Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:30:42 (3713203): wrapper (7.7.26015): starting
14:30:42 (3713203): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 14:30:42] Arguments: --nthreads 4
[2025-06-06 14:30:42] Threads: 4
[2025-06-06 14:30:42] Checking for CVMFS
[2025-06-06 14:30:42] No cvmfs_config command found, will try listing directly
[2025-06-06 14:30:42] CVMFS is ok
[2025-06-06 14:30:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 14:30:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 14:30:42] Further information can be found at the LHC@home message board.
[2025-06-06 14:30:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 14:30:42] Checking for apptainer binary...
[2025-06-06 14:30:42] which: no apptainer in ((null))
[2025-06-06 14:30:42] apptainer is not installed, using version from CVMFS
[2025-06-06 14:30:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 14:30:42] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot64/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2025-06-06 14:30:42] apptainer works
[2025-06-06 14:30:42] Set ATHENA_PROC_NUMBER=4
[2025-06-06 14:30:42] Set ATHENA_CORE_NUMBER=4
[2025-06-06 14:30:42] Starting ATLAS job with PandaID=6677419861
[2025-06-06 14:30:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot64/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 15:52:17]  *** The last 200 lines of the pilot log: ***
[2025-06-06 15:52:17]  guid=59f1242b-7f7d-40b4-8896-793348ed3e8b
[2025-06-06 15:52:17]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-06 15:52:17]  is_altstaged=None
[2025-06-06 15:52:17]  is_tar=False
[2025-06-06 15:52:17]  lfn=log.45006595._014486.job.log.tgz.1
[2025-06-06 15:52:17]  mtime=0
[2025-06-06 15:52:17]  protocol_id=None
[2025-06-06 15:52:17]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 15:52:17]  replicas=None
[2025-06-06 15:52:17]  scope=mc23_13p6TeV
[2025-06-06 15:52:17]  status=None
[2025-06-06 15:52:17]  status_code=0
[2025-06-06 15:52:17]  storage_token=
[2025-06-06 15:52:17]  surl=/scratch/boinc/var/slot64/slots/0/PanDA_Pilot-6677419861/log.45006595._014486.job.log.tgz.1
[2025-06-06 15:52:17]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/74/9f/log.45006595._014486.job.log.tgz.1
[2025-06-06 15:52:17]  workdir=None
[2025-06-06 15:52:17] ]
[2025-06-06 15:52:17] 2025-06-06 13:51:58,060 | INFO     | transferring file log.45006595._014486.job.log.tgz.1 from /scratch/boinc/var/slot64/slots/0/PanDA_Pilot-6677419861/log.45006595._014486.job.log.tgz.1 to /scratch/b
[2025-06-06 15:52:17] 2025-06-06 13:51:58,060 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot64/slots/0/PanDA_Pilot-6677419861/log.45006595._014486.job.log.tgz.1 /scratch/boinc/var/slot64/slots/0/lo
[2025-06-06 15:52:17] 2025-06-06 13:51:58,077 | INFO     | adding to output.list: log.45006595._014486.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/74/9f/log.45006595._014486.job.log.tg
[2025-06-06 15:52:17] 2025-06-06 13:51:58,078 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 15:52:17] 2025-06-06 13:51:58,078 | INFO     | summary of transferred files:
[2025-06-06 15:52:17] 2025-06-06 13:51:58,078 | INFO     |  -- lfn=log.45006595._014486.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 15:52:17] 2025-06-06 13:51:58,078 | INFO     | stage-out finished correctly
[2025-06-06 15:52:17] 2025-06-06 13:51:58,882 | INFO     | monitor loop #360: job 0:6677419861 is in state 'finished'
[2025-06-06 15:52:17] 2025-06-06 13:51:58,883 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 15:52:17] 2025-06-06 13:52:01,057 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 15:52:17] 2025-06-06 13:52:01,111 | INFO     | job 6677419861 has state=finished
