Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:17:35 (32678): wrapper (7.7.26015): starting
11:17:35 (32678): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 11:17:35] Arguments: --nthreads 8
[2025-06-03 11:17:35] Threads: 8
[2025-06-03 11:17:35] Checking for CVMFS
[2025-06-03 11:17:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 11:17:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 11:17:36] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 11:17:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 11:17:37] 2.11.2.0 20118 31590 90724 146735 0 155 13177004 25165825 4637 130560 0 15747873 99.819 17744369 1945 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 11:17:37] CVMFS is ok
[2025-06-03 11:17:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 11:17:37] Checking for apptainer binary...
[2025-06-03 11:17:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 11:17:37] Running /usr/bin/apptainer --version
[2025-06-03 11:17:37] apptainer version 1.3.2-1.el7
[2025-06-03 11:17:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 11:29:24] cg-vwn344.simple-grid.lan
[2025-06-03 11:29:24] apptainer works
[2025-06-03 11:29:24] Set ATHENA_PROC_NUMBER=8
[2025-06-03 11:29:24] Set ATHENA_CORE_NUMBER=8
[2025-06-03 11:29:24] Starting ATLAS job with PandaID=6677398341
[2025-06-03 11:29:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 15:35:11]  *** The last 200 lines of the pilot log: ***
[2025-06-03 15:35:11] 2025-06-03 13:08:24,143 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 15:35:11] 2025-06-03 13:08:24,143 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 15:35:11] 2025-06-03 13:08:24,143 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 15:35:11] 2025-06-03 13:08:24,148 | INFO     | fitting pss+swap vs Time
[2025-06-03 15:35:11] 2025-06-03 13:08:24,148 | INFO     | sum of square deviations: 2954447953.0
[2025-06-03 15:35:11] 2025-06-03 13:08:24,150 | INFO     | sum of deviations: 32298034261.499985
[2025-06-03 15:35:11] 2025-06-03 13:08:24,150 | INFO     | mean x: 1748949557.5
[2025-06-03 15:35:11] 2025-06-03 13:08:24,150 | INFO     | mean y: 2443309.6650943398
[2025-06-03 15:35:11] 2025-06-03 13:08:24,150 | INFO     | -- intersect: -19117078722.331333
[2025-06-03 15:35:11] 2025-06-03 13:08:24,150 | INFO     | intersect: -19117078722.331333
[2025-06-03 15:35:11] 2025-06-03 13:08:24,151 | INFO     | chi2: 2.533951989661418
[2025-06-03 15:35:11] 2025-06-03 13:08:24,151 | INFO     | sum of square deviations: 2750295288.0
[2025-06-03 15:35:11] 2025-06-03 13:08:24,153 | INFO     | sum of deviations: 45045183491.000015
[2025-06-03 15:35:11] 2025-06-03 13:08:24,153 | INFO     | mean x: 1748949405.0
[2025-06-03 15:35:11] 2025-06-03 13:08:24,153 | INFO     | mean y: 2452632.265700483
[2025-06-03 15:35:11] 2025-06-03 13:08:24,153 | INFO     | -- intersect: -28642379509.373158
[2025-06-03 15:35:11] 2025-06-03 13:08:24,153 | INFO     | intersect: -28642379509.373158
[2025-06-03 15:35:11] 2025-06-03 13:08:24,154 | INFO     | chi2: 1.7652300981738829
[2025-06-03 15:35:11] 2025-06-03 13:08:24,154 | INFO     | current chi2=1.7652300981738829 (change=30.336876729469942 %)
[2025-06-03 15:35:11] 2025-06-03 13:08:24,154 | INFO     | sum of square deviations: 2555770710.5
