Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-06 18:24:40 (13912): Detected: vboxwrapper 26206
2025-06-06 18:24:40 (13912): Detected: BOINC client v8.0.2
2025-06-06 18:24:41 (13912): Detected: VirtualBox VboxManage Interface (Version: 6.1.2)
2025-06-06 18:24:41 (13912): Successfully copied 'init_data.xml' to the shared directory.
2025-06-06 18:24:42 (13912): Create VM. (boinc_e711672c68502080, slot#0)
2025-06-06 18:24:42 (13912): Setting Memory Size for VM. (4400MB)
2025-06-06 18:24:42 (13912): Setting CPU Count for VM. (4)
2025-06-06 18:24:43 (13912): Setting Chipset Options for VM.
2025-06-06 18:24:43 (13912): Setting Graphics Controller Options for VM.
2025-06-06 18:24:43 (13912): Setting Boot Options for VM.
2025-06-06 18:24:44 (13912): Setting Network Configuration for NAT.
2025-06-06 18:24:44 (13912): Enabling VM Network Access.
2025-06-06 18:24:44 (13912): Disabling USB Support for VM.
2025-06-06 18:24:44 (13912): Disabling COM Port Support for VM.
2025-06-06 18:24:45 (13912): Disabling LPT Port Support for VM.
2025-06-06 18:24:45 (13912): Disabling Audio Support for VM.
2025-06-06 18:24:45 (13912): Disabling Clipboard Support for VM.
2025-06-06 18:24:46 (13912): Disabling Drag and Drop Support for VM.
2025-06-06 18:24:46 (13912): Adding storage controller(s) to VM.
2025-06-06 18:24:47 (13912): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-06 18:24:48 (13912): Adding VirtualBox Guest Additions to VM.
2025-06-06 18:24:48 (13912): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-06 18:24:48 (13912): forwarding host port 59762 to guest port 80
2025-06-06 18:24:49 (13912): Enabling remote desktop for VM.
2025-06-06 18:24:49 (13912): Required extension pack not installed, remote desktop not enabled.
2025-06-06 18:24:49 (13912): Enabling shared directory for VM.
2025-06-06 18:24:49 (13912): Starting VM using VBoxManage interface. (boinc_e711672c68502080, slot#0)
2025-06-06 18:24:54 (13912): Successfully started VM. (PID = '13476')
2025-06-06 18:24:54 (13912): Reporting VM Process ID to BOINC.
2025-06-06 18:24:54 (13912): Guest Log: BIOS: VirtualBox 6.1.2
2025-06-06 18:24:54 (13912): Guest Log: CPUID EDX: 0x178bfbff
2025-06-06 18:24:54 (13912): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-06 18:24:54 (13912): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-06 18:24:54 (13912): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-06 18:24:54 (13912): Detected: Web Application Enabled (http://localhost:59762)
2025-06-06 18:24:54 (13912): Preference change detected
2025-06-06 18:24:54 (13912): Setting CPU throttle for VM. (90%)
2025-06-06 18:24:54 (13912): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-06 18:24:56 (13912): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-06 18:24:56 (13912): Guest Log: BIOS: Booting from Hard Disk...