[2025-06-06 15:52:17] 2025-06-06 13:52:01,111 | INFO     | preparing for final server update for job 6677419861 in state='finished'
[2025-06-06 15:52:17] 2025-06-06 13:52:01,112 | INFO     | this job has now completed (state=finished)
[2025-06-06 15:52:17] 2025-06-06 13:52:01,112 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 15:52:17] 2025-06-06 13:52:01,112 | INFO     | log transfer has been attempted: DONE
[2025-06-06 15:52:17] 2025-06-06 13:52:01,113 | INFO     | job 6677419861 has finished - writing final server update
[2025-06-06 15:52:17] 2025-06-06 13:52:01,113 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3001037/.job.ad'
[2025-06-06 15:52:17] 2025-06-06 13:52:01,113 | INFO     | total number of processed events: 400 (read)
[2025-06-06 15:52:17] 2025-06-06 13:52:01,121 | INFO     | executing command: lscpu
[2025-06-06 15:52:17] 2025-06-06 13:52:01,197 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 15:52:17] 2025-06-06 13:52:01,385 | INFO     | monitor loop #361: job 0:6677419861 is in state 'finished'
[2025-06-06 15:52:17] 2025-06-06 13:52:01,385 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 15:52:17] 2025-06-06 13:52:03,888 | INFO     | monitor loop #362: job 0:6677419861 is in state 'finished'
[2025-06-06 15:52:17] 2025-06-06 13:52:03,888 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 15:52:17] 2025-06-06 13:52:04,653 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-06 15:52:17] 2025-06-06 13:52:04,653 | INFO     | using path: /scratch/boinc/var/slot64/slots/0/PanDA_Pilot-6677419861/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 15:52:17] 2025-06-06 13:52:04,654 | INFO     | extracted standard info from prmon json
[2025-06-06 15:52:17] 2025-06-06 13:52:04,655 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 15:52:17] 2025-06-06 13:52:04,655 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 15:52:17] 2025-06-06 13:52:04,655 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 15:52:17] 2025-06-06 13:52:04,655 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 15:52:17] 2025-06-06 13:52:04,657 | INFO     | fitting pss+swap vs Time
[2025-06-06 15:52:17] 2025-06-06 13:52:04,657 | INFO     | sum of square deviations: 120605052.0
[2025-06-06 15:52:17] 2025-06-06 13:52:04,658 | INFO     | sum of deviations: -5154161023.000002
[2025-06-06 15:52:17] 2025-06-06 13:52:04,658 | INFO     | mean x: 1749215578.0
[2025-06-06 15:52:17] 2025-06-06 13:52:04,658 | INFO     | mean y: 2373677.8630136987
[2025-06-06 15:52:17] 2025-06-06 13:52:04,658 | INFO     | -- intersect: 74756611609.38863
[2025-06-06 15:52:17] 2025-06-06 13:52:04,658 | INFO     | intersect: 74756611609.38863
[2025-06-06 15:52:17] 2025-06-06 13:52:04,658 | INFO     | chi2: 0.11531181141163645
[2025-06-06 15:52:17] 2025-06-06 13:52:04,658 | INFO     | -- intersect: 74756611609.38863
[2025-06-06 15:52:17] 2025-06-06 13:52:04,658 | INFO     | current memory leak: -42.74 B/s (using 73 data points, chi2=0.12)
[2025-06-06 15:52:17] 2025-06-06 13:52:04,659 | INFO     | ..............................
[2025-06-06 15:52:17] 2025-06-06 13:52:04,659 | INFO     | . Timing measurements:
[2025-06-06 15:52:17] 2025-06-06 13:52:04,659 | INFO     | . get job = 0 s
[2025-06-06 15:52:17] 2025-06-06 13:52:04,659 | INFO     | . initial setup = 1 s
[2025-06-06 15:52:17] 2025-06-06 13:52:04,659 | INFO     | . payload setup = 6 s
[2025-06-06 15:52:17] 2025-06-06 13:52:04,659 | INFO     | . stage-in = 0 s
[2025-06-06 15:52:17] 2025-06-06 13:52:04,659 | INFO     | . payload execution = 4841 s
[2025-06-06 15:52:17] 2025-06-06 13:52:04,659 | INFO     | . stage-out = 0 s
[2025-06-06 15:52:17] 2025-06-06 13:52:04,659 | INFO     | . log creation = 0 s
[2025-06-06 15:52:17] 2025-06-06 13:52:04,659 | INFO     | ..............................
