Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:56:42 (25839): wrapper (7.7.26015): starting
21:56:42 (25839): wrapper: running run_atlas (--nthreads 12)
[2025-06-02 21:56:42] Arguments: --nthreads 12
[2025-06-02 21:56:42] Threads: 12
[2025-06-02 21:56:42] Checking for CVMFS
[2025-06-02 21:56:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-02 21:56:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-02 21:56:42] Running cvmfs_config stat atlas.cern.ch
[2025-06-02 21:56:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-02 21:56:43] 2.11.2.0 2979 33610 90968 146725 0 56 17217411 20275201 1 130560 0 13423342 99.981 5708558 6986 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-02 21:56:43] CVMFS is ok
[2025-06-02 21:56:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-02 21:56:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-02 21:56:43] Further information can be found at the LHC@home message board.
[2025-06-02 21:56:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 21:56:43] Checking for apptainer binary...
[2025-06-02 21:56:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-02 21:56:43] Running /usr/bin/apptainer --version
[2025-06-02 21:56:43] apptainer version 1.3.2-1.el7
[2025-06-02 21:56:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 21:56:44] c-205-7.aglt2.org
[2025-06-02 21:56:44] apptainer works
[2025-06-02 21:56:44] Set ATHENA_PROC_NUMBER=12
[2025-06-02 21:56:44] Set ATHENA_CORE_NUMBER=12
[2025-06-02 21:56:44] Starting ATLAS job with PandaID=6677397984
[2025-06-02 21:56:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-02 23:04:09]  *** The last 200 lines of the pilot log: ***
[2025-06-02 23:04:09]  lfn=log.45006595._010543.job.log.tgz.1
[2025-06-02 23:04:09]  mtime=0
[2025-06-02 23:04:09]  protocol_id=None
[2025-06-02 23:04:09]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-02 23:04:09]  replicas=None
[2025-06-02 23:04:09]  scope=mc23_13p6TeV
[2025-06-02 23:04:09]  status=None
[2025-06-02 23:04:09]  status_code=0
[2025-06-02 23:04:09]  storage_token=
[2025-06-02 23:04:09]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6677397984/log.45006595._010543.job.log.tgz.1
[2025-06-02 23:04:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e7/87/log.45006595._010543.job.log.tgz.1
[2025-06-02 23:04:09]  workdir=None
[2025-06-02 23:04:09] ]
[2025-06-02 23:04:09] 2025-06-03 03:03:44,812 | INFO     | transferring file log.45006595._010543.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6677397984/log.45006595._010543.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-02 23:04:09] 2025-06-03 03:03:44,813 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6677397984/log.45006595._010543.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._010543.job
[2025-06-02 23:04:09] 2025-06-03 03:03:44,835 | INFO     | adding to output.list: log.45006595._010543.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e7/87/log.45006595._010543.job.log.tg
[2025-06-02 23:04:09] 2025-06-03 03:03:44,836 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-02 23:04:09] 2025-06-03 03:03:44,836 | INFO     | summary of transferred files:
[2025-06-02 23:04:09] 2025-06-03 03:03:44,837 | INFO     |  -- lfn=log.45006595._010543.job.log.tgz.1, status_code=0, status=transferred
[2025-06-02 23:04:09] 2025-06-03 03:03:44,837 | INFO     | stage-out finished correctly
[2025-06-02 23:04:09] 2025-06-03 03:03:46,145 | INFO     | monitor loop #300: job 0:6677397984 is in state 'finished'
