Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:24:29 (1050112): wrapper (7.7.26015): starting
00:24:29 (1050112): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 00:24:29] Arguments: --nthreads 8
[2025-06-03 00:24:29] Threads: 8
[2025-06-03 00:24:29] Checking for CVMFS
[2025-06-03 00:24:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 00:24:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 00:24:29] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 00:24:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 00:24:30] 2.12.6.0 4870 35388 382256 146730 3 61 28955006 32503809 9267 16776704 0 270114603 99.635 250855958 22124 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 00:24:30] CVMFS is ok
[2025-06-03 00:24:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 00:24:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 00:24:30] Further information can be found at the LHC@home message board.
[2025-06-03 00:24:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 00:24:30] Checking for apptainer binary...
[2025-06-03 00:24:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 00:24:30] Running /usr/bin/apptainer --version
[2025-06-03 00:24:30] apptainer version 1.4.1-1.el9
[2025-06-03 00:24:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 00:24:30] c7-3-16.aglt2.org
[2025-06-03 00:24:30] apptainer works
[2025-06-03 00:24:30] Set ATHENA_PROC_NUMBER=8
[2025-06-03 00:24:30] Set ATHENA_CORE_NUMBER=8
[2025-06-03 00:24:30] Starting ATLAS job with PandaID=6666121586
[2025-06-03 00:24:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 01:38:12]  *** The last 200 lines of the pilot log: ***
[2025-06-03 01:38:12]  lfn=log.44871837._054990.job.log.tgz.1
[2025-06-03 01:38:12]  mtime=0
[2025-06-03 01:38:12]  protocol_id=None
[2025-06-03 01:38:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 01:38:12]  replicas=None
[2025-06-03 01:38:12]  scope=mc23_13p6TeV
[2025-06-03 01:38:12]  status=None
[2025-06-03 01:38:12]  status_code=0
[2025-06-03 01:38:12]  storage_token=
[2025-06-03 01:38:12]  surl=/tmp/boinchome/slots/4/PanDA_Pilot-6666121586/log.44871837._054990.job.log.tgz.1
[2025-06-03 01:38:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/86/78/log.44871837._054990.job.log.tgz.1
[2025-06-03 01:38:12]  workdir=None
[2025-06-03 01:38:12] ]
[2025-06-03 01:38:12] 2025-06-03 05:37:43,299 | INFO     | transferring file log.44871837._054990.job.log.tgz.1 from /tmp/boinchome/slots/4/PanDA_Pilot-6666121586/log.44871837._054990.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 01:38:12] 2025-06-03 05:37:43,299 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/4/PanDA_Pilot-6666121586/log.44871837._054990.job.log.tgz.1 /tmp/boinchome/slots/4/log.44871837._054990.job
[2025-06-03 01:38:12] 2025-06-03 05:37:43,325 | INFO     | adding to output.list: log.44871837._054990.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/86/78/log.44871837._054990.job.log.tg
[2025-06-03 01:38:12] 2025-06-03 05:37:43,326 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 01:38:12] 2025-06-03 05:37:43,326 | INFO     | summary of transferred files:
[2025-06-03 01:38:12] 2025-06-03 05:37:43,326 | INFO     |  -- lfn=log.44871837._054990.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 01:38:12] 2025-06-03 05:37:43,327 | INFO     | stage-out finished correctly
[2025-06-03 01:38:12] 2025-06-03 05:37:43,632 | INFO     | number of running child processes to parent process 1060743: 1
[2025-06-03 01:38:12] 2025-06-03 05:37:43,632 | INFO     | maximum number of monitored processes: 6
[2025-06-03 01:38:12] 2025-06-03 05:37:45,101 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 01:38:12] 2025-06-03 05:37:45,957 | INFO     | job 6666121586 has state=finished