[2025-06-06 15:52:17] 2025-06-06 13:52:04,717 | INFO     | 
[2025-06-06 15:52:17] 2025-06-06 13:52:04,718 | INFO     | job summary report
[2025-06-06 15:52:17] 2025-06-06 13:52:04,718 | INFO     | --------------------------------------------------
[2025-06-06 15:52:17] 2025-06-06 13:52:04,718 | INFO     | PanDA job id: 6677419861
[2025-06-06 15:52:17] 2025-06-06 13:52:04,718 | INFO     | task id: 45006595
[2025-06-06 15:52:17] 2025-06-06 13:52:04,718 | INFO     | errors: (none)
[2025-06-06 15:52:17] 2025-06-06 13:52:04,718 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 15:52:17] 2025-06-06 13:52:04,718 | INFO     | pilot state: finished 
[2025-06-06 15:52:17] 2025-06-06 13:52:04,718 | INFO     | transexitcode: 0
[2025-06-06 15:52:17] 2025-06-06 13:52:04,718 | INFO     | exeerrorcode: 0
[2025-06-06 15:52:17] 2025-06-06 13:52:04,718 | INFO     | exeerrordiag: 
[2025-06-06 15:52:17] 2025-06-06 13:52:04,718 | INFO     | exitcode: 0
[2025-06-06 15:52:17] 2025-06-06 13:52:04,718 | INFO     | exitmsg: OK
[2025-06-06 15:52:17] 2025-06-06 13:52:04,718 | INFO     | cpuconsumptiontime: 18747 s
[2025-06-06 15:52:17] 2025-06-06 13:52:04,718 | INFO     | nevents: 400
[2025-06-06 15:52:17] 2025-06-06 13:52:04,719 | INFO     | neventsw: 0
[2025-06-06 15:52:17] 2025-06-06 13:52:04,719 | INFO     | pid: 3727048
[2025-06-06 15:52:17] 2025-06-06 13:52:04,719 | INFO     | pgrp: 3727048
[2025-06-06 15:52:17] 2025-06-06 13:52:04,719 | INFO     | corecount: 4
[2025-06-06 15:52:17] 2025-06-06 13:52:04,719 | INFO     | event service: False
[2025-06-06 15:52:17] 2025-06-06 13:52:04,719 | INFO     | sizes: {0: 2397124, 1: 2397379, 5: 2397585, 11: 2397641, 4851: 2423858, 4852: 2432821, 4855: 2433005, 4859: 2433175}
[2025-06-06 15:52:17] 2025-06-06 13:52:04,719 | INFO     | --------------------------------------------------
[2025-06-06 15:52:17] 2025-06-06 13:52:04,719 | INFO     | 
[2025-06-06 15:52:17] 2025-06-06 13:52:04,719 | INFO     | executing command: ls -lF /scratch/boinc/var/slot64/slots/0
[2025-06-06 15:52:17] 2025-06-06 13:52:04,738 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 15:52:17] 2025-06-06 13:52:04,738 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 15:52:17] 2025-06-06 13:52:04,738 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 15:52:17] 2025-06-06 13:52:04,738 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 15:52:17] 2025-06-06 13:52:04,738 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 15:52:17] 2025-06-06 13:52:04,738 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 15:52:17] 2025-06-06 13:52:04,738 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 15:52:17] 2025-06-06 13:52:04,739 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 15:52:17] 2025-06-06 13:52:04,739 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 15:52:17] 2025-06-06 13:52:04,739 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 15:52:17] 2025-06-06 13:52:04,739 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 15:52:17] 2025-06-06 13:52:04,739 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 15:52:17] 2025-06-06 13:52:04,739 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 15:52:17] 2025-06-06 13:52:04,739 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 15:52:17] 2025-06-06 13:52:04,739 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 15:52:17] 2025-06-06 13:52:04,739 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 15:52:17] 2025-06-06 13:52:04,739 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 15:52:17] 2025-06-06 13:52:04,739 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 15:52:17] 2025-06-06 13:52:04,739 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 15:52:17] 2025-06-06 13:52:04,739 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 15:52:17] 2025-06-06 13:52:04,739 | INFO     | job 6677419861 has completed (purged errors)
