Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:07:38 (20856): wrapper (7.7.26015): starting
12:07:38 (20856): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 12:07:38] Arguments: --nthreads 8
[2025-06-03 12:07:38] Threads: 8
[2025-06-03 12:07:38] Checking for CVMFS
[2025-06-03 12:07:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 12:07:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 12:07:39] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 12:07:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 12:07:40] 2.11.2.0 13959 31809 88524 146737 0 93 18882548 25165825 4480 130560 0 16758197 99.759 18107131 3361 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 12:07:40] CVMFS is ok
[2025-06-03 12:07:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 12:07:40] Checking for apptainer binary...
[2025-06-03 12:07:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 12:07:40] Running /usr/bin/apptainer --version
[2025-06-03 12:07:40] apptainer version 1.3.2-1.el7
[2025-06-03 12:07:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 12:07:42] cg-vwn499.simple-grid.lan
[2025-06-03 12:07:42] apptainer works
[2025-06-03 12:07:42] Set ATHENA_PROC_NUMBER=8
[2025-06-03 12:07:42] Set ATHENA_CORE_NUMBER=8
[2025-06-03 12:07:42] Starting ATLAS job with PandaID=6677418956
[2025-06-03 12:07:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 15:38:23]  *** The last 200 lines of the pilot log: ***
[2025-06-03 15:38:23] 2025-06-03 13:38:09,111 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 15:38:23] 2025-06-03 13:38:09,111 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 15:38:23] 2025-06-03 13:38:09,111 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 15:38:23] 2025-06-03 13:38:09,111 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 15:38:23] 2025-06-03 13:38:09,116 | INFO     | fitting pss+swap vs Time
[2025-06-03 15:38:23] 2025-06-03 13:38:09,116 | INFO     | sum of square deviations: 2370641658.0
[2025-06-03 15:38:23] 2025-06-03 13:38:09,118 | INFO     | sum of deviations: 33783453161.000008
[2025-06-03 15:38:23] 2025-06-03 13:38:09,118 | INFO     | mean x: 1748951884.0
[2025-06-03 15:38:23] 2025-06-03 13:38:09,118 | INFO     | mean y: 2483195.9086294416
[2025-06-03 15:38:23] 2025-06-03 13:38:09,118 | INFO     | -- intersect: -24921416143.56578
[2025-06-03 15:38:23] 2025-06-03 13:38:09,118 | INFO     | intersect: -24921416143.56578
[2025-06-03 15:38:23] 2025-06-03 13:38:09,119 | INFO     | chi2: 6.859863573467428
[2025-06-03 15:38:23] 2025-06-03 13:38:09,119 | INFO     | sum of square deviations: 2194675568.0
[2025-06-03 15:38:23] 2025-06-03 13:38:09,121 | INFO     | sum of deviations: 46465202582.5
[2025-06-03 15:38:23] 2025-06-03 13:38:09,121 | INFO     | mean x: 1748951731.5
[2025-06-03 15:38:23] 2025-06-03 13:38:09,121 | INFO     | mean y: 2493954.671875
[2025-06-03 15:38:23] 2025-06-03 13:38:09,121 | INFO     | -- intersect: -37025938719.41968
[2025-06-03 15:38:23] 2025-06-03 13:38:09,121 | INFO     | intersect: -37025938719.41968
[2025-06-03 15:38:23] 2025-06-03 13:38:09,121 | INFO     | chi2: 6.166534904756146
[2025-06-03 15:38:23] 2025-06-03 13:38:09,122 | INFO     | current chi2=6.166534904756146 (change=10.107032906498867 %)
[2025-06-03 15:38:23] 2025-06-03 13:38:09,122 | INFO     | right removable region: 191