[2025-06-02 23:04:09] 2025-06-03 03:03:46,145 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-02 23:04:09] 2025-06-03 03:03:48,293 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-02 23:04:09] 2025-06-03 03:03:48,497 | INFO     | PID=29457 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-02 23:04:09] 2025-06-03 03:03:48,646 | INFO     | monitor loop #301: job 0:6677397984 is in state 'finished'
[2025-06-02 23:04:09] 2025-06-03 03:03:48,646 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-02 23:04:09] 2025-06-03 03:03:50,176 | INFO     | job 6677397984 has state=finished
[2025-06-02 23:04:09] 2025-06-03 03:03:50,176 | INFO     | preparing for final server update for job 6677397984 in state='finished'
[2025-06-02 23:04:09] 2025-06-03 03:03:50,177 | INFO     | this job has now completed (state=finished)
[2025-06-02 23:04:09] 2025-06-03 03:03:50,177 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-02 23:04:09] 2025-06-03 03:03:50,177 | INFO     | log transfer has been attempted: DONE
[2025-06-02 23:04:09] 2025-06-03 03:03:50,177 | INFO     | job 6677397984 has finished - writing final server update
[2025-06-02 23:04:09] 2025-06-03 03:03:50,178 | INFO     | total number of processed events: 400 (read)
[2025-06-02 23:04:09] 2025-06-03 03:03:50,181 | INFO     | executing command: lscpu
[2025-06-02 23:04:09] 2025-06-03 03:03:50,212 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-02 23:04:09] 2025-06-03 03:03:51,148 | INFO     | monitor loop #302: job 0:6677397984 is in state 'finished'
[2025-06-02 23:04:09] 2025-06-03 03:03:51,149 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-02 23:04:09] 2025-06-03 03:03:51,503 | INFO     | 4017s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-02 23:04:09] 2025-06-03 03:03:53,652 | INFO     | monitor loop #303: job 0:6677397984 is in state 'finished'
[2025-06-02 23:04:09] 2025-06-03 03:03:53,652 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-02 23:04:09] 2025-06-03 03:03:54,823 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-02 23:04:09] 2025-06-03 03:03:54,823 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677397984/memory_monitor_summary.json (trf name=prmon)
[2025-06-02 23:04:09] 2025-06-03 03:03:54,824 | INFO     | extracted standard info from prmon json
[2025-06-02 23:04:09] 2025-06-03 03:03:54,824 | INFO     | extracted standard memory fields from prmon json
[2025-06-02 23:04:09] 2025-06-03 03:03:54,825 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-02 23:04:09] 2025-06-03 03:03:54,825 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-02 23:04:09] 2025-06-03 03:03:54,825 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-02 23:04:09] 2025-06-03 03:03:54,827 | INFO     | fitting pss+swap vs Time
[2025-06-02 23:04:09] 2025-06-03 03:03:54,827 | INFO     | sum of square deviations: 63666310.0
[2025-06-02 23:04:09] 2025-06-03 03:03:54,828 | INFO     | sum of deviations: -241788140.00000003
[2025-06-02 23:04:09] 2025-06-03 03:03:54,828 | INFO     | mean x: 1748917921.0
[2025-06-02 23:04:09] 2025-06-03 03:03:54,828 | INFO     | mean y: 2676536.966101695
[2025-06-02 23:04:09] 2025-06-03 03:03:54,828 | INFO     | -- intersect: 6644613396.998621
[2025-06-02 23:04:09] 2025-06-03 03:03:54,828 | INFO     | intersect: 6644613396.998621
[2025-06-02 23:04:09] 2025-06-03 03:03:54,829 | INFO     | chi2: 0.05591446909875947
[2025-06-02 23:04:09] 2025-06-03 03:03:54,829 | INFO     | -- intersect: 6644613396.998621
[2025-06-02 23:04:09] 2025-06-03 03:03:54,829 | INFO     | current memory leak: -3.80 B/s (using 59 data points, chi2=0.06)
[2025-06-02 23:04:09] 2025-06-03 03:03:54,829 | INFO     | ..............................