[2025-06-06 15:52:17] 2025-06-06 13:52:04,739 | INFO     | overall cleanup function is called
[2025-06-06 15:52:17] 2025-06-06 13:52:05,747 | INFO     | --- collectZombieJob: --- 10, [3727048]
[2025-06-06 15:52:17] 2025-06-06 13:52:05,747 | INFO     | zombie collector waiting for pid 3727048
[2025-06-06 15:52:17] 2025-06-06 13:52:05,747 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 15:52:17] 2025-06-06 13:52:05,747 | INFO     | collected zombie processes
[2025-06-06 15:52:17] 2025-06-06 13:52:05,748 | INFO     | will attempt to kill all subprocesses of pid=3727048
[2025-06-06 15:52:17] 2025-06-06 13:52:06,058 | INFO     | process IDs to be killed: [3727048] (in reverse order)
[2025-06-06 15:52:17] 2025-06-06 13:52:06,179 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 15:52:17] 2025-06-06 13:52:06,179 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 15:52:17] 2025-06-06 13:52:06,197 | INFO     | did not find any defunct processes belonging to 3727048
[2025-06-06 15:52:17] 2025-06-06 13:52:06,207 | INFO     | did not find any defunct processes belonging to 3727048
[2025-06-06 15:52:17] 2025-06-06 13:52:06,207 | INFO     | ready for new job
[2025-06-06 15:52:17] 2025-06-06 13:52:06,207 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 15:52:17] 2025-06-06 13:52:06,209 | INFO     | **************************************
[2025-06-06 15:52:17] 2025-06-06 13:52:06,209 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 15:52:17] 2025-06-06 13:52:06,209 | INFO     | **************************************
[2025-06-06 15:52:17] 2025-06-06 13:52:06,209 | INFO     | 
[2025-06-06 15:52:17] 2025-06-06 13:52:06,214 | INFO     | architecture information:
[2025-06-06 15:52:17] 2025-06-06 13:52:06,214 | INFO     | executing command: cat /etc/os-release
[2025-06-06 15:52:17] 2025-06-06 13:52:06,228 | INFO     | cat /etc/os-release:
[2025-06-06 15:52:17] NAME="CentOS Linux"
[2025-06-06 15:52:17] VERSION="7 (Core)"
[2025-06-06 15:52:17] ID="centos"
[2025-06-06 15:52:17] ID_LIKE="rhel fedora"
[2025-06-06 15:52:17] VERSION_ID="7"
[2025-06-06 15:52:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 15:52:17] ANSI_COLOR="0;31"
[2025-06-06 15:52:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 15:52:17] HOME_URL="https://www.centos.org/"
[2025-06-06 15:52:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 15:52:17] 
[2025-06-06 15:52:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 15:52:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 15:52:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 15:52:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 15:52:17] 
[2025-06-06 15:52:17] 2025-06-06 13:52:06,228 | INFO     | **************************************
[2025-06-06 15:52:17] 2025-06-06 13:52:06,731 | INFO     | executing command: df -mP /scratch/boinc/var/slot64/slots/0
[2025-06-06 15:52:17] 2025-06-06 13:52:06,746 | INFO     | sufficient remaining disk space (3347241238528 B)
[2025-06-06 15:52:17] 2025-06-06 13:52:06,746 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 15:52:17] 2025-06-06 13:52:06,746 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 15:52:17] 2025-06-06 13:52:06,746 | INFO     | update_server=False
[2025-06-06 15:52:17] 2025-06-06 13:52:06,746 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 15:52:17] 2025-06-06 13:52:06,747 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 15:52:17] 2025-06-06 13:52:07,045 | INFO     | all data control threads have been joined
[2025-06-06 15:52:17] 2025-06-06 13:52:07,090 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 15:52:17] 2025-06-06 13:52:07,091 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 15:52:17] 2025-06-06 13:52:07,091 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 15:52:17] 2025-06-06 13:52:07,103 | INFO     | all payload control threads have been joined