[2025-06-03 15:38:23] 2025-06-03 13:38:09,122 | INFO     | sum of square deviations: 2194675568.0
[2025-06-03 15:38:23] 2025-06-03 13:38:09,124 | INFO     | sum of deviations: -35145530548.50001
[2025-06-03 15:38:23] 2025-06-03 13:38:09,124 | INFO     | mean x: 1748952036.5
[2025-06-03 15:38:23] 2025-06-03 13:38:09,124 | INFO     | mean y: 2542868.7239583335
[2025-06-03 15:38:23] 2025-06-03 13:38:09,124 | INFO     | -- intersect: 28010257595.638004
[2025-06-03 15:38:23] 2025-06-03 13:38:09,124 | INFO     | intersect: 28010257595.638004
[2025-06-03 15:38:23] 2025-06-03 13:38:09,124 | INFO     | chi2: 1.993771060153939
[2025-06-03 15:38:23] 2025-06-03 13:38:09,124 | INFO     | current chi2=1.993771060153939 (change=70.93570391304218 %)
[2025-06-03 15:38:23] 2025-06-03 13:38:09,125 | INFO     | sum of square deviations: 2027639878.0
[2025-06-03 15:38:23] 2025-06-03 13:38:09,126 | INFO     | sum of deviations: -62711654754.0
[2025-06-03 15:38:23] 2025-06-03 13:38:09,126 | INFO     | mean x: 1748952189.0
[2025-06-03 15:38:23] 2025-06-03 13:38:09,126 | INFO     | mean y: 2567836.064171123
[2025-06-03 15:38:23] 2025-06-03 13:38:09,126 | INFO     | -- intersect: 54094858606.16144
[2025-06-03 15:38:23] 2025-06-03 13:38:09,126 | INFO     | intersect: 54094858606.16144
[2025-06-03 15:38:23] 2025-06-03 13:38:09,127 | INFO     | chi2: 0.9704939834836358
[2025-06-03 15:38:23] 2025-06-03 13:38:09,127 | INFO     | current chi2=0.9704939834836358 (change=51.323699953358535 %)
[2025-06-03 15:38:23] 2025-06-03 13:38:09,127 | INFO     | sum of square deviations: 1869302025.5
[2025-06-03 15:38:23] 2025-06-03 13:38:09,128 | INFO     | sum of deviations: -62138166151.49999
[2025-06-03 15:38:23] 2025-06-03 13:38:09,128 | INFO     | mean x: 1748952341.5
[2025-06-03 15:38:23] 2025-06-03 13:38:09,128 | INFO     | mean y: 2567231.631868132
[2025-06-03 15:38:23] 2025-06-03 13:38:09,129 | INFO     | -- intersect: 58140144629.33098
[2025-06-03 15:38:23] 2025-06-03 13:38:09,129 | INFO     | intersect: 58140144629.33098
[2025-06-03 15:38:23] 2025-06-03 13:38:09,129 | INFO     | chi2: 0.9458793765292198
[2025-06-03 15:38:23] 2025-06-03 13:38:09,129 | INFO     | current chi2=0.9458793765292198 (change=2.536296707998192 %)
[2025-06-03 15:38:23] 2025-06-03 13:38:09,129 | INFO     | left removable region: 30
[2025-06-03 15:38:23] 2025-06-03 13:38:09,129 | INFO     | sum of square deviations: 1294014960.0
[2025-06-03 15:38:23] 2025-06-03 13:38:09,130 | INFO     | sum of deviations: -34255444138.000004
[2025-06-03 15:38:23] 2025-06-03 13:38:09,130 | INFO     | mean x: 1748952616.0
[2025-06-03 15:38:23] 2025-06-03 13:38:09,131 | INFO     | mean y: 2566059.602484472
[2025-06-03 15:38:23] 2025-06-03 13:38:09,131 | INFO     | -- intersect: 46301218308.102745
[2025-06-03 15:38:23] 2025-06-03 13:38:09,131 | INFO     | intersect: 46301218308.102745
[2025-06-03 15:38:23] 2025-06-03 13:38:09,131 | INFO     | chi2: 0.15200935754400782
[2025-06-03 15:38:23] 2025-06-03 13:38:09,131 | INFO     | -- intersect: 46301218308.102745
[2025-06-03 15:38:23] 2025-06-03 13:38:09,131 | INFO     | current memory leak: -26.47 B/s (using 161 data points, chi2=0.15)
[2025-06-03 15:38:23] 2025-06-03 13:38:09,132 | INFO     | ..............................
