LIKE="rhel fedora"
[2025-06-03 19:52:18] VERSION_ID="7"
[2025-06-03 19:52:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 19:52:18] ANSI_COLOR="0;31"
[2025-06-03 19:52:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 19:52:18] HOME_URL="https://www.centos.org/"
[2025-06-03 19:52:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 19:52:18] 
[2025-06-03 19:52:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 19:52:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 19:52:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 19:52:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 19:52:18] 
[2025-06-03 19:52:18] 2025-06-03 16:10:47,489 | INFO     | **************************************
[2025-06-03 19:52:18] 2025-06-03 16:10:47,992 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-03 19:52:18] 2025-06-03 16:10:48,279 | INFO     | sufficient remaining disk space (496677945344 B)
[2025-06-03 19:52:18] 2025-06-03 16:10:48,279 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 19:52:18] 2025-06-03 16:10:48,279 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 19:52:18] 2025-06-03 16:10:48,279 | INFO     | update_server=False
[2025-06-03 19:52:18] 2025-06-03 16:10:48,280 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 19:52:18] 2025-06-03 16:10:48,280 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 19:52:18] 2025-06-03 16:10:48,286 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 19:52:18] 2025-06-03 16:10:48,287 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 19:52:18] 2025-06-03 16:10:48,287 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 19:52:18] 2025-06-03 16:10:48,287 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 19:52:18] 2025-06-03 16:10:48,749 | INFO     | all data control threads have been joined
[2025-06-03 19:52:18] 2025-06-03 16:10:48,766 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-03 19:52:18] 2025-06-03 16:10:48,766 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-03 19:52:18] 2025-06-03 16:10:48,767 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 19:52:18] 2025-06-03 16:10:48,767 | INFO     | will abort loop
[2025-06-03 19:52:18] 2025-06-03 16:10:48,939 | INFO     | all job control threads have been joined
[2025-06-03 19:52:18] 2025-06-03 16:10:49,285 | INFO     | [job] retrieve thread has finished
[2025-06-03 19:52:18] 2025-06-03 16:10:49,505 | INFO     | all payload control threads have been joined
[2025-06-03 19:52:18] 2025-06-03 16:10:49,625 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 19:52:18] 2025-06-03 16:10:49,657 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 19:52:18] 2025-06-03 16:10:49,661 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 19:52:18] 2025-06-03 16:10:49,754 | INFO     | [data] control thread has finished
[2025-06-03 19:52:18] 2025-06-03 16:10:49,771 | INFO     | [job] job monitor thread has finished
[2025-06-03 19:52:18] 2025-06-03 16:10:49,884 | INFO     | [data] copytool_in thread has finished
[2025-06-03 19:52:18] 2025-06-03 16:10:49,945 | INFO     | [job] control thread has finished
[2025-06-03 19:52:18] 2025-06-03 16:10:49,950 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 19:52:18] 2025-06-03 16:10:49,980 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 19:52:18] 2025-06-03 16:10:50,164 | INFO     | [payload] validate_post thread has finished
[2025-06-03 19:52:18] 2025-06-03 16:10:50,286 | INFO     | [data] copytool_out thread has finished
[2025-06-03 19:52:18] 2025-06-03 16:10:50,511 | INFO     | [payload] control thread has finished
[2025-06-03 19:52:18] 2025-06-03 16:10:50,546 | INFO     | [job] validate thread has finished
[2025-06-03 19:52:18] 2025-06-03 16:10:50,663 | INFO     | [job] queue monitor thread has finished
[2025-06-03 19:52:18] 2025-06-03 16:10:50,693 | INFO     | [payload] failed_post thread has finished
[2025-06-03 19:52:18] 2025-06-03 16:10:50,724 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 19:52:18] 2025-06-03 16:10:53,990 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 19:52:18] 2025-06-03 16:10:55,844 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140455509337920)>', '<ExcThread(monitor, started 140454918072064)>']
[2025-06-03 19:52:18] 2025-06-03 16:10:56,334 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 19:52:18] 2025-06-03 16:10:56,334 | INFO     | [monitor] control thread has ended
[2025-06-03 19:52:18] 2025-06-03 16:11:00,870 | INFO     | all workflow threads have been joined
[2025-06-03 19:52:18] 2025-06-03 16:11:00,870 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 19:52:18] 2025-06-03 16:11:00,871 | INFO     | traces error code: 0
[2025-06-03 19:52:18] 2025-06-03 16:11:00,871 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 19:52:18] 2025-06-03 16:11:01,300 [wrapper] ==== pilot stdout END ====