[2025-06-03 15:35:11] 2025-06-03 13:08:24,156 | INFO     | sum of deviations: 43590758844.0
[2025-06-03 15:35:11] 2025-06-03 13:08:24,156 | INFO     | mean x: 1748949252.5
[2025-06-03 15:35:11] 2025-06-03 13:08:24,156 | INFO     | mean y: 2451491.8415841586
[2025-06-03 15:35:11] 2025-06-03 13:08:24,156 | INFO     | -- intersect: -29827307798.73526
[2025-06-03 15:35:11] 2025-06-03 13:08:24,156 | INFO     | intersect: -29827307798.73526
[2025-06-03 15:35:11] 2025-06-03 13:08:24,156 | INFO     | chi2: 1.7661761097685822
[2025-06-03 15:35:11] 2025-06-03 13:08:24,157 | INFO     | current chi2=1.7661761097685822 (change=-0.05359140407122879 %)
[2025-06-03 15:35:11] 2025-06-03 13:08:24,157 | INFO     | right removable region: 201
[2025-06-03 15:35:11] 2025-06-03 13:08:24,157 | INFO     | sum of square deviations: 2750295288.0
[2025-06-03 15:35:11] 2025-06-03 13:08:24,159 | INFO     | sum of deviations: -6210805158.0
[2025-06-03 15:35:11] 2025-06-03 13:08:24,159 | INFO     | mean x: 1748949710.0
[2025-06-03 15:35:11] 2025-06-03 13:08:24,159 | INFO     | mean y: 2471830.4396135267
[2025-06-03 15:35:11] 2025-06-03 13:08:24,159 | INFO     | -- intersect: 3952006241.288156
[2025-06-03 15:35:11] 2025-06-03 13:08:24,159 | INFO     | intersect: 3952006241.288156
[2025-06-03 15:35:11] 2025-06-03 13:08:24,160 | INFO     | chi2: 0.8114777336736894
[2025-06-03 15:35:11] 2025-06-03 13:08:24,160 | INFO     | current chi2=0.8114777336736894 (change=67.97580471198597 %)
[2025-06-03 15:35:11] 2025-06-03 13:08:24,160 | INFO     | sum of square deviations: 2555770710.5
[2025-06-03 15:35:11] 2025-06-03 13:08:24,162 | INFO     | sum of deviations: -4563968607.5
[2025-06-03 15:35:11] 2025-06-03 13:08:24,162 | INFO     | mean x: 1748949862.5
[2025-06-03 15:35:11] 2025-06-03 13:08:24,162 | INFO     | mean y: 2470499.4801980196
[2025-06-03 15:35:11] 2025-06-03 13:08:24,162 | INFO     | -- intersect: 3125658442.6505175
[2025-06-03 15:35:11] 2025-06-03 13:08:24,162 | INFO     | intersect: 3125658442.6505175
[2025-06-03 15:35:11] 2025-06-03 13:08:24,162 | INFO     | chi2: 0.7944267820844962
[2025-06-03 15:35:11] 2025-06-03 13:08:24,162 | INFO     | current chi2=0.7944267820844962 (change=2.101222360347552 %)
[2025-06-03 15:35:11] 2025-06-03 13:08:24,162 | INFO     | left removable region: 20
[2025-06-03 15:35:11] 2025-06-03 13:08:24,163 | INFO     | sum of square deviations: 1838657730.0
[2025-06-03 15:35:11] 2025-06-03 13:08:24,164 | INFO     | sum of deviations: 4929743365.0
[2025-06-03 15:35:11] 2025-06-03 13:08:24,164 | INFO     | mean x: 1748949832.0
[2025-06-03 15:35:11] 2025-06-03 13:08:24,164 | INFO     | mean y: 2483116.7127071824
[2025-06-03 15:35:11] 2025-06-03 13:08:24,164 | INFO     | -- intersect: -4686738639.649672
[2025-06-03 15:35:11] 2025-06-03 13:08:24,164 | INFO     | intersect: -4686738639.649672
[2025-06-03 15:35:11] 2025-06-03 13:08:24,165 | INFO     | chi2: 0.00024755236538189537
[2025-06-03 15:35:11] 2025-06-03 13:08:24,165 | INFO     | -- intersect: -4686738639.649672
[2025-06-03 15:35:11] 2025-06-03 13:08:24,165 | INFO     | current memory leak: 2.68 B/s (using 181 data points, chi2=0.00)
[2025-06-03 15:35:11] 2025-06-03 13:08:24,166 | INFO     | ..............................