[2025-06-03 01:38:12] 2025-06-03 05:37:45,957 | INFO     | preparing for final server update for job 6666121586 in state='finished'
[2025-06-03 01:38:12] 2025-06-03 05:37:46,013 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-06-03 01:38:12] 2025-06-03 05:37:46,013 | INFO     | this job has now completed (state=finished)
[2025-06-03 01:38:12] 2025-06-03 05:37:46,014 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 01:38:12] 2025-06-03 05:37:46,014 | INFO     | log transfer has been attempted: DONE
[2025-06-03 01:38:12] 2025-06-03 05:37:46,014 | INFO     | job 6666121586 has finished - writing final server update
[2025-06-03 01:38:12] 2025-06-03 05:37:46,014 | INFO     | total number of processed events: 400 (read)
[2025-06-03 01:38:12] 2025-06-03 05:37:46,031 | INFO     | executing command: lscpu
[2025-06-03 01:38:12] 2025-06-03 05:37:46,127 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 01:38:12] 2025-06-03 05:37:46,136 | INFO     | monitor loop #321: job 0:6666121586 is in state 'finished'
[2025-06-03 01:38:12] 2025-06-03 05:37:46,136 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 01:38:12] 2025-06-03 05:37:48,639 | INFO     | monitor loop #322: job 0:6666121586 is in state 'finished'
[2025-06-03 01:38:12] 2025-06-03 05:37:48,639 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 01:38:12] 2025-06-03 05:37:50,963 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 01:38:12] 2025-06-03 05:37:50,964 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6666121586/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 01:38:12] 2025-06-03 05:37:50,965 | INFO     | extracted standard info from prmon json
[2025-06-03 01:38:12] 2025-06-03 05:37:50,965 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 01:38:12] 2025-06-03 05:37:50,965 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 01:38:12] 2025-06-03 05:37:50,965 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 01:38:12] 2025-06-03 05:37:50,966 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 01:38:12] 2025-06-03 05:37:50,967 | INFO     | fitting pss+swap vs Time
[2025-06-03 01:38:12] 2025-06-03 05:37:50,968 | INFO     | sum of square deviations: 85136480.0
[2025-06-03 01:38:12] 2025-06-03 05:37:50,968 | INFO     | sum of deviations: 6505052749.0
[2025-06-03 01:38:12] 2025-06-03 05:37:50,968 | INFO     | mean x: 1748926966.0
[2025-06-03 01:38:12] 2025-06-03 05:37:50,968 | INFO     | mean y: 2123685.153846154
[2025-06-03 01:38:12] 2025-06-03 05:37:50,968 | INFO     | -- intersect: -133628749566.57713
[2025-06-03 01:38:12] 2025-06-03 05:37:50,968 | INFO     | intersect: -133628749566.57713
[2025-06-03 01:38:12] 2025-06-03 05:37:50,968 | INFO     | chi2: 0.9286360316472355
[2025-06-03 01:38:12] 2025-06-03 05:37:50,969 | INFO     | -- intersect: -133628749566.57713
[2025-06-03 01:38:12] 2025-06-03 05:37:50,969 | INFO     | current memory leak: 76.41 B/s (using 65 data points, chi2=0.93)
[2025-06-03 01:38:12] 2025-06-03 05:37:50,969 | INFO     | ..............................
[2025-06-03 01:38:12] 2025-06-03 05:37:50,969 | INFO     | . Timing measurements:
[2025-06-03 01:38:12] 2025-06-03 05:37:50,969 | INFO     | . get job = 0 s
[2025-06-03 01:38:12] 2025-06-03 05:37:50,969 | INFO     | . initial setup = 3 s
[2025-06-03 01:38:12] 2025-06-03 05:37:50,969 | INFO     | . payload setup = 6 s
[2025-06-03 01:38:12] 2025-06-03 05:37:50,969 | INFO     | . stage-in = 0 s
[2025-06-03 01:38:12] 2025-06-03 05:37:50,970 | INFO     | . payload execution = 4354 s
[2025-06-03 01:38:12] 2025-06-03 05:37:50,970 | INFO     | . stage-out = 0 s
[2025-06-03 01:38:12] 2025-06-03 05:37:50,970 | INFO     | . log creation = 0 s
[2025-06-03 01:38:12] 2025-06-03 05:37:50,970 | INFO     | ..............................