[2025-06-03 19:52:18] 2025-06-03 16:11:01,425 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 19:52:18] 2025-06-03 16:11:01,560 [wrapper] pilotpid: 4013
[2025-06-03 19:52:18] 2025-06-03 16:11:01,649 [wrapper] Pilot exit status: 0
[2025-06-03 19:52:18] 2025-06-03 16:11:01,984 [wrapper] pandaids: 6677443862
[2025-06-03 19:52:18] 2025-06-03 16:11:02,999 [wrapper] cleanup supervisor_pilot 26897 4014
[2025-06-03 19:52:18] 2025-06-03 16:11:03,025 [wrapper] Test setup, not cleaning
[2025-06-03 19:52:18] 2025-06-03 16:11:03,105 [wrapper] apfmon messages muted
[2025-06-03 19:52:18] 2025-06-03 16:11:03,204 [wrapper] ==== wrapper stdout END ====
[2025-06-03 19:52:18] 2025-06-03 16:11:03,309 [wrapper] ==== wrapper stderr END ====
[2025-06-03 19:52:18]  *** Error codes and diagnostics ***
[2025-06-03 19:52:18]     "exeErrorCode": 0,
[2025-06-03 19:52:18]     "exeErrorDiag": "",
[2025-06-03 19:52:18]     "pilotErrorCode": 0,
[2025-06-03 19:52:18]     "pilotErrorDiag": "",
[2025-06-03 19:52:18]  *** Listing of results directory ***
[2025-06-03 19:52:18] total 394348
[2025-06-03 19:52:18] -rw-r--r--. 1 boinc boinc    495897 Jun  3 04:22 pilot3.tar.gz
[2025-06-03 19:52:18] -rw-r--r--. 1 boinc boinc      5111 Jun  3 04:26 queuedata.json
[2025-06-03 19:52:18] -rwx------. 1 boinc boinc     37140 Jun  3 04:26 runpilot2-wrapper.sh
[2025-06-03 19:52:18] -rw-r--r--. 1 boinc boinc       100 Jun  3 14:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 19:52:18] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 14:45 run_atlas
[2025-06-03 19:52:18] -rw-r--r--. 1 boinc boinc       105 Jun  3 14:45 job.xml
[2025-06-03 19:52:18] -rw-r--r--. 2 boinc boinc 216849653 Jun  3 14:45 EVNT.45006593._000692.pool.root.1
[2025-06-03 19:52:18] -rw-r--r--. 1 boinc boinc      6391 Jun  3 14:45 init_data.xml
[2025-06-03 19:52:18] -rw-r--r--. 2 boinc boinc     15093 Jun  3 14:45 start_atlas.sh
[2025-06-03 19:52:18] drwxrwx--x. 2 boinc boinc        68 Jun  3 14:45 shared
[2025-06-03 19:52:18] -rw-r--r--. 2 boinc boinc    508875 Jun  3 14:45 input.tar.gz
[2025-06-03 19:52:18] -rw-r--r--. 1 boinc boinc         0 Jun  3 14:45 boinc_lockfile
[2025-06-03 19:52:18] -rw-r--r--. 1 boinc boinc      2524 Jun  3 14:45 pandaJob.out
[2025-06-03 19:52:18] -rw-------. 1 boinc boinc    982666 Jun  3 14:45 agis_schedconf.cvmfs.json
[2025-06-03 19:52:18] drwx------. 4 boinc boinc      4096 Jun  3 14:45 pilot3
[2025-06-03 19:52:18] -rw-------. 1 boinc boinc 180286510 Jun  3 18:07 HITS.45006595._017283.pool.root.1
[2025-06-03 19:52:18] -rw-r--r--. 1 boinc boinc       531 Jun  3 18:07 boinc_task_state.xml
[2025-06-03 19:52:18] -rw-------. 1 boinc boinc      1016 Jun  3 18:08 memory_monitor_summary.json
[2025-06-03 19:52:18] -rw-------. 1 boinc boinc   1603667 Jun  3 18:09 agis_ddmendpoints.agis.ALL.json
[2025-06-03 19:52:18] -rw-------. 1 boinc boinc    359412 Jun  3 18:09 log.45006595._017283.job.log.tgz.1
[2025-06-03 19:52:18] -rw-------. 1 boinc boinc        95 Jun  3 18:10 pilot_heartbeat.json
[2025-06-03 19:52:18] -rw-------. 1 boinc boinc      7686 Jun  3 18:10 heartbeat.json
[2025-06-03 19:52:18] -rw-------. 1 boinc boinc      4725 Jun  3 18:11 pilotlog.txt
[2025-06-03 19:52:18] -rw-------. 1 boinc boinc   1071000 Jun  3 18:11 log.45006595._017283.job.log.1
[2025-06-03 19:52:18] -rw-------. 1 boinc boinc       357 Jun  3 18:11 output.list
[2025-06-03 19:52:18] -rw-r--r--. 1 boinc boinc       620 Jun  3 18:11 runtime_log
[2025-06-03 19:52:18] -rw-------. 1 boinc boinc   1454080 Jun  3 18:11 result.tar.gz
[2025-06-03 19:52:18] -rw-------. 1 boinc boinc       656 Jun  3 18:11 ryiNDmfXWg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmWahKDmGEsNKo.diag
[2025-06-03 19:52:18] -rw-r--r--. 1 boinc boinc      8659 Jun  3 18:11 runtime_log.err
[2025-06-03 19:52:18] -rw-r--r--. 1 boinc boinc      8192 Jun  3 19:52 boinc_mmap_file
[2025-06-03 19:52:18] -rw-r--r--. 1 boinc boinc        28 Jun  3 19:52 wrapper_checkpoint.txt
[2025-06-03 19:52:18] -rw-r--r--. 1 boinc boinc     20477 Jun  3 19:52 stderr.txt
[2025-06-03 19:52:19] HITS file was successfully produced:
[2025-06-03 19:52:19] -rw-------. 1 boinc boinc 180286510 Jun  3 18:07 shared/HITS.pool.root.1
[2025-06-03 19:52:19]  *** Contents of shared directory: ***
[2025-06-03 19:52:19] total 389768
[2025-06-03 19:52:19] -rw-r--r--. 2 boinc boinc 216849653 Jun  3 14:45 ATLAS.root_0
[2025-06-03 19:52:19] -rw-r--r--. 2 boinc boinc     15093 Jun  3 14:45 start_atlas.sh
[2025-06-03 19:52:19] -rw-r--r--. 2 boinc boinc    508875 Jun  3 14:45 input.tar.gz
[2025-06-03 19:52:19] -rw-------. 1 boinc boinc 180286510 Jun  3 18:07 HITS.pool.root.1
[2025-06-03 19:52:19] -rw-------. 1 boinc boinc   1454080 Jun  3 18:11 result.tar.gz
19:52:20 (32729): run_atlas exited; CPU time 46188.215827
19:52:20 (32729): called boinc_finish(0)

</stderr_txt>
]]>

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