[2025-06-03 15:35:11] 2025-06-03 13:08:24,166 | INFO     | . Timing measurements:
[2025-06-03 15:35:11] 2025-06-03 13:08:24,166 | INFO     | . get job = 0 s
[2025-06-03 15:35:11] 2025-06-03 13:08:24,166 | INFO     | . initial setup = 2 s
[2025-06-03 15:35:11] 2025-06-03 13:08:24,166 | INFO     | . payload setup = 31 s
[2025-06-03 15:35:11] 2025-06-03 13:08:24,166 | INFO     | . stage-in = 0 s
[2025-06-03 15:35:11] 2025-06-03 13:08:24,166 | INFO     | . payload execution = 12947 s
[2025-06-03 15:35:11] 2025-06-03 13:08:24,166 | INFO     | . stage-out = 3 s
[2025-06-03 15:35:11] 2025-06-03 13:08:24,167 | INFO     | . log creation = 1 s
[2025-06-03 15:35:11] 2025-06-03 13:08:24,167 | INFO     | ..............................
[2025-06-03 15:35:11] 2025-06-03 13:08:24,363 | INFO     | 
[2025-06-03 15:35:11] 2025-06-03 13:08:24,363 | INFO     | job summary report
[2025-06-03 15:35:11] 2025-06-03 13:08:24,363 | INFO     | --------------------------------------------------
[2025-06-03 15:35:11] 2025-06-03 13:08:24,363 | INFO     | PanDA job id: 6677398341
[2025-06-03 15:35:11] 2025-06-03 13:08:24,363 | INFO     | task id: 45006595
[2025-06-03 15:35:11] 2025-06-03 13:08:24,363 | INFO     | errors: (none)
[2025-06-03 15:35:11] 2025-06-03 13:08:24,363 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 15:35:11] 2025-06-03 13:08:24,363 | INFO     | pilot state: finished 
[2025-06-03 15:35:11] 2025-06-03 13:08:24,364 | INFO     | transexitcode: 0
[2025-06-03 15:35:11] 2025-06-03 13:08:24,364 | INFO     | exeerrorcode: 0
[2025-06-03 15:35:11] 2025-06-03 13:08:24,364 | INFO     | exeerrordiag: 
[2025-06-03 15:35:11] 2025-06-03 13:08:24,364 | INFO     | exitcode: 0
[2025-06-03 15:35:11] 2025-06-03 13:08:24,364 | INFO     | exitmsg: OK
[2025-06-03 15:35:11] 2025-06-03 13:08:24,364 | INFO     | cpuconsumptiontime: 48543 s
[2025-06-03 15:35:11] 2025-06-03 13:08:24,364 | INFO     | nevents: 400
[2025-06-03 15:35:11] 2025-06-03 13:08:24,364 | INFO     | neventsw: 0
[2025-06-03 15:35:11] 2025-06-03 13:08:24,364 | INFO     | pid: 20489
[2025-06-03 15:35:11] 2025-06-03 13:08:24,364 | INFO     | pgrp: 20489
[2025-06-03 15:35:11] 2025-06-03 13:08:24,364 | INFO     | corecount: 8
[2025-06-03 15:35:11] 2025-06-03 13:08:24,364 | INFO     | event service: False
[2025-06-03 15:35:11] 2025-06-03 13:08:24,364 | INFO     | sizes: {0: 2405011, 1: 2405210, 12: 2405210, 19: 2405444, 23: 2405472, 12982: 2434703, 12983: 2434830, 12988: 2443883, 13076: 2443997}
[2025-06-03 15:35:11] 2025-06-03 13:08:24,365 | INFO     | --------------------------------------------------
[2025-06-03 15:35:11] 2025-06-03 13:08:24,365 | INFO     | 
[2025-06-03 15:35:11] 2025-06-03 13:08:24,365 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-03 15:35:11] 2025-06-03 13:08:24,775 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 15:35:11] 2025-06-03 13:08:24,776 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 15:35:11] 2025-06-03 13:08:24,776 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 15:35:11] 2025-06-03 13:08:24,776 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 15:35:11] 2025-06-03 13:08:24,776 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 15:35:11] 2025-06-03 13:08:24,776 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 