[2025-06-02 23:04:09] 2025-06-03 03:03:54,829 | INFO     | . Timing measurements:
[2025-06-02 23:04:09] 2025-06-03 03:03:54,829 | INFO     | . get job = 0 s
[2025-06-02 23:04:09] 2025-06-03 03:03:54,830 | INFO     | . initial setup = 2 s
[2025-06-02 23:04:09] 2025-06-03 03:03:54,830 | INFO     | . payload setup = 9 s
[2025-06-02 23:04:09] 2025-06-03 03:03:54,830 | INFO     | . stage-in = 0 s
[2025-06-02 23:04:09] 2025-06-03 03:03:54,830 | INFO     | . payload execution = 3978 s
[2025-06-02 23:04:09] 2025-06-03 03:03:54,830 | INFO     | . stage-out = 0 s
[2025-06-02 23:04:09] 2025-06-03 03:03:54,830 | INFO     | . log creation = 0 s
[2025-06-02 23:04:09] 2025-06-03 03:03:54,830 | INFO     | ..............................
[2025-06-02 23:04:09] 2025-06-03 03:03:54,914 | INFO     | 
[2025-06-02 23:04:09] 2025-06-03 03:03:54,915 | INFO     | job summary report
[2025-06-02 23:04:09] 2025-06-03 03:03:54,915 | INFO     | --------------------------------------------------
[2025-06-02 23:04:09] 2025-06-03 03:03:54,915 | INFO     | PanDA job id: 6677397984
[2025-06-02 23:04:09] 2025-06-03 03:03:54,915 | INFO     | task id: 45006595
[2025-06-02 23:04:09] 2025-06-03 03:03:54,915 | INFO     | errors: (none)
[2025-06-02 23:04:09] 2025-06-03 03:03:54,915 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-02 23:04:09] 2025-06-03 03:03:54,916 | INFO     | pilot state: finished 
[2025-06-02 23:04:09] 2025-06-03 03:03:54,916 | INFO     | transexitcode: 0
[2025-06-02 23:04:09] 2025-06-03 03:03:54,916 | INFO     | exeerrorcode: 0
[2025-06-02 23:04:09] 2025-06-03 03:03:54,916 | INFO     | exeerrordiag: 
[2025-06-02 23:04:09] 2025-06-03 03:03:54,916 | INFO     | exitcode: 0
[2025-06-02 23:04:09] 2025-06-03 03:03:54,916 | INFO     | exitmsg: OK
[2025-06-02 23:04:09] 2025-06-03 03:03:54,916 | INFO     | cpuconsumptiontime: 42032 s
[2025-06-02 23:04:09] 2025-06-03 03:03:54,917 | INFO     | nevents: 400
[2025-06-02 23:04:09] 2025-06-03 03:03:54,917 | INFO     | neventsw: 0
[2025-06-02 23:04:09] 2025-06-03 03:03:54,917 | INFO     | pid: 3644
[2025-06-02 23:04:09] 2025-06-03 03:03:54,917 | INFO     | pgrp: 3644
[2025-06-02 23:04:09] 2025-06-03 03:03:54,917 | INFO     | corecount: 12
[2025-06-02 23:04:09] 2025-06-03 03:03:54,917 | INFO     | event service: False
[2025-06-02 23:04:09] 2025-06-03 03:03:54,918 | INFO     | sizes: {0: 2405011, 1: 2405210, 6: 2405416, 11: 2405444, 3991: 2431121, 3992: 2440062, 3995: 2440246, 4002: 2440416}
[2025-06-02 23:04:09] 2025-06-03 03:03:54,918 | INFO     | --------------------------------------------------
[2025-06-02 23:04:09] 2025-06-03 03:03:54,918 | INFO     | 
[2025-06-02 23:04:09] 2025-06-03 03:03:54,918 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-02 23:04:09] 2025-06-03 03:03:54,943 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-02 23:04:09] 2025-06-03 03:03:54,943 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-02 23:04:09] 2025-06-03 03:03:54,943 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-02 23:04:09] 2025-06-03 03:03:54,943 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-02 23:04:09] 2025-06-03 03:03:54,944 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-02 23:04:09] 2025-06-03 03:03:54,944 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-02 23:04:09] 