2025-06-06 18:24:59 (13912): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-06 18:24:59 (13912): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-06 18:24:59 (13912): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-06 18:24:59 (13912): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-06 18:24:59 (13912): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-06 18:24:59 (13912): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-06 18:24:59 (13912): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-06 18:24:59 (13912): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-06 18:24:59 (13912): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-06 18:24:59 (13912): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-06 18:24:59 (13912): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-06 18:24:59 (13912): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-06 18:24:59 (13912): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-06 18:24:59 (13912): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-06 18:24:59 (13912): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-06 18:24:59 (13912): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-06 18:24:59 (13912): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-06 18:24:59 (13912): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-06 18:24:59 (13912): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-06 18:24:59 (13912): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-06 18:24:59 (13912): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-06 18:24:59 (13912): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-06 18:24:59 (13912): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-06 18:24:59 (13912): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-06 18:24:59 (13912): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-06 18:24:59 (13912): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-06 18:24:59 (13912): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-06 18:24:59 (13912): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-06 18:24:59 (13912): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-06 18:24:59 (13912): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-06 18:24:59 (13912): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-06 18:24:59 (13912): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-06 18:25:10 (13912): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-06 18:25:10 (13912): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-06 18:25:23 (13912): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-06 18:25:23 (13912): Guest Log: 00:00:00.000118 main     Log opened 2025-06-06T18:25:21.883785000Z
2025-06-06 18:25:23 (13912): Guest Log: 00:00:00.000188 main     OS Product: Linux
2025-06-06 18:25:23 (13912): Guest Log: 00:00:00.000218 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-06 18:25:23 (13912): Guest Log: 00:00:00.000240 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-06 18:25:23 (13912): Guest Log: 00:00:00.000262 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-06 18:25:23 (13912): Guest Log: 00:00:00.000263 main     Process ID: 1301
2025-06-06 18:25:23 (13912): Guest Log: 00:00:00.000264 main     Package type: LINUX_64BITS_GENERIC
2025-06-06 18:25:23 (13912): Guest Log: 00:00:00.002019 main     5.2.32 r132073 started. Verbose level = 0
2025-06-06 18:25:24 (13912): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-06 18:25:24 (13912): Guest Log: [INFO] Mounting shared directory
2025-06-06 18:25:24 (13912): Guest Log: [INFO] Checking for init_data.xml
2025-06-06 18:25:33 (13912): Guest Log: 00:00:10.022043 timesync vgsvcTimeSyncWorker: Radical guest time change: -34 188 573 849 000ns (GuestNow=1 749 200 133 313 418 000 ns GuestLast=1 749 234 321 887 267 000 ns fSetTimeLastLoop=true )
2025-06-06 18:25:40 (13912): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-06 18:25:40 (13912): Guest Log: [INFO] Detected branch: prod
2025-06-06 18:25:42 (13912): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-06 18:25:42 (13912): Guest Log: Copying input files
2025-06-06 18:25:50 (13912): Guest Log: Copied input files into RunAtlas.
2025-06-06 18:25:50 (13912): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-06 18:25:50 (13912): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-06 18:25:50 (13912): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-06 18:25:50 (13912): Guest Log: Further information can be found at the LHC@home message board.