15:35:11] 2025-06-03 13:08:24,776 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 15:35:11] 2025-06-03 13:08:24,776 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 15:35:11] 2025-06-03 13:08:24,776 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 15:35:11] 2025-06-03 13:08:24,777 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 15:35:11] 2025-06-03 13:08:24,777 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 15:35:11] 2025-06-03 13:08:24,777 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 15:35:11] 2025-06-03 13:08:24,777 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 15:35:11] 2025-06-03 13:08:24,777 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 15:35:11] 2025-06-03 13:08:24,777 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 15:35:11] 2025-06-03 13:08:24,777 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 15:35:11] 2025-06-03 13:08:24,777 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 15:35:11] 2025-06-03 13:08:24,777 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 15:35:11] 2025-06-03 13:08:24,777 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 15:35:11] 2025-06-03 13:08:24,778 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 15:35:11] 2025-06-03 13:08:24,778 | INFO     | job 6677398341 has completed (purged errors)
[2025-06-03 15:35:11] 2025-06-03 13:08:24,778 | INFO     | overall cleanup function is called
[2025-06-03 15:35:11] 2025-06-03 13:08:25,787 | INFO     | --- collectZombieJob: --- 10, [20489]
[2025-06-03 15:35:11] 2025-06-03 13:08:25,787 | INFO     | zombie collector waiting for pid 20489
[2025-06-03 15:35:11] 2025-06-03 13:08:25,787 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 15:35:11] 2025-06-03 13:08:25,787 | INFO     | collected zombie processes
[2025-06-03 15:35:11] 2025-06-03 13:08:25,787 | INFO     | will attempt to kill all subprocesses of pid=20489
[2025-06-03 15:35:11] 2025-06-03 13:08:25,898 | INFO     | process IDs to be killed: [20489] (in reverse order)
[2025-06-03 15:35:11] 2025-06-03 13:08:26,727 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 15:35:11] 2025-06-03 13:08:26,728 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 15:35:11] 2025-06-03 13:08:26,731 | INFO     | did not find any defunct processes belonging to 20489
[2025-06-03 15:35:11] 2025-06-03 13:08:26,734 | INFO     | did not find any defunct processes belonging to 20489
[2025-06-03 15:35:11] 2025-06-03 13:08:26,734 | INFO     | ready for new job
[2025-06-03 15:35:11] 2025-06-03 13:08:26,734 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 15:35:11] 2025-06-03 13:08:26,736 | INFO     | **************************************
[2025-06-03 15:35:11] 2025-06-03 13:08:26,736 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 15:35:11] 2025-06-03 13:08:26,736 | INFO     | **************************************
[2025-06-03 15:35:11] 2025-06-03 13:08:26,736 | INFO     | 
[2025-06-03 15:35:11] 2025-06-03 13:08:26,737 | INFO     | pilot is running in a VM
[2025-06-03 15:35:11] 2025-06-03 13:08:26,737 | INFO     | architecture information:
[2025-06-03 15:35:11] 2025-06-03 13:08:26,754 | INFO     | executing command: cat /etc/os-release
[2025-06-03 15:35:11] 2025-06-03 13:08:27,076 | INFO     | cat /etc/os-release:
[2025-06-03 15:35:11] NAME="CentOS Linux"
[2025-06-03 15:35:11] VERSION="7 (Core)"
[2025-06-03 15:35:11] ID="centos"
[2025-06-03 15:35:11] ID_LIKE="rhel fedora"
[2025-06-03 15:35:11] VERSION_ID="7"
[2025-06-03 15:35:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 15:35:11] ANSI_COLOR="0;31"
[2025-06-03 15:35:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 15:35:11] HOME_URL="https://www.centos.org/"
[2025-06-03 15:35:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 15:35:11] 
[2025-06-03 15:35:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 15:35:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 15:35:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 15:35:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 15:35:11] 
[2025-06-03 15:35:11] 2025-06-03 13:08:27,077 | INFO     | **************************************
[2025-06-03 15:35:11] 2025-06-03 13:08:27,580 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-03 15:35:11] 2025-06-03 13:08:27,866 | INFO     | sufficient remaining disk space (496821600256 B)
[2025-06-03 15:35:11] 2025-06-03 13:08:27,866 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 15:35:11] 2025-06-03 13:08:27,866 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 15:35:11] 2025-06-03 13:08:27,866 | INFO     | update_server=False
[2025-06-03 15:35:11] 2025-06-03 13:08:27,867 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 15:35:11] 2025-06-03 13:08:27,868 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 15:35:11] 2025-06-03 13:08:27,868 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 15:35:11] 2025-06-03 13:08:27,868 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 15:35:11] 2025-06-03 13:08:27,869 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 15:35:11] 2025-06-03 13:08:27,869 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 15:35:11] 2025-06-03 13:08:27,898 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-03 15:35:11] 2025-06-03 13:08:27,898 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-03 15:35:11] 2025-06-03 13:08:27,898 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 15:35:11] 2025-06-03 13:08:27,898 | INFO     | will abort loop
[2025-06-03 15:35:11] 2025-06-03 13:08:28,387 | INFO     | all payload control threads have been joined
[2025-06-03 15:35:11] 2025-06-03 13:08:28,634 | INFO     | all data control threads have been joined
[2025-06-03 15:35:11] 2025-06-03 13:08:28,873 | INFO     | [job] retrieve thread has finished
[2025-06-03 15:35:11] 2025-06-03 13:08:28,878 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 15:35:11] 2025-06-03 13:08:28,892 | INFO     | all job control threads have been joined
[2025-06-03 15:35:11] 2025-06-03 13:08:28,904 | INFO     | [job] job monitor thread has finished
[2025-06-03 15:35:11] 2025-06-03 13:08:28,933 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 15:35:11] 2025-06-03 13:08:29,077 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 15:35:11] 2025-06-03 13:08:29,359 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 15:35:11] 2025-06-03 13:08:29,393 | INFO     | [payload] control thread has finished
[2025-06-03 15:35:11] 2025-06-03 13:08:29,445 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 15:35:11] 2025-06-03 13:08:29,639 | INFO     | [data] control thread has finished
