Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-04 05:57:07 (3704): Detected: vboxwrapper 26206
2025-06-04 05:57:07 (3704): Detected: BOINC client v8.0.2
2025-06-04 05:57:08 (3704): Detected: VirtualBox VboxManage Interface (Version: 6.1.2)
2025-06-04 05:57:08 (3704): Successfully copied 'init_data.xml' to the shared directory.
2025-06-04 05:57:08 (3704): Create VM. (boinc_5590b7395718b4e6, slot#3)
2025-06-04 05:57:09 (3704): Setting Memory Size for VM. (4400MB)
2025-06-04 05:57:09 (3704): Setting CPU Count for VM. (4)
2025-06-04 05:57:10 (3704): Setting Chipset Options for VM.
2025-06-04 05:57:10 (3704): Setting Graphics Controller Options for VM.
2025-06-04 05:57:10 (3704): Setting Boot Options for VM.
2025-06-04 05:57:10 (3704): Setting Network Configuration for NAT.
2025-06-04 05:57:11 (3704): Enabling VM Network Access.
2025-06-04 05:57:11 (3704): Disabling USB Support for VM.
2025-06-04 05:57:11 (3704): Disabling COM Port Support for VM.
2025-06-04 05:57:11 (3704): Disabling LPT Port Support for VM.
2025-06-04 05:57:12 (3704): Disabling Audio Support for VM.
2025-06-04 05:57:12 (3704): Disabling Clipboard Support for VM.
2025-06-04 05:57:13 (3704): Disabling Drag and Drop Support for VM.
2025-06-04 05:57:13 (3704): Adding storage controller(s) to VM.
2025-06-04 05:57:13 (3704): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-04 05:57:14 (3704): Adding VirtualBox Guest Additions to VM.
2025-06-04 05:57:15 (3704): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-04 05:57:15 (3704): forwarding host port 54754 to guest port 80
2025-06-04 05:57:15 (3704): Enabling remote desktop for VM.
2025-06-04 05:57:16 (3704): Required extension pack not installed, remote desktop not enabled.
2025-06-04 05:57:16 (3704): Enabling shared directory for VM.
2025-06-04 05:57:16 (3704): Starting VM using VBoxManage interface. (boinc_5590b7395718b4e6, slot#3)
2025-06-04 05:57:20 (3704): Successfully started VM. (PID = '1700')
2025-06-04 05:57:20 (3704): Reporting VM Process ID to BOINC.
2025-06-04 05:57:20 (3704): Guest Log: BIOS: VirtualBox 6.1.2
2025-06-04 05:57:20 (3704): Guest Log: CPUID EDX: 0x178bfbff
2025-06-04 05:57:20 (3704): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-04 05:57:20 (3704): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-04 05:57:20 (3704): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-04 05:57:20 (3704): Detected: Web Application Enabled (http://localhost:54754)
2025-06-04 05:57:20 (3704): Preference change detected
2025-06-04 05:57:20 (3704): Setting CPU throttle for VM. (90%)
2025-06-04 05:57:21 (3704): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 05:57:22 (3704): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-04 05:57:22 (3704): Guest Log: BIOS: Booting from Hard Disk...