[2025-06-06 15:52:17] 2025-06-06 13:52:07,117 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 15:52:17] 2025-06-06 13:52:07,396 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 15:52:17] 2025-06-06 13:52:07,397 | INFO     | aborting loop
[2025-06-06 15:52:17] 2025-06-06 13:52:07,752 | INFO     | [job] retrieve thread has finished
[2025-06-06 15:52:17] 2025-06-06 13:52:08,051 | INFO     | [data] control thread has finished
[2025-06-06 15:52:17] 2025-06-06 13:52:08,108 | INFO     | [payload] control thread has finished
[2025-06-06 15:52:17] 2025-06-06 13:52:08,143 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 15:52:17] 2025-06-06 13:52:08,194 | INFO     | all job control threads have been joined
[2025-06-06 15:52:17] 2025-06-06 13:52:08,383 | INFO     | [data] copytool_in thread has finished
[2025-06-06 15:52:17] 2025-06-06 13:52:08,398 | INFO     | [job] validate thread has finished
[2025-06-06 15:52:17] 2025-06-06 13:52:08,402 | INFO     | [job] job monitor thread has finished
[2025-06-06 15:52:17] 2025-06-06 13:52:08,545 | INFO     | [payload] failed_post thread has finished
[2025-06-06 15:52:17] 2025-06-06 13:52:08,593 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 15:52:17] 2025-06-06 13:52:08,610 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 15:52:17] 2025-06-06 13:52:08,752 | INFO     | [data] copytool_out thread has finished
[2025-06-06 15:52:17] 2025-06-06 13:52:09,005 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 15:52:17] 2025-06-06 13:52:09,160 | INFO     | [payload] validate_post thread has finished
[2025-06-06 15:52:17] 2025-06-06 13:52:09,200 | INFO     | [job] control thread has finished
[2025-06-06 15:52:17] 2025-06-06 13:52:09,728 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 15:52:17] 2025-06-06 13:52:10,734 | INFO     | [job] queue monitor thread has finished
[2025-06-06 15:52:17] 2025-06-06 13:52:11,122 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 15:52:17] 2025-06-06 13:52:12,513 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22658216785728)>', '<ExcThread(monitor, started 22657971996416)>']
[2025-06-06 15:52:17] 2025-06-06 13:52:13,117 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 15:52:17] 2025-06-06 13:52:13,118 | INFO     | [monitor] control thread has ended
[2025-06-06 15:52:17] 2025-06-06 13:52:17,538 | INFO     | all workflow threads have been joined
[2025-06-06 15:52:17] 2025-06-06 13:52:17,539 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 15:52:17] 2025-06-06 13:52:17,539 | INFO     | traces error code: 0
[2025-06-06 15:52:17] 2025-06-06 13:52:17,539 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 15:52:17] 2025-06-06 13:52:17,636 [wrapper] ==== pilot stdout END ====
[2025-06-06 15:52:17] 2025-06-06 13:52:17,639 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 15:52:17] 2025-06-06 13:52:17,642 [wrapper] pilotpid: 3717236
[2025-06-06 15:52:17] 2025-06-06 13:52:17,646 [wrapper] Pilot exit status: 0
[2025-06-06 15:52:17] 2025-06-06 13:52:17,657 [wrapper] pandaids: 6677419861
[2025-06-06 15:52:17] 2025-06-06 13:52:17,735 [wrapper] cleanup supervisor_pilot 3904795 3717237
[2025-06-06 15:52:17] 2025-06-06 13:52:17,739 [wrapper] Test setup, not cleaning
[2025-06-06 15:52:17] 2025-06-06 13:52:17,742 [wrapper] apfmon messages muted
[2025-06-06 15:52:17] 2025-06-06 13:52:17,744 [wrapper] ==== wrapper stdout END ====
[2025-06-06 15:52:17] 2025-06-06 13:52:17,747 [wrapper] ==== wrapper stderr END ====
[2025-06-06 15:52:17]  *** Error codes and diagnostics ***
[2025-06-06 15:52:17]     "exeErrorCode": 0,
[2025-06-06 15:52:17]     "exeErrorDiag": "",
[2025-06-06 15:52:17]     "pilotErrorCode": 0,
[2025-06-06 15:52:17]     "pilotErrorDiag": "",
[2025-06-06 15:52:17]  *** Listing of results directory ***