[2025-06-03 15:38:23] 2025-06-03 13:38:09,132 | INFO     | . Timing measurements:
[2025-06-03 15:38:23] 2025-06-03 13:38:09,132 | INFO     | . get job = 0 s
[2025-06-03 15:38:23] 2025-06-03 13:38:09,133 | INFO     | . initial setup = 3 s
[2025-06-03 15:38:23] 2025-06-03 13:38:09,133 | INFO     | . payload setup = 130 s
[2025-06-03 15:38:23] 2025-06-03 13:38:09,133 | INFO     | . stage-in = 0 s
[2025-06-03 15:38:23] 2025-06-03 13:38:09,133 | INFO     | . payload execution = 12115 s
[2025-06-03 15:38:23] 2025-06-03 13:38:09,133 | INFO     | . stage-out = 1 s
[2025-06-03 15:38:23] 2025-06-03 13:38:09,133 | INFO     | . log creation = 0 s
[2025-06-03 15:38:23] 2025-06-03 13:38:09,133 | INFO     | ..............................
[2025-06-03 15:38:23] 2025-06-03 13:38:09,463 | INFO     | 
[2025-06-03 15:38:23] 2025-06-03 13:38:09,463 | INFO     | job summary report
[2025-06-03 15:38:23] 2025-06-03 13:38:09,464 | INFO     | --------------------------------------------------
[2025-06-03 15:38:23] 2025-06-03 13:38:09,464 | INFO     | PanDA job id: 6677418956
[2025-06-03 15:38:23] 2025-06-03 13:38:09,464 | INFO     | task id: 45006595
[2025-06-03 15:38:23] 2025-06-03 13:38:09,464 | INFO     | errors: (none)
[2025-06-03 15:38:23] 2025-06-03 13:38:09,464 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 15:38:23] 2025-06-03 13:38:09,464 | INFO     | pilot state: finished 
[2025-06-03 15:38:23] 2025-06-03 13:38:09,464 | INFO     | transexitcode: 0
[2025-06-03 15:38:23] 2025-06-03 13:38:09,464 | INFO     | exeerrorcode: 0
[2025-06-03 15:38:23] 2025-06-03 13:38:09,464 | INFO     | exeerrordiag: 
[2025-06-03 15:38:23] 2025-06-03 13:38:09,464 | INFO     | exitcode: 0
[2025-06-03 15:38:23] 2025-06-03 13:38:09,464 | INFO     | exitmsg: OK
[2025-06-03 15:38:23] 2025-06-03 13:38:09,464 | INFO     | cpuconsumptiontime: 43117 s
[2025-06-03 15:38:23] 2025-06-03 13:38:09,464 | INFO     | nevents: 400
[2025-06-03 15:38:23] 2025-06-03 13:38:09,465 | INFO     | neventsw: 0
[2025-06-03 15:38:23] 2025-06-03 13:38:09,465 | INFO     | pid: 1326
[2025-06-03 15:38:23] 2025-06-03 13:38:09,465 | INFO     | pgrp: 1326
[2025-06-03 15:38:23] 2025-06-03 13:38:09,465 | INFO     | corecount: 8
[2025-06-03 15:38:23] 2025-06-03 13:38:09,465 | INFO     | event service: False
[2025-06-03 15:38:23] 2025-06-03 13:38:09,465 | INFO     | sizes: {0: 2405011, 1: 2405210, 12: 2405210, 23: 2405238, 33: 2405266, 44: 2405322, 55: 2405478, 66: 2405506, 76: 2405534, 86: 2405796, 87: 2405824, 12249: 2435097
[2025-06-03 15:38:23] 2025-06-03 13:38:09,465 | INFO     | --------------------------------------------------
[2025-06-03 15:38:23] 2025-06-03 13:38:09,465 | INFO     | 
[2025-06-03 15:38:23] 2025-06-03 13:38:09,465 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-06-03 15:38:23] 2025-06-03 13:38:09,520 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 15:38:23] 2025-06-03 13:38:09,520 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 15:38:23] 2025-06-03 13:38:09,520 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 15:38:23] 2025-06-03 13:38:09,520 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 15:38:23] 2025-06-03 13:38:09,521 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 15:38:23] 2025-06-03 13:38:09,521 