[2025-06-03 15:35:11] 2025-06-03 13:08:29,685 | INFO     | [payload] validate_post thread has finished
[2025-06-03 15:35:11] 2025-06-03 13:08:29,825 | INFO     | [payload] failed_post thread has finished
[2025-06-03 15:35:11] 2025-06-03 13:08:29,898 | INFO     | [job] control thread has finished
[2025-06-03 15:35:11] 2025-06-03 13:08:30,086 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 15:35:11] 2025-06-03 13:08:30,338 | INFO     | [job] validate thread has finished
[2025-06-03 15:35:11] 2025-06-03 13:08:30,363 | INFO     | [data] copytool_in thread has finished
[2025-06-03 15:35:11] 2025-06-03 13:08:30,365 | INFO     | [job] queue monitor thread has finished
[2025-06-03 15:35:11] 2025-06-03 13:08:30,885 | INFO     | [data] copytool_out thread has finished
[2025-06-03 15:35:11] 2025-06-03 13:08:31,879 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 15:35:11] 2025-06-03 13:08:33,117 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140301503362880)>', '<ExcThread(monitor, started 140301054232320)>']
[2025-06-03 15:35:11] 2025-06-03 13:08:33,905 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 15:35:11] 2025-06-03 13:08:33,905 | INFO     | [monitor] control thread has ended
[2025-06-03 15:35:11] 2025-06-03 13:08:38,143 | INFO     | all workflow threads have been joined
[2025-06-03 15:35:11] 2025-06-03 13:08:38,143 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 15:35:11] 2025-06-03 13:08:38,143 | INFO     | traces error code: 0
[2025-06-03 15:35:11] 2025-06-03 13:08:38,144 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 15:35:11] 2025-06-03 13:08:38,549 [wrapper] ==== pilot stdout END ====
[2025-06-03 15:35:11] 2025-06-03 13:08:38,671 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 15:35:11] 2025-06-03 13:08:38,765 [wrapper] pilotpid: 6418
[2025-06-03 15:35:11] 2025-06-03 13:08:38,866 [wrapper] Pilot exit status: 0
[2025-06-03 15:35:11] 2025-06-03 13:08:39,314 [wrapper] pandaids: 6677398341
[2025-06-03 15:35:11] 2025-06-03 13:08:40,189 [wrapper] cleanup supervisor_pilot 20966 6419
[2025-06-03 15:35:11] 2025-06-03 13:08:40,297 [wrapper] Test setup, not cleaning
[2025-06-03 15:35:11] 2025-06-03 13:08:40,406 [wrapper] apfmon messages muted
[2025-06-03 15:35:11] 2025-06-03 13:08:40,550 [wrapper] ==== wrapper stdout END ====
[2025-06-03 15:35:11] 2025-06-03 13:08:40,617 [wrapper] ==== wrapper stderr END ====
[2025-06-03 15:35:11]  *** Error codes and diagnostics ***
[2025-06-03 15:35:11]     "exeErrorCode": 0,
[2025-06-03 15:35:11]     "exeErrorDiag": "",
[2025-06-03 15:35:11]     "pilotErrorCode": 0,
[2025-06-03 15:35:11]     "pilotErrorDiag": "",
[2025-06-03 15:35:11]  *** Listing of results directory ***
[2025-06-03 15:35:11] total 386320
[2025-06-03 15:35:11] -rw-r--r--. 1 boinc boinc    495897 Jun  2 22:11 pilot3.tar.gz
[2025-06-03 15:35:11] -rw-r--r--. 1 boinc boinc      5111 Jun  2 22:13 queuedata.json
[2025-06-03 15:35:11] -rwx------. 1 boinc boinc     37140 Jun  2 22:13 runpilot2-wrapper.sh
[2025-06-03 15:35:11] -rw-r--r--. 1 boinc boinc       100 Jun  3 11:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 15:35:11] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 11:17 run_atlas
[2025-06-03 15:35:11] -rw-r--r--. 1 boinc boinc       105 Jun  3 11:17 job.xml