[2025-06-03 01:38:12] 2025-06-03 05:37:51,054 | INFO     | 
[2025-06-03 01:38:12] 2025-06-03 05:37:51,054 | INFO     | job summary report
[2025-06-03 01:38:12] 2025-06-03 05:37:51,054 | INFO     | --------------------------------------------------
[2025-06-03 01:38:12] 2025-06-03 05:37:51,054 | INFO     | PanDA job id: 6666121586
[2025-06-03 01:38:12] 2025-06-03 05:37:51,054 | INFO     | task id: 44871837
[2025-06-03 01:38:12] 2025-06-03 05:37:51,054 | INFO     | errors: (none)
[2025-06-03 01:38:12] 2025-06-03 05:37:51,055 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 01:38:12] 2025-06-03 05:37:51,055 | INFO     | pilot state: finished 
[2025-06-03 01:38:12] 2025-06-03 05:37:51,055 | INFO     | transexitcode: 0
[2025-06-03 01:38:12] 2025-06-03 05:37:51,055 | INFO     | exeerrorcode: 0
[2025-06-03 01:38:12] 2025-06-03 05:37:51,055 | INFO     | exeerrordiag: 
[2025-06-03 01:38:12] 2025-06-03 05:37:51,055 | INFO     | exitcode: 0
[2025-06-03 01:38:12] 2025-06-03 05:37:51,055 | INFO     | exitmsg: OK
[2025-06-03 01:38:12] 2025-06-03 05:37:51,055 | INFO     | cpuconsumptiontime: 29032 s
[2025-06-03 01:38:12] 2025-06-03 05:37:51,055 | INFO     | nevents: 400
[2025-06-03 01:38:12] 2025-06-03 05:37:51,055 | INFO     | neventsw: 0
[2025-06-03 01:38:12] 2025-06-03 05:37:51,055 | INFO     | pid: 1060743
[2025-06-03 01:38:12] 2025-06-03 05:37:51,055 | INFO     | pgrp: 1060743
[2025-06-03 01:38:12] 2025-06-03 05:37:51,055 | INFO     | corecount: 8
[2025-06-03 01:38:12] 2025-06-03 05:37:51,055 | INFO     | event service: False
[2025-06-03 01:38:12] 2025-06-03 05:37:51,056 | INFO     | sizes: {0: 2404406, 1: 2405262, 6: 2405468, 12: 2405496, 4364: 2431218, 4366: 2440159, 4368: 2440343, 4374: 2440513}
[2025-06-03 01:38:12] 2025-06-03 05:37:51,056 | INFO     | --------------------------------------------------
[2025-06-03 01:38:12] 2025-06-03 05:37:51,056 | INFO     | 
[2025-06-03 01:38:12] 2025-06-03 05:37:51,056 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-06-03 01:38:12] 2025-06-03 05:37:51,080 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 01:38:12] 2025-06-03 05:37:51,081 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 01:38:12] 2025-06-03 05:37:51,081 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 01:38:12] 2025-06-03 05:37:51,081 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 01:38:12] 2025-06-03 05:37:51,081 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 01:38:12] 2025-06-03 05:37:51,081 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 01:38:12] 2025-06-03 05:37:51,081 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 01:38:12] 2025-06-03 05:37:51,081 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 01:38:12] 2025-06-03 05:37:51,081 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 01:38:12] 2025-06-03 05:37:51,081 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 01:38:12] 2025-06-03 05:37:51,081 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 01:38:12] 2025-06-03 05:37:51,082 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 01:38:12] 2025-06-03 05:37:51,082 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 01:38:12] 2025-06-03 05:37:51,082 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 01:38:12] 2025-06-03 05:37:51,082 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 01:38:12] 2025-06-03 05:37:51,082 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 01:38:12] 2025-06-03 05:37:51,082 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 01:38:12] 2025-06-03 05:37:51,082 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 01:38:12] 2025-06-03 05:37:51,082 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 01:38:12] 2025-06-03 05:37:51,082 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 01:38:12] 2025-06-03 05:37:51,082 | INFO     | job 6666121586 has completed (purged errors)
[2025-06-03 01:38:12] 2025-06-03 05:37:51,082 | INFO     | overall cleanup function is called