2025-06-03 03:03:54,944 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-02 23:04:09] 2025-06-03 03:03:54,944 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-02 23:04:09] 2025-06-03 03:03:54,944 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-02 23:04:09] 2025-06-03 03:03:54,944 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-02 23:04:09] 2025-06-03 03:03:54,945 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-02 23:04:09] 2025-06-03 03:03:54,945 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-02 23:04:09] 2025-06-03 03:03:54,945 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-02 23:04:09] 2025-06-03 03:03:54,945 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-02 23:04:09] 2025-06-03 03:03:54,945 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-02 23:04:09] 2025-06-03 03:03:54,945 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-02 23:04:09] 2025-06-03 03:03:54,946 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-02 23:04:09] 2025-06-03 03:03:54,946 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-02 23:04:09] 2025-06-03 03:03:54,946 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-02 23:04:09] 2025-06-03 03:03:54,946 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-02 23:04:09] 2025-06-03 03:03:54,946 | INFO     | job 6677397984 has completed (purged errors)
[2025-06-02 23:04:09] 2025-06-03 03:03:54,947 | INFO     | overall cleanup function is called
[2025-06-02 23:04:09] 2025-06-03 03:03:55,955 | INFO     | --- collectZombieJob: --- 10, [3644]
[2025-06-02 23:04:09] 2025-06-03 03:03:55,955 | INFO     | zombie collector waiting for pid 3644
[2025-06-02 23:04:09] 2025-06-03 03:03:55,955 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-02 23:04:09] 2025-06-03 03:03:55,955 | INFO     | collected zombie processes
[2025-06-02 23:04:09] 2025-06-03 03:03:55,955 | INFO     | will attempt to kill all subprocesses of pid=3644
[2025-06-02 23:04:09] 2025-06-03 03:03:56,048 | INFO     | process IDs to be killed: [3644] (in reverse order)
[2025-06-02 23:04:09] 2025-06-03 03:03:56,101 | WARNING  | found no corresponding commands to process id(s)
[2025-06-02 23:04:09] 2025-06-03 03:03:56,101 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-02 23:04:09] 2025-06-03 03:03:56,105 | INFO     | did not find any defunct processes belonging to 3644
[2025-06-02 23:04:09] 2025-06-03 03:03:56,108 | INFO     | did not find any defunct processes belonging to 3644
[2025-06-02 23:04:09] 2025-06-03 03:03:56,108 | INFO     | ready for new job
[2025-06-02 23:04:09] 2025-06-03 03:03:56,108 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-02 23:04:09] 2025-06-03 03:03:56,109 | INFO     | **************************************
[2025-06-02 23:04:09] 2025-06-03 03:03:56,109 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-02 23:04:09] 2025-06-03 03:03:56,109 | INFO     | **************************************
[2025-06-02 23:04:09] 2025-06-03 03:03:56,109 | INFO     | 
[2025-06-02 23:04:09] 2025-06-03 03:03:56,110 | INFO     | architecture information:
[2025-06-02 23:04:09] 2025-06-03 03:03:56,110 | INFO     | executing command: cat /etc/os-release
[2025-06-02 23:04:09] 2025-06-03 03:03:56,125 | INFO     | cat /etc/os-release:
[2025-06-02 23:04:09] NAME="CentOS Linux"