2025-06-06 18:26:03 (13912): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-06 18:26:04 (13912): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-06 18:26:04 (13912): Guest Log: 2.6.3.0 1579 0 32168 146847 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-06-06 18:26:10 (13912): Guest Log: copied the webapp to /var/www
2025-06-06 18:26:10 (13912): Guest Log: ATHENA_PROC_NUMBER=4
2025-06-06 18:26:10 (13912): Guest Log: ATHENA_CORE_NUMBER=4
2025-06-06 18:26:11 (13912): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-06 18:26:11 (13912): Guest Log:  *** Starting ATLAS job. (PandaID=6677402675 taskID=45006595) ***
2025-06-06 19:25:05 (13912): VM state change detected. (old = 'running', new = 'paused')
2025-06-06 20:31:36 (13912): VM state change detected. (old = 'paused', new = 'running')
2025-06-06 20:31:45 (13912): Guest Log: 00:59:51.254928 timesync vgsvcTimeSyncWorker: Radical host time change: 4 000 998 000 000ns (HostNow=1 749 207 705 543 000 000 ns HostLast=1 749 203 704 545 000 000 ns)
2025-06-06 20:31:56 (13912): Guest Log: 01:00:01.256156 timesync vgsvcTimeSyncWorker: Radical guest time change: 4 000 998 262 000ns (GuestNow=1 749 207 715 544 282 000 ns GuestLast=1 749 203 714 546 020 000 ns fSetTimeLastLoop=true )
2025-06-06 21:11:30 (13912): Status Report: Elapsed Time: '6000.000000'
2025-06-06 21:11:30 (13912): Status Report: CPU Time: '18298.875000'
2025-06-06 21:46:33 (13912): VM state change detected. (old = 'running', new = 'paused')
2025-06-06 21:47:29 (13912): VM state change detected. (old = 'paused', new = 'running')
2025-06-06 22:34:31 (13912): Guest Log:  *** Job finished ***
2025-06-06 22:34:31 (13912): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-06 22:34:31 (13912): Guest Log: 2025-06-06 13:03:27,875 | INFO     | [payload] validate_post thread has finished
2025-06-06 22:34:31 (13912): Guest Log: 2025-06-06 13:03:27,875 | INFO     | [payload] failed_post thread has finished
2025-06-06 22:34:31 (13912): Guest Log: 2025-06-06 13:03:29,313 | INFO     | [data] queue_monitor thread has finished
2025-06-06 22:34:31 (13912): Guest Log: 2025-06-06 13:03:30,231 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139647409436480)>', '<ExcThread(monitor, started 139646155613952)>']
2025-06-06 22:34:31 (13912): Guest Log: 2025-06-06 13:03:30,762 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-06 22:34:31 (13912): Guest Log: 2025-06-06 13:03:30,762 | INFO     | [monitor] control thread has ended
2025-06-06 22:34:31 (13912): Guest Log: 2025-06-06 13:03:35,234 | INFO     | all workflow threads have been joined
2025-06-06 22:34:31 (13912): Guest Log: 2025-06-06 13:03:35,234 | INFO     | end of generic workflow (traces error code: 0)
2025-06-06 22:34:32 (13912): Guest Log: 2025-06-06 13:03:35,234 | INFO     | traces error code: 0
2025-06-06 22:34:32 (13912): Guest Log: 2025-06-06 13:03:35,234 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-06 22:34:32 (13912): Guest Log: 2025-06-06 13:03:35,698 [wrapper] ==== pilot stdout END ====
2025-06-06 22:34:32 (13912): Guest Log: 2025-06-06 13:03:35,702 [wrapper] ==== wrapper stdout RESUME ====
2025-06-06 22:34:32 (13912): Guest Log: 2025-06-06 13:03:35,706 [wrapper] pilotpid: 5905
2025-06-06 22:34:32 (13912): Guest Log: 2025-06-06 13:03:35,710 [wrapper] Pilot exit status: 0
2025-06-06 22:34:32 (13912): Guest Log: 2025-06-06 13:03:36,217 [wrapper] pandaids: 6677402675
2025-06-06 22:34:32 (13912): Guest Log: 2025-06-06 13:03:36,243 [wrapper] cleanup supervisor_pilot  8316 5906
2025-06-06 22:34:32 (13912): Guest Log: 2025-06-06 13:03:36,250 [wrapper] Test setup, not cleaning
2025-06-06 22:34:32 (13912): Guest Log: 2025-06-06 13:03:36,254 [wrapper] apfmon messages muted
2025-06-06 22:34:32 (13912): Guest Log: 2025-06-06 13:03:36,258 [wrapper] ==== wrapper stdout END ====
2025-06-06 22:34:32 (13912): Guest Log: 2025-06-06 13:03:36,262 [wrapper] ==== wrapper stderr END ====
2025-06-06 22:34:32 (13912): Guest Log:  *** Error codes and diagnostics ***
2025-06-06 22:34:32 (13912): Guest Log:     "exeErrorCode": 0,
2025-06-06 22:34:32 (13912): Guest Log:     "exeErrorDiag": "",
2025-06-06 22:34:32 (13912): Guest Log:     "pilotErrorCode": 0,
2025-06-06 22:34:32 (13912): Guest Log:     "pilotErrorDiag": "",
2025-06-06 22:34:32 (13912): Guest Log:  *** Listing of results directory ***