[2025-06-03 01:38:12] 2025-06-03 05:37:52,091 | INFO     | --- collectZombieJob: --- 10, [1060743]
[2025-06-03 01:38:12] 2025-06-03 05:37:52,091 | INFO     | zombie collector waiting for pid 1060743
[2025-06-03 01:38:12] 2025-06-03 05:37:52,091 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 01:38:12] 2025-06-03 05:37:52,091 | INFO     | collected zombie processes
[2025-06-03 01:38:12] 2025-06-03 05:37:52,091 | INFO     | will attempt to kill all subprocesses of pid=1060743
[2025-06-03 01:38:12] 2025-06-03 05:37:52,515 | INFO     | process IDs to be killed: [1060743] (in reverse order)
[2025-06-03 01:38:12] 2025-06-03 05:37:52,654 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 01:38:12] 2025-06-03 05:37:52,654 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 01:38:12] 2025-06-03 05:37:52,673 | INFO     | did not find any defunct processes belonging to 1060743
[2025-06-03 01:38:12] 2025-06-03 05:37:52,686 | INFO     | did not find any defunct processes belonging to 1060743
[2025-06-03 01:38:12] 2025-06-03 05:37:52,687 | INFO     | ready for new job
[2025-06-03 01:38:12] 2025-06-03 05:37:52,687 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 01:38:12] 2025-06-03 05:37:52,689 | INFO     | **************************************
[2025-06-03 01:38:12] 2025-06-03 05:37:52,689 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 01:38:12] 2025-06-03 05:37:52,689 | INFO     | **************************************
[2025-06-03 01:38:12] 2025-06-03 05:37:52,689 | INFO     | 
[2025-06-03 01:38:12] 2025-06-03 05:37:52,707 | INFO     | architecture information:
[2025-06-03 01:38:12] 2025-06-03 05:37:52,707 | INFO     | executing command: cat /etc/os-release
[2025-06-03 01:38:12] 2025-06-03 05:37:52,728 | INFO     | cat /etc/os-release:
[2025-06-03 01:38:12] NAME="CentOS Linux"
[2025-06-03 01:38:12] VERSION="7 (Core)"
[2025-06-03 01:38:12] ID="centos"
[2025-06-03 01:38:12] ID_LIKE="rhel fedora"
[2025-06-03 01:38:12] VERSION_ID="7"
[2025-06-03 01:38:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 01:38:12] ANSI_COLOR="0;31"
[2025-06-03 01:38:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 01:38:12] HOME_URL="https://www.centos.org/"
[2025-06-03 01:38:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 01:38:12] 
[2025-06-03 01:38:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 01:38:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 01:38:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 01:38:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 01:38:12] 
[2025-06-03 01:38:12] 2025-06-03 05:37:52,729 | INFO     | **************************************
[2025-06-03 01:38:12] 2025-06-03 05:37:53,232 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-06-03 01:38:12] 2025-06-03 05:37:53,250 | INFO     | sufficient remaining disk space (90138738688 B)
[2025-06-03 01:38:12] 2025-06-03 05:37:53,250 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 01:38:12] 2025-06-03 05:37:53,250 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 01:38:12] 2025-06-03 05:37:53,251 | INFO     | update_server=False
[2025-06-03 01:38:12] 2025-06-03 05:37:53,251 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 01:38:12] 2025-06-03 05:37:53,251 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 01:38:12] 2025-06-03 05:37:53,252 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 01:38:12] 2025-06-03 05:37:53,252 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 01:38:12] 2025-06-03 05:37:53,252 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 01:38:12] 2025-06-03 05:37:53,339 | INFO     | all payload control threads have been joined
[2025-06-03 01:38:12] 2025-06-03 05:37:53,650 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-03 01:38:12] 2025-06-03 05:37:53,650 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-03 01:38:12] 2025-06-03 05:37:53,651 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 01:38:12] 2025-06-03 05:37:53,651 | INFO     | will abort loop