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 15:38:23] 2025-06-03 13:38:09,521 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 15:38:23] 2025-06-03 13:38:09,521 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 15:38:23] 2025-06-03 13:38:09,521 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 15:38:23] 2025-06-03 13:38:09,521 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 15:38:23] 2025-06-03 13:38:09,521 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 15:38:23] 2025-06-03 13:38:09,521 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 15:38:23] 2025-06-03 13:38:09,521 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 15:38:23] 2025-06-03 13:38:09,521 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 15:38:23] 2025-06-03 13:38:09,521 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 15:38:23] 2025-06-03 13:38:09,521 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 15:38:23] 2025-06-03 13:38:09,521 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 15:38:23] 2025-06-03 13:38:09,522 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 15:38:23] 2025-06-03 13:38:09,522 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 15:38:23] 2025-06-03 13:38:09,522 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 15:38:23] 2025-06-03 13:38:09,522 | INFO     | job 6677418956 has completed (purged errors)
[2025-06-03 15:38:23] 2025-06-03 13:38:09,522 | INFO     | overall cleanup function is called
[2025-06-03 15:38:23] 2025-06-03 13:38:10,530 | INFO     | --- collectZombieJob: --- 10, [1326]
[2025-06-03 15:38:23] 2025-06-03 13:38:10,531 | INFO     | zombie collector waiting for pid 1326
[2025-06-03 15:38:23] 2025-06-03 13:38:10,531 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 15:38:23] 2025-06-03 13:38:10,531 | INFO     | collected zombie processes
[2025-06-03 15:38:23] 2025-06-03 13:38:10,531 | INFO     | will attempt to kill all subprocesses of pid=1326
[2025-06-03 15:38:23] 2025-06-03 13:38:10,616 | INFO     | process IDs to be killed: [1326] (in reverse order)
[2025-06-03 15:38:23] 2025-06-03 13:38:10,712 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 15:38:23] 2025-06-03 13:38:10,712 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 15:38:23] 2025-06-03 13:38:10,715 | INFO     | did not find any defunct processes belonging to 1326
[2025-06-03 15:38:23] 2025-06-03 13:38:10,717 | INFO     | did not find any defunct processes belonging to 1326
[2025-06-03 15:38:23] 2025-06-03 13:38:10,717 | INFO     | ready for new job
[2025-06-03 15:38:23] 2025-06-03 13:38:10,718 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 15:38:23] 2025-06-03 13:38:10,719 | INFO     | **************************************
[2025-06-03 15:38:23] 2025-06-03 13:38:10,719 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 15:38:23] 2025-06-03 13:38:10,719 | INFO     | **************************************
[2025-06-03 15:38:23] 2025-06-03 13:38:10,720 | INFO     | 
[2025-06-03 15:38:23] 2025-06-03 13:38:10,720 | INFO     | pilot is running in a VM
[2025-06-03 15:38:23] 2025-06-03 13:38:10,720 | INFO     | architecture information:
[2025-06-03 15:38:23] 2025-06-03 13:38:10,721 | INFO     | executing command: cat /etc/os-release
[2025-06-03 15:38:23] 2025-06-03 13:38:10,752 | INFO     | cat /etc/os-release:
[2025-06-03 15:38:23] NAME="CentOS Linux"
[2025-06-03 15:38:23] VERSION="7 (Core)"
[2025-06-03 15:38:23] ID="centos"
[2025-06-03 15:38:23] ID_LIKE="rhel fedora"
[2025-06-03 15:38:23] VERSION_ID="7"
[2025-06-03 15:38:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 15:38:23] ANSI_COLOR="0;31"
[2025-06-03 15:38:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 15:38:23] HOME_URL="https://www.centos.org/"
[2025-06-03 15:38:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 15:38:23] 
[2025-06-03 15:38:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 15:38:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 15:38:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 15:38:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 15:38:23] 
[2025-06-03 15:38:23] 2025-06-03 13:38:10,753 | INFO     | **************************************
[2025-06-03 15:38:23] 2025-06-03 13:38:11,255 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-06-03 15:38:23] 2025-06-03 13:38:11,292 | INFO     | sufficient remaining disk space (497097375744 B)
[2025-06-03 15:38:23] 2025-06-03 13:38:11,292 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 15:38:23] 2025-06-03 13:38:11,293 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 15:38:23] 2025-06-03 13:38:11,293 | INFO     | update_server=False
[2025-06-03 15:38:23] 2025-06-03 13:38:11,293 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 15:38:23] 2025-06-03 13:38:11,362 | INFO     | all data control threads have been joined
[2025-06-03 15:38:23] 2025-06-03 13:38:11,564 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-03 15:38:23] 2025-06-03 13:38:11,564 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-03 15:38:23] 2025-06-03 13:38:11,565 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 15:38:23] 2025-06-03 13:38:11,565 | INFO     | will abort loop
[2025-06-03 15:38:23] 2025-06-03 13:38:11,692 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 15:38:23] 2025-06-03 13:38:11,730 | INFO     | all payload control threads have been joined
[2025-06-03 15:38:23] 2025-06-03 13:38:12,002 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 15:38:23] 2025-06-03 13:38:12,076 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 15:38:23] 2025-06-03 13:38:12,077 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 15:38:23] 2025-06-03 13:38:12,077 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 15:38:23] 2025-06-03 13:38:12,300 | INFO     | [job] retrieve thread has finished
[2025-06-03 15:38:23] 2025-06-03 13:38:12,368 | INFO     | [data] control thread has finished
[2025-06-03 15:38:23] 2025-06-03 13:38:12,442 | INFO     | [job] validate thread has finished
[2025-06-03 15:38:23] 2025-06-03 13:38:12,569 | INFO     | [job] job monitor thread has finished
[2025-06-03 15:38:23] 2025-06-03 13:38:12,597 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 15:38:23] 2025-06-03 13:38:12,707 | INFO     | [payload] failed_post thread has finished
[2025-06-03 15:38:23] 2025-06-03 13:38:12,726 | INFO     | all job control threads have been joined
[2025-06-03 15:38:23] 2025-06-03 13:38:12,735 | INFO     | [payload] control thread has finished