[2025-06-06 15:52:17] total 394888
[2025-06-06 15:52:17] -rw-r--r-- 1 boinc boinc    495897 Jun  3 01:21 pilot3.tar.gz
[2025-06-06 15:52:17] -rw-r--r-- 1 boinc boinc      5111 Jun  3 01:40 queuedata.json
[2025-06-06 15:52:17] -rwx------ 1 boinc boinc     37140 Jun  3 01:40 runpilot2-wrapper.sh
[2025-06-06 15:52:17] -rw-r--r-- 1 boinc boinc       100 Jun  6 14:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 15:52:17] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 14:30 run_atlas
[2025-06-06 15:52:17] -rw-r--r-- 1 boinc boinc       105 Jun  6 14:30 job.xml
[2025-06-06 15:52:17] -rw-r--r-- 2 boinc boinc 217216878 Jun  6 14:30 EVNT.45006593._000580.pool.root.1
[2025-06-06 15:52:17] -rw-r--r-- 1 boinc boinc      6683 Jun  6 14:30 init_data.xml
[2025-06-06 15:52:17] -rw-r--r-- 2 boinc boinc     15093 Jun  6 14:30 start_atlas.sh
[2025-06-06 15:52:17] drwxrwx--x 2 boinc boinc      4096 Jun  6 14:30 shared
[2025-06-06 15:52:17] -rw-r--r-- 2 boinc boinc    508880 Jun  6 14:30 input.tar.gz
[2025-06-06 15:52:17] -rw-r--r-- 1 boinc boinc         0 Jun  6 14:30 boinc_lockfile
[2025-06-06 15:52:17] -rw-r--r-- 1 boinc boinc      2524 Jun  6 14:30 pandaJob.out
[2025-06-06 15:52:17] -rw------- 1 boinc boinc    985741 Jun  6 14:30 agis_schedconf.cvmfs.json
[2025-06-06 15:52:17] -rw------- 1 boinc boinc   1598969 Jun  6 14:30 agis_ddmendpoints.agis.ALL.json
[2025-06-06 15:52:17] drwx------ 4 boinc boinc      4096 Jun  6 14:30 pilot3
[2025-06-06 15:52:17] -rw------- 1 boinc boinc 181873072 Jun  6 15:51 HITS.45006595._014486.pool.root.1
[2025-06-06 15:52:17] -rw------- 1 boinc boinc        95 Jun  6 15:51 pilot_heartbeat.json
[2025-06-06 15:52:17] -rw-r--r-- 1 boinc boinc       529 Jun  6 15:51 boinc_task_state.xml
[2025-06-06 15:52:17] -rw------- 1 boinc boinc      1043 Jun  6 15:51 memory_monitor_summary.json
[2025-06-06 15:52:17] -rw------- 1 boinc boinc    242636 Jun  6 15:51 log.45006595._014486.job.log.tgz.1
[2025-06-06 15:52:17] -rw------- 1 boinc boinc      7696 Jun  6 15:52 heartbeat.json
[2025-06-06 15:52:17] -rw-r--r-- 1 boinc boinc      8192 Jun  6 15:52 boinc_mmap_file
[2025-06-06 15:52:17] -rw-r--r-- 1 boinc boinc        27 Jun  6 15:52 wrapper_checkpoint.txt
[2025-06-06 15:52:17] -rw------- 1 boinc boinc      4364 Jun  6 15:52 pilotlog.txt
[2025-06-06 15:52:17] -rw------- 1 boinc boinc    480043 Jun  6 15:52 log.45006595._014486.job.log.1
[2025-06-06 15:52:17] -rw------- 1 boinc boinc       357 Jun  6 15:52 output.list
[2025-06-06 15:52:17] -rw-r--r-- 1 boinc boinc       620 Jun  6 15:52 runtime_log
[2025-06-06 15:52:17] -rw------- 1 boinc boinc    737280 Jun  6 15:52 result.tar.gz
[2025-06-06 15:52:17] -rw-r--r-- 1 boinc boinc      9025 Jun  6 15:52 runtime_log.err
[2025-06-06 15:52:17] -rw------- 1 boinc boinc       661 Jun  6 15:52 l2ALDmywTg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYAhKDmB1THCo.diag
[2025-06-06 15:52:17] -rw-r--r-- 1 boinc boinc     21176 Jun  6 15:52 stderr.txt
[2025-06-06 15:52:17] HITS file was successfully produced:
[2025-06-06 15:52:17] -rw------- 1 boinc boinc 181873072 Jun  6 15:51 shared/HITS.pool.root.1
[2025-06-06 15:52:17]  *** Contents of shared directory: ***
[2025-06-06 15:52:17] total 390984
[2025-06-06 15:52:17] -rw-r--r-- 2 boinc boinc 217216878 Jun  6 14:30 ATLAS.root_0
[2025-06-06 15:52:17] -rw-r--r-- 2 boinc boinc     15093 Jun  6 14:30 start_atlas.sh
[2025-06-06 15:52:17] -rw-r--r-- 2 boinc boinc    508880 Jun  6 14:30 input.tar.gz
[2025-06-06 15:52:17] -rw------- 1 boinc boinc 181873072 Jun  6 15:51 HITS.pool.root.1
[2025-06-06 15:52:17] -rw------- 1 boinc boinc    737280 Jun  6 15:52 result.tar.gz
15:52:19 (3713203): run_atlas exited; CPU time 18857.449014
15:52:19 (3713203): called boinc_finish(0)

</stderr_txt>
]]>

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