[2025-06-02 23:04:09] VERSION="7 (Core)"
[2025-06-02 23:04:09] ID="centos"
[2025-06-02 23:04:09] ID_LIKE="rhel fedora"
[2025-06-02 23:04:09] VERSION_ID="7"
[2025-06-02 23:04:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-02 23:04:09] ANSI_COLOR="0;31"
[2025-06-02 23:04:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-02 23:04:09] HOME_URL="https://www.centos.org/"
[2025-06-02 23:04:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-02 23:04:09] 
[2025-06-02 23:04:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-02 23:04:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-02 23:04:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-02 23:04:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-02 23:04:09] 
[2025-06-02 23:04:09] 2025-06-03 03:03:56,125 | INFO     | **************************************
[2025-06-02 23:04:09] 2025-06-03 03:03:56,628 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-02 23:04:09] 2025-06-03 03:03:56,645 | INFO     | sufficient remaining disk space (29413605376 B)
[2025-06-02 23:04:09] 2025-06-03 03:03:56,645 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-02 23:04:09] 2025-06-03 03:03:56,645 | INFO     | current server update state: UPDATING_FINAL
[2025-06-02 23:04:09] 2025-06-03 03:03:56,646 | INFO     | update_server=False
[2025-06-02 23:04:09] 2025-06-03 03:03:56,646 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-02 23:04:09] 2025-06-03 03:03:56,646 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-02 23:04:09] 2025-06-03 03:03:56,646 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-02 23:04:09] 2025-06-03 03:03:56,647 | INFO     | found 0 job(s) in 20 queues
[2025-06-02 23:04:09] 2025-06-03 03:03:56,647 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-02 23:04:09] 2025-06-03 03:03:56,647 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-02 23:04:09] 2025-06-03 03:03:56,716 | INFO     | all data control threads have been joined
[2025-06-02 23:04:09] 2025-06-03 03:03:57,160 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-02 23:04:09] 2025-06-03 03:03:57,160 | INFO     | aborting loop
[2025-06-02 23:04:09] 2025-06-03 03:03:57,651 | INFO     | [job] retrieve thread has finished
[2025-06-02 23:04:09] 2025-06-03 03:03:57,652 | INFO     | [job] queue monitor thread has finished
[2025-06-02 23:04:09] 2025-06-03 03:03:57,721 | INFO     | [data] control thread has finished
[2025-06-02 23:04:09] 2025-06-03 03:03:57,727 | INFO     | all payload control threads have been joined
[2025-06-02 23:04:09] 2025-06-03 03:03:57,874 | INFO     | all job control threads have been joined
[2025-06-02 23:04:09] 2025-06-03 03:03:57,914 | INFO     | [payload] validate_post thread has finished
[2025-06-02 23:04:09] 2025-06-03 03:03:57,936 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-02 23:04:09] 2025-06-03 03:03:58,166 | INFO     | [job] job monitor thread has finished
[2025-06-02 23:04:09] 2025-06-03 03:03:58,272 | INFO     | [job] validate thread has finished
[2025-06-02 23:04:09] 2025-06-03 03:03:58,489 | INFO     | [payload] validate_pre thread has finished
[2025-06-02 23:04:09] 2025-06-03 03:03:58,526 | INFO     | [payload] execute_payloads thread has finished
[2025-06-02 23:04:09] 2025-06-03 03:03:58,591 | INFO     | [job] create_data_payload thread has finished