[2025-06-03 15:35:11] -rw-r--r--. 2 boinc boinc     15093 Jun  3 11:17 start_atlas.sh
[2025-06-03 15:35:11] drwxrwx--x. 2 boinc boinc        68 Jun  3 11:17 shared
[2025-06-03 15:35:11] -rw-r--r--. 2 boinc boinc    508879 Jun  3 11:17 input.tar.gz
[2025-06-03 15:35:11] -rw-r--r--. 1 boinc boinc      6391 Jun  3 11:17 init_data.xml
[2025-06-03 15:35:11] -rw-r--r--. 2 boinc boinc 213653896 Jun  3 11:17 EVNT.45006593._000430.pool.root.1
[2025-06-03 15:35:11] -rw-r--r--. 1 boinc boinc         0 Jun  3 11:17 boinc_lockfile
[2025-06-03 15:35:11] -rw-r--r--. 1 boinc boinc      2524 Jun  3 11:29 pandaJob.out
[2025-06-03 15:35:11] -rw-------. 1 boinc boinc    985498 Jun  3 11:29 agis_schedconf.cvmfs.json
[2025-06-03 15:35:11] drwx------. 4 boinc boinc      4096 Jun  3 11:29 pilot3
[2025-06-03 15:35:11] -rw-------. 1 boinc boinc 175065728 Jun  3 15:05 HITS.45006595._010748.pool.root.1
[2025-06-03 15:35:11] -rw-r--r--. 1 boinc boinc       531 Jun  3 15:05 boinc_task_state.xml
[2025-06-03 15:35:11] -rw-------. 1 boinc boinc      1016 Jun  3 15:06 memory_monitor_summary.json
[2025-06-03 15:35:11] -rw-------. 1 boinc boinc   1603667 Jun  3 15:06 agis_ddmendpoints.agis.ALL.json
[2025-06-03 15:35:11] -rw-------. 1 boinc boinc    388032 Jun  3 15:06 log.45006595._010748.job.log.tgz.1
[2025-06-03 15:35:11] -rw-------. 1 boinc boinc        95 Jun  3 15:07 pilot_heartbeat.json
[2025-06-03 15:35:11] -rw-------. 1 boinc boinc      7698 Jun  3 15:08 heartbeat.json
[2025-06-03 15:35:11] -rw-------. 1 boinc boinc      4725 Jun  3 15:08 pilotlog.txt
[2025-06-03 15:35:11] -rw-------. 1 boinc boinc   1134669 Jun  3 15:08 log.45006595._010748.job.log.1
[2025-06-03 15:35:11] -rw-------. 1 boinc boinc       357 Jun  3 15:08 output.list
[2025-06-03 15:35:11] -rw-r--r--. 1 boinc boinc       620 Jun  3 15:08 runtime_log
[2025-06-03 15:35:11] -rw-------. 1 boinc boinc   1546240 Jun  3 15:08 result.tar.gz
[2025-06-03 15:35:11] -rw-r--r--. 1 boinc boinc      8659 Jun  3 15:08 runtime_log.err
[2025-06-03 15:35:11] -rw-------. 1 boinc boinc       656 Jun  3 15:08 04VKDmAiQg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNWgKDmQmf5Ho.diag
[2025-06-03 15:35:11] -rw-r--r--. 1 boinc boinc      8192 Jun  3 15:35 boinc_mmap_file
[2025-06-03 15:35:11] -rw-r--r--. 1 boinc boinc        28 Jun  3 15:35 wrapper_checkpoint.txt
[2025-06-03 15:35:11] -rw-r--r--. 1 boinc boinc     20506 Jun  3 15:35 stderr.txt
[2025-06-03 15:35:11] HITS file was successfully produced:
[2025-06-03 15:35:11] -rw-------. 1 boinc boinc 175065728 Jun  3 15:05 shared/HITS.pool.root.1
[2025-06-03 15:35:11]  *** Contents of shared directory: ***
[2025-06-03 15:35:11] total 381640
[2025-06-03 15:35:11] -rw-r--r--. 2 boinc boinc     15093 Jun  3 11:17 start_atlas.sh
[2025-06-03 15:35:11] -rw-r--r--. 2 boinc boinc    508879 Jun  3 11:17 input.tar.gz
[2025-06-03 15:35:11] -rw-r--r--. 2 boinc boinc 213653896 Jun  3 11:17 ATLAS.root_0
[2025-06-03 15:35:11] -rw-------. 1 boinc boinc 175065728 Jun  3 15:05 HITS.pool.root.1
[2025-06-03 15:35:11] -rw-------. 1 boinc boinc   1546240 Jun  3 15:08 result.tar.gz
15:35:13 (32678): run_atlas exited; CPU time 48707.828778
15:35:13 (32678): called boinc_finish(0)

</stderr_txt>
]]>

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