[2025-06-03 15:38:23] 2025-06-03 13:38:12,976 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 15:38:23] 2025-06-03 13:38:13,153 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 15:38:23] 2025-06-03 13:38:13,185 | INFO     | [payload] validate_post thread has finished
[2025-06-03 15:38:23] 2025-06-03 13:38:13,325 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 15:38:23] 2025-06-03 13:38:13,707 | INFO     | [data] copytool_in thread has finished
[2025-06-03 15:38:23] 2025-06-03 13:38:13,731 | INFO     | [job] control thread has finished
[2025-06-03 15:38:23] 2025-06-03 13:38:14,007 | INFO     | [data] copytool_out thread has finished
[2025-06-03 15:38:23] 2025-06-03 13:38:14,257 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 15:38:23] 2025-06-03 13:38:15,263 | INFO     | [job] queue monitor thread has finished
[2025-06-03 15:38:23] 2025-06-03 13:38:15,700 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 15:38:23] 2025-06-03 13:38:17,756 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140208331552576)>', '<ExcThread(monitor, started 140207596762880)>']
[2025-06-03 15:38:23] 2025-06-03 13:38:18,112 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 15:38:23] 2025-06-03 13:38:18,112 | INFO     | [monitor] control thread has ended
[2025-06-03 15:38:23] 2025-06-03 13:38:22,781 | INFO     | all workflow threads have been joined
[2025-06-03 15:38:23] 2025-06-03 13:38:22,782 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 15:38:23] 2025-06-03 13:38:22,782 | INFO     | traces error code: 0
[2025-06-03 15:38:23] 2025-06-03 13:38:22,782 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 15:38:23] 2025-06-03 13:38:22,983 [wrapper] ==== pilot stdout END ====
[2025-06-03 15:38:23] 2025-06-03 13:38:23,011 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 15:38:23] 2025-06-03 13:38:23,019 [wrapper] pilotpid: 27059
[2025-06-03 15:38:23] 2025-06-03 13:38:23,029 [wrapper] Pilot exit status: 0
[2025-06-03 15:38:23] 2025-06-03 13:38:23,069 [wrapper] pandaids: 6677418956
[2025-06-03 15:38:23] 2025-06-03 13:38:23,173 [wrapper] cleanup supervisor_pilot 25585 27060
[2025-06-03 15:38:23] 2025-06-03 13:38:23,192 [wrapper] Test setup, not cleaning
[2025-06-03 15:38:23] 2025-06-03 13:38:23,195 [wrapper] apfmon messages muted
[2025-06-03 15:38:23] 2025-06-03 13:38:23,200 [wrapper] ==== wrapper stdout END ====
[2025-06-03 15:38:23] 2025-06-03 13:38:23,203 [wrapper] ==== wrapper stderr END ====
[2025-06-03 15:38:23]  *** Error codes and diagnostics ***
[2025-06-03 15:38:23]     "exeErrorCode": 0,
[2025-06-03 15:38:23]     "exeErrorDiag": "",
[2025-06-03 15:38:23]     "pilotErrorCode": 0,
[2025-06-03 15:38:23]     "pilotErrorDiag": "",
[2025-06-03 15:38:23]  *** Listing of results directory ***
[2025-06-03 15:38:23] total 389428
[2025-06-03 15:38:23] -rw-r--r--. 1 boinc boinc    495897 Jun  3 00:49 pilot3.tar.gz
[2025-06-03 15:38:23] -rwx------. 1 boinc boinc     37140 Jun  3 00:58 runpilot2-wrapper.sh
[2025-06-03 15:38:23] -rw-r--r--. 1 boinc boinc      5111 Jun  3 00:58 queuedata.json
[2025-06-03 15:38:23] -rw-r--r--. 1 boinc boinc       100 Jun  3 12:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 15:38:23] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 12:07 run_atlas
[2025-06-03 15:38:23] -rw-r--r--. 1 boinc boinc       105 Jun  3 12:07 job.xml