[2025-06-02 23:04:09] 2025-06-03 03:03:58,732 | INFO     | [payload] control thread has finished
[2025-06-02 23:04:09] 2025-06-03 03:03:58,879 | INFO     | [job] control thread has finished
[2025-06-02 23:04:09] 2025-06-03 03:03:58,882 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-02 23:04:09] 2025-06-03 03:03:58,914 | INFO     | [payload] failed_post thread has finished
[2025-06-02 23:04:09] 2025-06-03 03:03:58,987 | INFO     | [data] copytool_in thread has finished
[2025-06-02 23:04:09] 2025-06-03 03:03:59,070 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-02 23:04:09] 2025-06-03 03:03:59,942 | INFO     | [data] copytool_out thread has finished
[2025-06-02 23:04:09] 2025-06-03 03:04:02,888 | INFO     | [data] queue_monitor thread has finished
[2025-06-02 23:04:09] 2025-06-03 03:04:04,206 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139675301418816)>', '<ExcThread(monitor, started 139674249049856)>']
[2025-06-02 23:04:09] 2025-06-03 03:04:04,685 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-02 23:04:09] 2025-06-03 03:04:04,685 | INFO     | [monitor] control thread has ended
[2025-06-02 23:04:09] 2025-06-03 03:04:09,231 | INFO     | all workflow threads have been joined
[2025-06-02 23:04:09] 2025-06-03 03:04:09,232 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-02 23:04:09] 2025-06-03 03:04:09,238 | INFO     | traces error code: 0
[2025-06-02 23:04:09] 2025-06-03 03:04:09,238 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-02 23:04:09] 2025-06-03 03:04:09,315 [wrapper] ==== pilot stdout END ====
[2025-06-02 23:04:09] 2025-06-03 03:04:09,319 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-02 23:04:09] 2025-06-03 03:04:09,323 [wrapper] pilotpid: 29457
[2025-06-02 23:04:09] 2025-06-03 03:04:09,326 [wrapper] Pilot exit status: 0
[2025-06-02 23:04:09] 2025-06-03 03:04:09,341 [wrapper] pandaids: 6677397984
[2025-06-02 23:04:09] 2025-06-03 03:04:09,379 [wrapper] cleanup supervisor_pilot 10501 29458
[2025-06-02 23:04:09] 2025-06-03 03:04:09,383 [wrapper] Test setup, not cleaning
[2025-06-02 23:04:09] 2025-06-03 03:04:09,387 [wrapper] apfmon messages muted
[2025-06-02 23:04:09] 2025-06-03 03:04:09,390 [wrapper] ==== wrapper stdout END ====
[2025-06-02 23:04:09] 2025-06-03 03:04:09,394 [wrapper] ==== wrapper stderr END ====
[2025-06-02 23:04:09]  *** Error codes and diagnostics ***
[2025-06-02 23:04:09]     "exeErrorCode": 0,
[2025-06-02 23:04:09]     "exeErrorDiag": "",
[2025-06-02 23:04:09]     "pilotErrorCode": 0,
[2025-06-02 23:04:09]     "pilotErrorDiag": "",
[2025-06-02 23:04:09]  *** Listing of results directory ***
[2025-06-02 23:04:09] total 395620
[2025-06-02 23:04:09] -rw-r--r-- 1 boincer umatlas    495897 Jun  2 15:34 pilot3.tar.gz
[2025-06-02 23:04:09] -rw-r--r-- 1 boincer umatlas      5111 Jun  2 16:04 queuedata.json
[2025-06-02 23:04:09] -rwx------ 1 boincer umatlas     37140 Jun  2 16:05 runpilot2-wrapper.sh
[2025-06-02 23:04:09] -rw-r--r-- 1 boincer umatlas       100 Jun  2 21:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-02 23:04:09] -rwxr-xr-x 1 boincer umatlas      7986 Jun  2 21:56 run_atlas
[2025-06-02 23:04:09] -rw-r--r-- 1 boincer umatlas       105 Jun  2 21:56 job.xml
[2025-06-02 23:04:09] -rw-r--r-- 2 boincer umatlas 215562939 Jun  2 21:56 EVNT.45006593._000422.pool.root.1