2025-06-04 05:57:25 (3704): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-04 05:57:25 (3704): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-04 05:57:25 (3704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-04 05:57:25 (3704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-04 05:57:25 (3704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-04 05:57:25 (3704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-04 05:57:25 (3704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-04 05:57:25 (3704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-04 05:57:25 (3704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-04 05:57:25 (3704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-04 05:57:25 (3704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-04 05:57:25 (3704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-04 05:57:25 (3704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-04 05:57:25 (3704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-04 05:57:25 (3704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-04 05:57:25 (3704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-04 05:57:25 (3704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-04 05:57:25 (3704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-04 05:57:25 (3704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-04 05:57:25 (3704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-04 05:57:25 (3704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-04 05:57:25 (3704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-04 05:57:25 (3704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-04 05:57:25 (3704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-04 05:57:25 (3704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-04 05:57:25 (3704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-04 05:57:25 (3704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-04 05:57:25 (3704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-04 05:57:25 (3704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-04 05:57:25 (3704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-04 05:57:25 (3704): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-04 05:57:25 (3704): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-04 05:57:31 (3704): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-04 05:57:31 (3704): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-04 05:57:42 (3704): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-04 05:57:42 (3704): Guest Log: 00:00:00.000124 main     Log opened 2025-06-04T05:57:40.245279000Z
2025-06-04 05:57:42 (3704): Guest Log: 00:00:00.000192 main     OS Product: Linux
2025-06-04 05:57:42 (3704): Guest Log: 00:00:00.000219 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-04 05:57:42 (3704): Guest Log: 00:00:00.000241 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-04 05:57:42 (3704): Guest Log: 00:00:00.000271 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-04 05:57:42 (3704): Guest Log: 00:00:00.000272 main     Process ID: 1298
2025-06-04 05:57:42 (3704): Guest Log: 00:00:00.000272 main     Package type: LINUX_64BITS_GENERIC
2025-06-04 05:57:42 (3704): Guest Log: 00:00:00.002527 main     5.2.32 r132073 started. Verbose level = 0
2025-06-04 05:57:42 (3704): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-04 05:57:42 (3704): Guest Log: [INFO] Mounting shared directory
2025-06-04 05:57:42 (3704): Guest Log: [INFO] Checking for init_data.xml
2025-06-04 05:57:52 (3704): Guest Log: 00:00:10.007415 timesync vgsvcTimeSyncWorker: Radical guest time change: -34 187 932 947 000ns (GuestNow=1 748 982 472 317 296 000 ns GuestLast=1 749 016 660 250 243 000 ns fSetTimeLastLoop=true )
2025-06-04 05:57:54 (3704): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-04 05:57:54 (3704): Guest Log: [INFO] Detected branch: prod
2025-06-04 05:57:55 (3704): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-04 05:57:55 (3704): Guest Log: Copying input files
2025-06-04 05:58:00 (3704): Guest Log: Copied input files into RunAtlas.
2025-06-04 05:58:00 (3704): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-04 05:58:00 (3704): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-04 05:58:00 (3704): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-04 05:58:00 (3704): Guest Log: Further information can be found at the LHC@home message board.