[2025-06-03 01:38:12] 2025-06-03 05:37:53,735 | INFO     | all data control threads have been joined
[2025-06-03 01:38:12] 2025-06-03 05:37:53,918 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 01:38:12] 2025-06-03 05:37:54,255 | INFO     | [job] retrieve thread has finished
[2025-06-03 01:38:12] 2025-06-03 05:37:54,344 | INFO     | [payload] control thread has finished
[2025-06-03 01:38:12] 2025-06-03 05:37:54,479 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 01:38:12] 2025-06-03 05:37:54,645 | INFO     | all job control threads have been joined
[2025-06-03 01:38:12] 2025-06-03 05:37:54,656 | INFO     | [job] job monitor thread has finished
[2025-06-03 01:38:12] 2025-06-03 05:37:54,734 | INFO     | [job] validate thread has finished
[2025-06-03 01:38:12] 2025-06-03 05:37:54,737 | INFO     | [payload] failed_post thread has finished
[2025-06-03 01:38:12] 2025-06-03 05:37:54,741 | INFO     | [data] control thread has finished
[2025-06-03 01:38:12] 2025-06-03 05:37:55,065 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 01:38:12] 2025-06-03 05:37:55,082 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 01:38:12] 2025-06-03 05:37:55,344 | INFO     | [payload] validate_post thread has finished
[2025-06-03 01:38:12] 2025-06-03 05:37:55,368 | INFO     | [data] copytool_in thread has finished
[2025-06-03 01:38:12] 2025-06-03 05:37:55,651 | INFO     | [job] control thread has finished
[2025-06-03 01:38:12] 2025-06-03 05:37:55,688 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 01:38:12] 2025-06-03 05:37:55,919 | INFO     | [data] copytool_out thread has finished
[2025-06-03 01:38:12] 2025-06-03 05:37:56,065 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 01:38:12] 2025-06-03 05:37:57,071 | INFO     | [job] queue monitor thread has finished
[2025-06-03 01:38:12] 2025-06-03 05:37:59,694 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 01:38:12] 2025-06-03 05:38:03,779 | INFO     | job.realtimelogging is not enabled
[2025-06-03 01:38:12] 2025-06-03 05:38:04,785 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 01:38:12] 2025-06-03 05:38:06,698 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139851044366144)>', '<ExcThread(monitor, started 139850535642880)>']
[2025-06-03 01:38:12] 2025-06-03 05:38:07,322 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 01:38:12] 2025-06-03 05:38:07,323 | INFO     | [monitor] control thread has ended
[2025-06-03 01:38:12] 2025-06-03 05:38:11,710 | INFO     | all workflow threads have been joined
[2025-06-03 01:38:12] 2025-06-03 05:38:11,711 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 01:38:12] 2025-06-03 05:38:11,711 | INFO     | traces error code: 0
[2025-06-03 01:38:12] 2025-06-03 05:38:11,711 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 01:38:12] 2025-06-03 05:38:11,831 [wrapper] ==== pilot stdout END ====
[2025-06-03 01:38:12] 2025-06-03 05:38:11,835 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 01:38:12] 2025-06-03 05:38:11,838 [wrapper] pilotpid: 1053734
[2025-06-03 01:38:12] 2025-06-03 05:38:11,841 [wrapper] Pilot exit status: 0
[2025-06-03 01:38:12] 2025-06-03 05:38:11,854 [wrapper] pandaids: 6666121586
[2025-06-03 01:38:12] 2025-06-03 05:38:11,951 [wrapper] cleanup supervisor_pilot 1358932 1053735
[2025-06-03 01:38:12] 2025-06-03 05:38:11,955 [wrapper] Test setup, not cleaning
[2025-06-03 01:38:12] 2025-06-03 05:38:11,958 [wrapper] apfmon messages muted
[2025-06-03 01:38:12] 2025-06-03 05:38:11,962 [wrapper] ==== wrapper stdout END ====
[2025-06-03 01:38:12] 2025-06-03 05:38:11,965 [wrapper] ==== wrapper stderr END ====
[2025-06-03 01:38:12]  *** Error codes and diagnostics ***
[2025-06-03 01:38:12]     "exeErrorCode": 0,
[2025-06-03 01:38:12]     "exeErrorDiag": "",
[2025-06-03 01:38:12]     "pilotErrorCode": 0,
[2025-06-03 01:38:12]     "pilotErrorDiag": "",
[2025-06-03 01:38:12]  *** Listing of results directory ***