[2025-06-02 23:04:09] -rw-r--r-- 2 boincer umatlas     15093 Jun  2 21:56 start_atlas.sh
[2025-06-02 23:04:09] drwxrwx--x 2 boincer umatlas      4096 Jun  2 21:56 shared
[2025-06-02 23:04:09] -rw-r--r-- 2 boincer umatlas    508880 Jun  2 21:56 input.tar.gz
[2025-06-02 23:04:09] -rw-r--r-- 1 boincer umatlas         0 Jun  2 21:56 boinc_lockfile
[2025-06-02 23:04:09] -rw-r--r-- 1 boincer umatlas      2524 Jun  2 21:56 pandaJob.out
[2025-06-02 23:04:09] -rw------- 1 boincer umatlas    988073 Jun  2 21:56 agis_schedconf.cvmfs.json
[2025-06-02 23:04:09] -rw------- 1 boincer umatlas   1603667 Jun  2 21:56 agis_ddmendpoints.agis.ALL.json
[2025-06-02 23:04:09] drwx------ 4 boincer umatlas      4096 Jun  2 21:56 pilot3
[2025-06-02 23:04:09] -rw-r--r-- 1 boincer umatlas      5867 Jun  2 23:02 init_data.xml
[2025-06-02 23:04:09] -rw------- 1 boincer umatlas 184215297 Jun  2 23:03 HITS.45006595._010543.pool.root.1
[2025-06-02 23:04:09] -rw------- 1 boincer umatlas      1048 Jun  2 23:03 memory_monitor_summary.json
[2025-06-02 23:04:09] -rw-r--r-- 1 boincer umatlas        27 Jun  2 23:03 wrapper_checkpoint.txt
[2025-06-02 23:04:09] -rw-r--r-- 1 boincer umatlas      8192 Jun  2 23:03 boinc_mmap_file
[2025-06-02 23:04:09] -rw-r--r-- 1 boincer umatlas       530 Jun  2 23:03 boinc_task_state.xml
[2025-06-02 23:04:09] -rw------- 1 boincer umatlas    361777 Jun  2 23:03 log.45006595._010543.job.log.tgz.1
[2025-06-02 23:04:09] -rw------- 1 boincer umatlas        95 Jun  2 23:03 pilot_heartbeat.json
[2025-06-02 23:04:09] -rw------- 1 boincer umatlas      7745 Jun  2 23:03 heartbeat.json
[2025-06-02 23:04:09] -rw------- 1 boincer umatlas      4476 Jun  2 23:04 pilotlog.txt
[2025-06-02 23:04:09] -rw------- 1 boincer umatlas    389931 Jun  2 23:04 log.45006595._010543.job.log.1
[2025-06-02 23:04:09] -rw------- 1 boincer umatlas       357 Jun  2 23:04 output.list
[2025-06-02 23:04:09] -rw-r--r-- 1 boincer umatlas       620 Jun  2 23:04 runtime_log
[2025-06-02 23:04:09] -rw------- 1 boincer umatlas    768000 Jun  2 23:04 result.tar.gz
[2025-06-02 23:04:09] -rw-r--r-- 1 boincer umatlas      8656 Jun  2 23:04 runtime_log.err
[2025-06-02 23:04:09] -rw------- 1 boincer umatlas       658 Jun  2 23:04 1sNODm3aQg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmIUgKDmbwLYXn.diag
[2025-06-02 23:04:09] -rw-r--r-- 1 boincer umatlas     21704 Jun  2 23:04 stderr.txt
[2025-06-02 23:04:09] HITS file was successfully produced:
[2025-06-02 23:04:09] -rw------- 1 boincer umatlas 184215297 Jun  2 23:03 shared/HITS.pool.root.1
[2025-06-02 23:04:09]  *** Contents of shared directory: ***
[2025-06-02 23:04:09] total 391680
[2025-06-02 23:04:09] -rw-r--r-- 2 boincer umatlas 215562939 Jun  2 21:56 ATLAS.root_0
[2025-06-02 23:04:09] -rw-r--r-- 2 boincer umatlas     15093 Jun  2 21:56 start_atlas.sh
[2025-06-02 23:04:09] -rw-r--r-- 2 boincer umatlas    508880 Jun  2 21:56 input.tar.gz
[2025-06-02 23:04:09] -rw------- 1 boincer umatlas 184215297 Jun  2 23:03 HITS.pool.root.1
[2025-06-02 23:04:09] -rw------- 1 boincer umatlas    768000 Jun  2 23:04 result.tar.gz
23:04:10 (25839): run_atlas exited; CPU time 42004.962120
23:04:10 (25839): called boinc_finish(0)

</stderr_txt>
]]>

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