2025-06-04 05:58:21 (3704): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-04 05:58:22 (3704): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-04 05:58:22 (3704): Guest Log: 2.6.3.0 1575 0 30192 146755 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-06-04 05:58:24 (3704): Guest Log: copied the webapp to /var/www
2025-06-04 05:58:24 (3704): Guest Log: ATHENA_PROC_NUMBER=4
2025-06-04 05:58:24 (3704): Guest Log: ATHENA_CORE_NUMBER=4
2025-06-04 05:58:25 (3704): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-04 05:58:25 (3704): Guest Log:  *** Starting ATLAS job. (PandaID=6677418750 taskID=45006595) ***
2025-06-04 06:57:53 (3704): VM state change detected. (old = 'running', new = 'paused')
2025-06-04 08:05:28 (3704): VM state change detected. (old = 'paused', new = 'running')
2025-06-04 08:05:29 (3704): Guest Log: 01:00:11.713357 timesync vgsvcTimeSyncWorker: Radical host time change: 4 065 228 000 000ns (HostNow=1 748 990 129 250 000 000 ns HostLast=1 748 986 064 022 000 000 ns)
2025-06-04 08:05:39 (3704): Guest Log: 01:00:21.717871 timesync vgsvcTimeSyncWorker: Radical guest time change: 4 065 231 616 000ns (GuestNow=1 748 990 139 254 567 000 ns GuestLast=1 748 986 074 022 951 000 ns fSetTimeLastLoop=true )
2025-06-04 08:45:01 (3704): Status Report: Elapsed Time: '6000.000000'
2025-06-04 08:45:01 (3704): Status Report: CPU Time: '18649.312500'
2025-06-04 09:11:53 (3704): VM state change detected. (old = 'running', new = 'paused')
2025-06-05 04:48:27 (3704): VM state change detected. (old = 'paused', new = 'running')
2025-06-05 04:48:34 (3704): Guest Log: 02:06:43.102458 timesync vgsvcTimeSyncWorker: Radical host time change: 70 603 384 000 000ns (HostNow=1 749 064 714 022 000 000 ns HostLast=1 748 994 110 638 000 000 ns)
2025-06-05 04:48:44 (3704): Guest Log: 02:06:53.108861 timesync vgsvcTimeSyncWorker: Radical guest time change: 70 603 389 620 000ns (GuestNow=1 749 064 724 028 474 000 ns GuestLast=1 748 994 120 638 854 000 ns fSetTimeLastLoop=true )
2025-06-05 05:39:25 (3704): Guest Log:  *** Job finished ***
2025-06-05 05:39:25 (3704): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-05 05:39:25 (3704): Guest Log: 2025-06-04 20:09:12,249 | INFO     | [data] copytool_out thread has finished
2025-06-05 05:39:25 (3704): Guest Log: 2025-06-04 20:09:12,750 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-06-05 05:39:25 (3704): Guest Log: 2025-06-04 20:09:16,758 | INFO     | [data] queue_monitor thread has finished
2025-06-05 05:39:25 (3704): Guest Log: 2025-06-04 20:09:17,082 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140502136952640)>', '<ExcThread(monitor, started 140501382584064)>']
2025-06-05 05:39:25 (3704): Guest Log: 2025-06-04 20:09:17,939 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-05 05:39:25 (3704): Guest Log: 2025-06-04 20:09:17,939 | INFO     | [monitor] control thread has ended
2025-06-05 05:39:25 (3704): Guest Log: 2025-06-04 20:09:22,106 | INFO     | all workflow threads have been joined
2025-06-05 05:39:25 (3704): Guest Log: 2025-06-04 20:09:22,106 | INFO     | end of generic workflow (traces error code: 0)
2025-06-05 05:39:25 (3704): Guest Log: 2025-06-04 20:09:22,106 | INFO     | traces error code: 0
2025-06-05 05:39:25 (3704): Guest Log: 2025-06-04 20:09:22,106 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-05 05:39:25 (3704): Guest Log: 2025-06-04 20:09:22,222 [wrapper] ==== pilot stdout END ====
2025-06-05 05:39:25 (3704): Guest Log: 2025-06-04 20:09:22,226 [wrapper] ==== wrapper stdout RESUME ====
2025-06-05 05:39:25 (3704): Guest Log: 2025-06-04 20:09:22,230 [wrapper] pilotpid: 5904
2025-06-05 05:39:25 (3704): Guest Log: 2025-06-04 20:09:22,234 [wrapper] Pilot exit status: 0
2025-06-05 05:39:25 (3704): Guest Log: 2025-06-04 20:09:24,175 [wrapper] pandaids: 6677418750
2025-06-05 05:39:25 (3704): Guest Log: 2025-06-04 20:09:24,202 [wrapper] cleanup supervisor_pilot  9173 5905
2025-06-05 05:39:25 (3704): Guest Log: 2025-06-04 20:09:24,207 [wrapper] Test setup, not cleaning
2025-06-05 05:39:25 (3704): Guest Log: 2025-06-04 20:09:24,212 [wrapper] apfmon messages muted
2025-06-05 05:39:25 (3704): Guest Log: 2025-06-04 20:09:24,216 [wrapper] ==== wrapper stdout END ====
2025-06-05 05:39:25 (3704): Guest Log: 2025-06-04 20:09:24,221 [wrapper] ==== wrapper stderr END ====
2025-06-05 05:39:25 (3704): Guest Log:  *** Error codes and diagnostics ***
2025-06-05 05:39:25 (3704): Guest Log:     "exeErrorCode": 0,
2025-06-05 05:39:25 (3704): Guest Log:     "exeErrorDiag": "",
2025-06-05 05:39:25 (3704): Guest Log:     "pilotErrorCode": 0,
2025-06-05 05:39:25 (3704): Guest Log:     "pilotErrorDiag": "",
2025-06-05 05:39:25 (3704): Guest Log:  *** Listing of results directory ***
2025-06-05 05:39:25 (3704): Guest Log: total 181732
2025-06-05 05:39:25 (3704): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  2 22:49 pilot3.tar.gz
2025-06-05 05:39:25 (3704): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  2 22:50 queuedata.json
2025-06-05 05:39:25 (3704): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  2 22:51 runpilot2-wrapper.sh
2025-06-05 05:39:25 (3704): Guest Log: -rwxr-xr-x. 1 atlas atlas      6358 Jun  3 20:27 init_data.xml
2025-06-05 05:39:25 (3704): Guest Log: -rwxr-xr-x. 1 atlas atlas    508885 Jun  3 20:27 input.tar.gz
2025-06-05 05:39:25 (3704): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  3 20:27 start_atlas.sh
2025-06-05 05:39:25 (3704): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  3 20:28 EVNT.45006593._000543.pool.root.1 -> /data/./ATLAS.root_0
2025-06-05 05:39:25 (3704): Guest Log: -rw-r--r--. 1 atlas atlas      2524 Jun  3 20:28 pandaJob.out
2025-06-05 05:39:25 (3704): Guest Log: -rw-------. 1 atlas atlas    986853 Jun  3 20:30 agis_schedconf.cvmfs.json
2025-06-05 05:39:25 (3704): Guest Log: drwx------. 4 atlas atlas      4096 Jun  3 20:31 pilot3
2025-06-05 05:39:25 (3704): Guest Log: -rw-------. 1 atlas atlas 180038069 Jun  4 20:08 HITS.45006595._013560.pool.root.1
2025-06-05 05:39:25 (3704): Guest Log: -rw-------. 1 atlas atlas      1033 Jun  4 20:08 memory_monitor_summary.json
2025-06-05 05:39:25 (3704): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  4 20:08 agis_ddmendpoints.agis.ALL.json
2025-06-05 05:39:25 (3704): Guest Log: -rw-------. 1 atlas atlas    283273 Jun  4 20:08 log.45006595._013560.job.log.tgz.1
2025-06-05 05:39:25 (3704): Guest Log: -rw-------. 1 atlas atlas      7729 Jun  4 20:09 heartbeat.json
2025-06-05 05:39:25 (3704): Guest Log: -rw-------. 1 atlas atlas        98 Jun  4 20:09 pilot_heartbeat.json
2025-06-05 05:39:25 (3704): Guest Log: -rw-------. 1 atlas atlas      4599 Jun  4 20:09 pilotlog.txt
2025-06-05 05:39:25 (3704): Guest Log: -rw-------. 1 atlas atlas    866250 Jun  4 20:09 log.45006595._013560.job.log.1
2025-06-05 05:39:25 (3704): Guest Log: -rw-------. 1 atlas atlas       357 Jun  4 20:09 output.list
2025-06-05 05:39:25 (3704): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  4 20:09 runtime_log
2025-06-05 05:39:25 (3704): Guest Log: -rw-------. 1 atlas atlas   1167360 Jun  4 20:09 result.tar.gz
2025-06-05 05:39:25 (3704): Guest Log: -rw-r--r--. 1 atlas atlas      8626 Jun  4 20:09 runtime_log.err
2025-06-05 05:39:25 (3704): Guest Log: -rw-------. 1 atlas atlas       667 Jun  4 20:09 0JjMDmIBTg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmz0gKDm9jSPRn.diag
2025-06-05 05:39:25 (3704): Guest Log: Looking for outputfile HITS.45006595._013560.pool.root.1
2025-06-05 05:39:25 (3704): Guest Log: HITS file was successfully produced
2025-06-05 05:39:25 (3704): Guest Log: -rw-------. 1 atlas atlas 180038069 Jun  4 20:08 /home/atlas/RunAtlas/HITS.45006595._013560.pool.root.1
2025-06-05 05:39:26 (3704): Guest Log: Successfully finished the ATLAS job!
2025-06-05 05:39:26 (3704): Guest Log: Copying the results back to the shared directory!
2025-06-05 05:39:26 (3704): Guest Log:  *** Contents of shared directory: ***
2025-06-05 05:39:26 (3704): Guest Log: total 387720
2025-06-05 05:39:26 (3704): Guest Log: -rwxrwxrwx. 1 root root 215279415 Jun  3 20:27 ATLAS.root_0
2025-06-05 05:39:26 (3704): Guest Log: -rwxrwxrwx. 1 root root 180038069 Jun  4 20:09 HITS.pool.root.1
2025-06-05 05:39:26 (3704): Guest Log: -rwxrwxrwx. 1 root root      6358 Jun  3 20:27 init_data.xml
2025-06-05 05:39:26 (3704): Guest Log: -rwxrwxrwx. 1 root root    508885 Jun  3 03:01 input.tar.gz
2025-06-05 05:39:26 (3704): Guest Log: -rwxrwxrwx. 1 root root   1167360 Jun  4 20:09 result.tar.gz
2025-06-05 05:39:26 (3704): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  3 03:01 start_atlas.sh
2025-06-05 05:39:26 (3704): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-05 05:39:26 (3704): VM Completion File Detected.
2025-06-05 05:39:26 (3704): Powering off VM.
2025-06-05 05:39:27 (3704): Successfully stopped VM.
2025-06-05 05:39:27 (3704): Deregistering VM. (boinc_5590b7395718b4e6, slot#3)
2025-06-05 05:39:27 (3704): Removing network bandwidth throttle group from VM.
2025-06-05 05:39:27 (3704): Removing VM from VirtualBox.
05:39:33 (3704): called boinc_finish(0)

</stderr_txt>
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