2025-06-06 22:34:32 (13912): Guest Log: total 182932
2025-06-06 22:34:32 (13912): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  2 21:29 pilot3.tar.gz
2025-06-06 22:34:32 (13912): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  2 22:09 queuedata.json
2025-06-06 22:34:32 (13912): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  2 22:09 runpilot2-wrapper.sh
2025-06-06 22:34:32 (13912): Guest Log: -rwxr-xr-x. 1 atlas atlas      6358 Jun  6 08:55 init_data.xml
2025-06-06 22:34:32 (13912): Guest Log: -rwxr-xr-x. 1 atlas atlas    508885 Jun  6 08:55 input.tar.gz
2025-06-06 22:34:32 (13912): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  6 08:55 start_atlas.sh
2025-06-06 22:34:32 (13912): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  6 08:55 EVNT.45006593._000516.pool.root.1 -> /data/./ATLAS.root_0
2025-06-06 22:34:32 (13912): Guest Log: -rw-r--r--. 1 atlas atlas      2524 Jun  6 08:56 pandaJob.out
2025-06-06 22:34:32 (13912): Guest Log: -rw-------. 1 atlas atlas    987967 Jun  6 08:58 agis_schedconf.cvmfs.json
2025-06-06 22:34:32 (13912): Guest Log: drwx------. 4 atlas atlas      4096 Jun  6 08:59 pilot3
2025-06-06 22:34:32 (13912): Guest Log: -rw-------. 1 atlas atlas 181182454 Jun  6 13:02 HITS.45006595._012900.pool.root.1
2025-06-06 22:34:32 (13912): Guest Log: -rw-------. 1 atlas atlas      1032 Jun  6 13:02 memory_monitor_summary.json
2025-06-06 22:34:32 (13912): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  6 13:03 agis_ddmendpoints.agis.ALL.json
2025-06-06 22:34:32 (13912): Guest Log: -rw-------. 1 atlas atlas    303936 Jun  6 13:03 log.45006595._012900.job.log.tgz.1
2025-06-06 22:34:32 (13912): Guest Log: -rw-------. 1 atlas atlas        97 Jun  6 13:03 pilot_heartbeat.json
2025-06-06 22:34:32 (13912): Guest Log: -rw-------. 1 atlas atlas      7742 Jun  6 13:03 heartbeat.json
2025-06-06 22:34:32 (13912): Guest Log: -rw-------. 1 atlas atlas      4729 Jun  6 13:03 pilotlog.txt
2025-06-06 22:34:32 (13912): Guest Log: -rw-------. 1 atlas atlas    886820 Jun  6 13:03 log.45006595._012900.job.log.1
2025-06-06 22:34:32 (13912): Guest Log: -rw-------. 1 atlas atlas       357 Jun  6 13:03 output.list
2025-06-06 22:34:32 (13912): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  6 13:03 runtime_log
2025-06-06 22:34:32 (13912): Guest Log: -rw-------. 1 atlas atlas   1208320 Jun  6 13:03 result.tar.gz
2025-06-06 22:34:32 (13912): Guest Log: -rw-------. 1 atlas atlas       668 Jun  6 13:03 Se6MDmXWSg7n9Rq4apOajLDm4fhM0noT9bVof3QYDm9iWKDmCD46So.diag
2025-06-06 22:34:32 (13912): Guest Log: -rw-r--r--. 1 atlas atlas      8626 Jun  6 13:03 runtime_log.err
2025-06-06 22:34:32 (13912): Guest Log: Looking for outputfile HITS.45006595._012900.pool.root.1
2025-06-06 22:34:32 (13912): Guest Log: HITS file was successfully produced
2025-06-06 22:34:32 (13912): Guest Log: -rw-------. 1 atlas atlas 181182454 Jun  6 13:02 /home/atlas/RunAtlas/HITS.45006595._012900.pool.root.1
2025-06-06 22:34:32 (13912): Guest Log: Successfully finished the ATLAS job!
2025-06-06 22:34:32 (13912): Guest Log: Copying the results back to the shared directory!
2025-06-06 22:34:32 (13912): Guest Log:  *** Contents of shared directory: ***
2025-06-06 22:34:32 (13912): Guest Log: total 391004
2025-06-06 22:34:32 (13912): Guest Log: -rwxrwxrwx. 1 root root 217459041 Jun  6 08:54 ATLAS.root_0
2025-06-06 22:34:32 (13912): Guest Log: -rwxrwxrwx. 1 root root 181182454 Jun  6  2025 HITS.pool.root.1
2025-06-06 22:34:32 (13912): Guest Log: -rwxrwxrwx. 1 root root      6358 Jun  6 08:54 init_data.xml
2025-06-06 22:34:32 (13912): Guest Log: -rwxrwxrwx. 1 root root    508885 Jun  3 02:59 input.tar.gz
2025-06-06 22:34:32 (13912): Guest Log: -rwxrwxrwx. 1 root root   1208320 Jun  6  2025 result.tar.gz
2025-06-06 22:34:32 (13912): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  3 02:59 start_atlas.sh
2025-06-06 22:34:32 (13912): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-06 22:34:33 (13912): VM Completion File Detected.
2025-06-06 22:34:33 (13912): Powering off VM.
2025-06-06 22:34:34 (13912): Successfully stopped VM.
2025-06-06 22:34:34 (13912): Deregistering VM. (boinc_e711672c68502080, slot#0)
2025-06-06 22:34:34 (13912): Removing network bandwidth throttle group from VM.
2025-06-06 22:34:35 (13912): Removing VM from VirtualBox.
22:34:40 (13912): called boinc_finish(0)

</stderr_txt>
]]>

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