[2025-06-03 15:38:23] -rw-r--r--. 1 boinc boinc      6392 Jun  3 12:07 init_data.xml
[2025-06-03 15:38:23] -rw-r--r--. 2 boinc boinc 216191772 Jun  3 12:07 EVNT.45006593._000551.pool.root.1
[2025-06-03 15:38:23] -rw-r--r--. 2 boinc boinc     15093 Jun  3 12:07 start_atlas.sh
[2025-06-03 15:38:23] drwxrwx--x. 2 boinc boinc        68 Jun  3 12:07 shared
[2025-06-03 15:38:23] -rw-r--r--. 2 boinc boinc    508880 Jun  3 12:07 input.tar.gz
[2025-06-03 15:38:23] -rw-r--r--. 1 boinc boinc         0 Jun  3 12:07 boinc_lockfile
[2025-06-03 15:38:23] -rw-r--r--. 1 boinc boinc      2524 Jun  3 12:07 pandaJob.out
[2025-06-03 15:38:23] -rw-------. 1 boinc boinc    985490 Jun  3 12:10 agis_schedconf.cvmfs.json
[2025-06-03 15:38:23] drwx------. 4 boinc boinc      4096 Jun  3 12:10 pilot3
[2025-06-03 15:38:23] -rw-------. 1 boinc boinc 175907448 Jun  3 15:37 HITS.45006595._013760.pool.root.1
[2025-06-03 15:38:23] -rw-r--r--. 1 boinc boinc       530 Jun  3 15:37 boinc_task_state.xml
[2025-06-03 15:38:23] -rw-------. 1 boinc boinc        95 Jun  3 15:37 pilot_heartbeat.json
[2025-06-03 15:38:23] -rw-------. 1 boinc boinc      1015 Jun  3 15:37 memory_monitor_summary.json
[2025-06-03 15:38:23] -rw-------. 1 boinc boinc   1603667 Jun  3 15:37 agis_ddmendpoints.agis.ALL.json
[2025-06-03 15:38:23] -rw-------. 1 boinc boinc    362435 Jun  3 15:37 log.45006595._013760.job.log.tgz.1
[2025-06-03 15:38:23] -rw-------. 1 boinc boinc      7703 Jun  3 15:38 heartbeat.json
[2025-06-03 15:38:23] -rw-r--r--. 1 boinc boinc      8192 Jun  3 15:38 boinc_mmap_file
[2025-06-03 15:38:23] -rw-r--r--. 1 boinc boinc        28 Jun  3 15:38 wrapper_checkpoint.txt
[2025-06-03 15:38:23] -rw-------. 1 boinc boinc      4602 Jun  3 15:38 pilotlog.txt
[2025-06-03 15:38:23] -rw-------. 1 boinc boinc   1064103 Jun  3 15:38 log.45006595._013760.job.log.1
[2025-06-03 15:38:23] -rw-------. 1 boinc boinc       357 Jun  3 15:38 output.list
[2025-06-03 15:38:23] -rw-r--r--. 1 boinc boinc       620 Jun  3 15:38 runtime_log
[2025-06-03 15:38:23] -rw-------. 1 boinc boinc   1443840 Jun  3 15:38 result.tar.gz
[2025-06-03 15:38:23] -rw-r--r--. 1 boinc boinc      8659 Jun  3 15:38 runtime_log.err
[2025-06-03 15:38:23] -rw-------. 1 boinc boinc       656 Jun  3 15:38 cUUNDmHITg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmDnWKDmQtFpVm.diag
[2025-06-03 15:38:23] -rw-r--r--. 1 boinc boinc     20486 Jun  3 15:38 stderr.txt
[2025-06-03 15:38:23] HITS file was successfully produced:
[2025-06-03 15:38:23] -rw-------. 1 boinc boinc 175907448 Jun  3 15:37 shared/HITS.pool.root.1
[2025-06-03 15:38:23]  *** Contents of shared directory: ***
[2025-06-03 15:38:23] total 384844
[2025-06-03 15:38:23] -rw-r--r--. 2 boinc boinc 216191772 Jun  3 12:07 ATLAS.root_0
[2025-06-03 15:38:23] -rw-r--r--. 2 boinc boinc     15093 Jun  3 12:07 start_atlas.sh
[2025-06-03 15:38:23] -rw-r--r--. 2 boinc boinc    508880 Jun  3 12:07 input.tar.gz
[2025-06-03 15:38:23] -rw-------. 1 boinc boinc 175907448 Jun  3 15:37 HITS.pool.root.1
[2025-06-03 15:38:23] -rw-------. 1 boinc boinc   1443840 Jun  3 15:38 result.tar.gz
15:38:25 (20856): run_atlas exited; CPU time 43273.475269
15:38:25 (20856): called boinc_finish(0)

</stderr_txt>
]]>

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