[2025-06-03 01:38:12] total 411164
[2025-06-03 01:38:12] -rw-r--r--. 1 boincer umatlas    495897 May 26 14:09 pilot3.tar.gz
[2025-06-03 01:38:12] -rwx------. 1 boincer umatlas     37140 May 26 14:23 runpilot2-wrapper.sh
[2025-06-03 01:38:12] -rw-r--r--. 1 boincer umatlas      5111 May 26 14:23 queuedata.json
[2025-06-03 01:38:12] -rw-r--r--. 1 boincer umatlas       100 Jun  3 00:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 01:38:12] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 00:24 run_atlas
[2025-06-03 01:38:12] -rw-r--r--. 1 boincer umatlas       105 Jun  3 00:24 job.xml
[2025-06-03 01:38:12] -rw-r--r--. 2 boincer umatlas 225625992 Jun  3 00:24 EVNT.44871834._002183.pool.root.1
[2025-06-03 01:38:12] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 00:24 start_atlas.sh
[2025-06-03 01:38:12] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 00:24 shared
[2025-06-03 01:38:12] -rw-r--r--. 2 boincer umatlas    508872 Jun  3 00:24 input.tar.gz
[2025-06-03 01:38:12] -rw-r--r--. 1 boincer umatlas         0 Jun  3 00:24 boinc_lockfile
[2025-06-03 01:38:12] -rw-r--r--. 1 boincer umatlas      2559 Jun  3 00:24 pandaJob.out
[2025-06-03 01:38:12] -rw-------. 1 boincer umatlas    988081 Jun  3 00:24 agis_schedconf.cvmfs.json
[2025-06-03 01:38:12] -rw-------. 1 boincer umatlas   1603667 Jun  3 00:24 agis_ddmendpoints.agis.ALL.json
[2025-06-03 01:38:12] drwx------. 4 boincer umatlas      4096 Jun  3 00:24 pilot3
[2025-06-03 01:38:12] -rw-r--r--. 1 boincer umatlas      6935 Jun  3 01:36 init_data.xml
[2025-06-03 01:38:12] -rw-r--r--. 1 boincer umatlas       530 Jun  3 01:37 boinc_task_state.xml
[2025-06-03 01:38:12] -rw-------. 1 boincer umatlas 190085309 Jun  3 01:37 HITS.44871837._054990.pool.root.1
[2025-06-03 01:38:12] -rw-------. 1 boincer umatlas        95 Jun  3 01:37 pilot_heartbeat.json
[2025-06-03 01:38:12] -rw-------. 1 boincer umatlas      1027 Jun  3 01:37 memory_monitor_summary.json
[2025-06-03 01:38:12] -rw-------. 1 boincer umatlas    312623 Jun  3 01:37 log.44871837._054990.job.log.tgz.1
[2025-06-03 01:38:12] -rw-------. 1 boincer umatlas      7682 Jun  3 01:37 heartbeat.json
[2025-06-03 01:38:12] -rw-r--r--. 1 boincer umatlas        27 Jun  3 01:38 wrapper_checkpoint.txt
[2025-06-03 01:38:12] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 01:38 boinc_mmap_file
[2025-06-03 01:38:12] -rw-------. 1 boincer umatlas      4734 Jun  3 01:38 pilotlog.txt
[2025-06-03 01:38:12] -rw-------. 1 boincer umatlas    429559 Jun  3 01:38 log.44871837._054990.job.log.1
[2025-06-03 01:38:12] -rw-------. 1 boincer umatlas       357 Jun  3 01:38 output.list
[2025-06-03 01:38:12] -rw-r--r--. 1 boincer umatlas       620 Jun  3 01:38 runtime_log
[2025-06-03 01:38:12] -rw-------. 1 boincer umatlas    757760 Jun  3 01:38 result.tar.gz
[2025-06-03 01:38:12] -rw-r--r--. 1 boincer umatlas      8654 Jun  3 01:38 runtime_log.err
[2025-06-03 01:38:12] -rw-------. 1 boincer umatlas       651 Jun  3 01:38 79lKDmxerd7n9Rq4apOajLDm4fhM0noT9bVof3QYDmhYQKDmFqVrRn.diag
[2025-06-03 01:38:12] -rw-r--r--. 1 boincer umatlas     21533 Jun  3 01:38 stderr.txt
[2025-06-03 01:38:12] HITS file was successfully produced:
[2025-06-03 01:38:12] -rw-------. 1 boincer umatlas 190085309 Jun  3 01:37 shared/HITS.pool.root.1
[2025-06-03 01:38:12]  *** Contents of shared directory: ***
[2025-06-03 01:38:12] total 407236
[2025-06-03 01:38:12] -rw-r--r--. 2 boincer umatlas 225625992 Jun  3 00:24 ATLAS.root_0
[2025-06-03 01:38:12] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 00:24 start_atlas.sh
[2025-06-03 01:38:12] -rw-r--r--. 2 boincer umatlas    508872 Jun  3 00:24 input.tar.gz
[2025-06-03 01:38:12] -rw-------. 1 boincer umatlas 190085309 Jun  3 01:37 HITS.pool.root.1
[2025-06-03 01:38:12] -rw-------. 1 boincer umatlas    757760 Jun  3 01:38 result.tar.gz
01:38:13 (1050112): run_atlas exited; CPU time 29184.408137
01:38:13 (1050112): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN