Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:15:08 (588): wrapper (7.7.26015): starting
12:15:08 (588): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 12:15:08] Arguments: --nthreads 8
[2025-06-03 12:15:08] Threads: 8
[2025-06-03 12:15:08] Checking for CVMFS
[2025-06-03 12:15:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 12:15:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 12:15:09] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 12:15:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 12:15:11] 2.11.2.0 9777 31657 90032 146737 2 160 14100658 25165824 4634 130560 0 16738238 99.889 16707091 1953 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 12:15:11] CVMFS is ok
[2025-06-03 12:15:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 12:15:11] Checking for apptainer binary...
[2025-06-03 12:15:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 12:15:11] Running /usr/bin/apptainer --version
[2025-06-03 12:15:11] apptainer version 1.3.2-1.el7
[2025-06-03 12:15:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 12:15:24] cg-vwn477.simple-grid.lan
[2025-06-03 12:15:24] apptainer works
[2025-06-03 12:15:24] Set ATHENA_PROC_NUMBER=8
[2025-06-03 12:15:24] Set ATHENA_CORE_NUMBER=8
[2025-06-03 12:15:24] Starting ATLAS job with PandaID=6677402194
[2025-06-03 12:15:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 15:54:16]  *** The last 200 lines of the pilot log: ***
[2025-06-03 15:54:16] 2025-06-03 13:42:53,407 | INFO     | extracted standard info from prmon json
[2025-06-03 15:54:16] 2025-06-03 13:42:53,407 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 15:54:16] 2025-06-03 13:42:53,407 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 15:54:16] 2025-06-03 13:42:53,408 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 15:54:16] 2025-06-03 13:42:53,408 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 15:54:16] 2025-06-03 13:42:53,412 | INFO     | fitting pss+swap vs Time
[2025-06-03 15:54:16] 2025-06-03 13:42:53,412 | INFO     | sum of square deviations: 2334722845.0
[2025-06-03 15:54:16] 2025-06-03 13:42:53,414 | INFO     | sum of deviations: -37174618261.49999
[2025-06-03 15:54:16] 2025-06-03 13:42:53,414 | INFO     | mean x: 1748952129.5
[2025-06-03 15:54:16] 2025-06-03 13:42:53,414 | INFO     | mean y: 2532737.4948979593
[2025-06-03 15:54:16] 2025-06-03 13:42:53,414 | INFO     | -- intersect: 27850218346.533432
[2025-06-03 15:54:16] 2025-06-03 13:42:53,414 | INFO     | intersect: 27850218346.533432
[2025-06-03 15:54:16] 2025-06-03 13:42:53,415 | INFO     | chi2: 2.5111311951817314
[2025-06-03 15:54:16] 2025-06-03 13:42:53,415 | INFO     | sum of square deviations: 2160561440.0
[2025-06-03 15:54:16] 2025-06-03 13:42:53,423 | INFO     | sum of deviations: -22801610107.000004
[2025-06-03 15:54:16] 2025-06-03 13:42:53,424 | INFO     | mean x: 1748951977.0
[2025-06-03 15:54:16] 2025-06-03 13:42:53,424 | INFO     | mean y: 2545090.230366492
[2025-06-03 15:54:16] 2025-06-03 13:42:53,424 | INFO     | -- intersect: 18460210925.190765
[2025-06-03 15:54:16] 2025-06-03 13:42:53,424 | INFO     | intersect: 18460210925.190765
[2025-06-03 15:54:16] 2025-06-03 13:42:53,424 | INFO     | chi2: 1.7464454078388933
[2025-06-03 15:54:16] 2025-06-03 13:42:53,424 | INFO     | current chi2=1.7464454078388933 (change=30.451845320152522 %)
[2025-06-03 15:54:16] 2025-06-03 13:42:53,425 | INFO     | sum of square deviations: 1995283922.5
[2025-06-03 15:54:16] 2025-06-03 13:42:53,426 | INFO     | sum of deviations: -21492030265.0
[2025-06-03 15:54:16] 2025-06-03 13:42:53,426 | INFO     | mean x: 1748951824.5
[2025-06-03 15:54:16] 2025-06-03 13:42:53,426 | INFO     | mean y: 2546298.8172043012
[2025-06-03 15:54:16] 2025-06-03 13:42:53,426 | INFO     | -- intersect: 18841231420.423485
[2025-06-03 15:54:16] 2025-06-03 13:42:53,426 | INFO     | intersect: 18841231420.423485
[2025-06-03 15:54:16] 2025-06-03 13:42:53,427 | INFO     | chi2: 1.7452310736903065
[2025-06-03 15:54:16] 2025-06-03 13:42:53,434 | INFO     | current chi2=1.7452310736903065 (change=0.06953175536643336 %)
[2025-06-03 15:54:16] 2025-06-03 13:42:53,434 | INFO     | right removable region: 185
[2025-06-03 15:54:16] 2025-06-03 13:42:53,435 | INFO     | sum of square deviations: 2160561440.0
[2025-06-03 15:54:16] 2025-06-03 13:42:53,436 | INFO     | sum of deviations: -68461574412.00001
[2025-06-03 15:54:16] 2025-06-03 13:42:53,436 | INFO     | mean x: 1748952282.0
[2025-06-03 15:54:16] 2025-06-03 13:42:53,437 | INFO     | mean y: 2559833.54973822
[2025-06-03 15:54:16] 2025-06-03 13:42:53,437 | INFO     | -- intersect: 55421500753.45258
[2025-06-03 15:54:16] 2025-06-03 13:42:53,437 | INFO     | intersect: 55421500753.45258
[2025-06-03 15:54:16] 2025-06-03 13:42:53,437 | INFO     | chi2: 0.9751311155864075
[2025-06-03 15:54:16] 2025-06-03 13:42:53,437 | INFO     | current chi2=0.9751311155864075 (change=61.16765553876857 %)
[2025-06-03 15:54:16] 2025-06-03 13:42:53,438 | INFO     | sum of square deviations: 1995283922.5
[2025-06-03 15:54:16] 2025-06-03 13:42:53,439 | INFO     | sum of deviations: -66001836733.50001
[2025-06-03 15:54:16] 2025-06-03 13:42:53,439 | INFO     | mean x: 1748952434.5
[2025-06-03 15:54:16] 2025-06-03 13:42:53,439 | INFO     | mean y: 2557528.1129032257
[2025-06-03 15:54:16] 2025-06-03 13:42:53,439 | INFO     | -- intersect: 57856014740.303894
[2025-06-03 15:54:16] 2025-06-03 13:42:53,440 | INFO     | intersect: 57856014740.303894
[2025-06-03 15:54:16] 2025-06-03 13:42:53,440 | INFO     | chi2: 0.9630241686217966
[2025-06-03 15:54:16] 2025-06-03 13:42:53,440 | INFO     | current chi2=0.9630241686217966 (change=1.241571186796786 %)
[2025-06-03 15:54:16] 2025-06-03 13:42:53,440 | INFO     | left removable region: 20
[2025-06-03 15:54:16] 2025-06-03 13:42:53,441 | INFO     | sum of square deviations: 1392881930.0
[2025-06-03 15:54:16] 2025-06-03 13:42:53,442 | INFO     | sum of deviations: -40136535024.0
[2025-06-03 15:54:16] 2025-06-03 13:42:53,442 | INFO     | mean x: 1748952404.0
[2025-06-03 15:54:16] 2025-06-03 13:42:53,442 | INFO     | mean y: 2563275.8181818184
[2025-06-03 15:54:16] 2025-06-03 13:42:53,442 | INFO     | -- intersect: 50399433180.257965
[2025-06-03 15:54:16] 2025-06-03 13:42:53,442 | INFO     | intersect: 50399433180.257965
[2025-06-03 15:54:16] 2025-06-03 13:42:53,442 | INFO     | chi2: 0.1613998421965324
[2025-06-03 15:54:16] 2025-06-03 13:42:53,443 | INFO     | -- intersect: 50399433180.257965
[2025-06-03 15:54:16] 2025-06-03 13:42:53,443 | INFO     | current memory leak: -28.82 B/s (using 165 data points, chi2=0.16)
[2025-06-03 15:54:16] 2025-06-03 13:42:53,444 | INFO     | ..............................
[2025-06-03 15:54:16] 2025-06-03 13:42:53,444 | INFO     | . Timing measurements:
[2025-06-03 15:54:16] 2025-06-03 13:42:53,444 | INFO     | . get job = 0 s
[2025-06-03 15:54:16] 2025-06-03 13:42:53,451 | INFO     | . initial setup = 5 s
[2025-06-03 15:54:16] 2025-06-03 13:42:53,452 | INFO     | . payload setup = 42 s
[2025-06-03 15:54:16] 2025-06-03 13:42:53,452 | INFO     | . stage-in = 0 s
[2025-06-03 15:54:16] 2025-06-03 13:42:53,452 | INFO     | . payload execution = 11921 s
[2025-06-03 15:54:16] 2025-06-03 13:42:53,452 | INFO     | . stage-out = 2 s
[2025-06-03 15:54:16] 2025-06-03 13:42:53,452 | INFO     | . log creation = 0 s
[2025-06-03 15:54:16] 2025-06-03 13:42:53,452 | INFO     | ..............................
[2025-06-03 15:54:16] 2025-06-03 13:42:53,611 | INFO     | 
[2025-06-03 15:54:16] 2025-06-03 13:42:53,611 | INFO     | job summary report
[2025-06-03 15:54:16] 2025-06-03 13:42:53,611 | INFO     | --------------------------------------------------
[2025-06-03 15:54:16] 2025-06-03 13:42:53,611 | INFO     | PanDA job id: 6677402194
[2025-06-03 15:54:16] 2025-06-03 13:42:53,611 | INFO     | task id: 45006595
[2025-06-03 15:54:16] 2025-06-03 13:42:53,611 | INFO     | errors: (none)
[2025-06-03 15:54:16] 2025-06-03 13:42:53,611 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 15:54:16] 2025-06-03 13:42:53,612 | INFO     | pilot state: finished 
[2025-06-03 15:54:16] 2025-06-03 13:42:53,612 | INFO     | transexitcode: 0
[2025-06-03 15:54:16] 2025-06-03 13:42:53,612 | INFO     | exeerrorcode: 0
[2025-06-03 15:54:16] 2025-06-03 13:42:53,612 | INFO     | exeerrordiag: 
[2025-06-03 15:54:16] 2025-06-03 13:42:53,612 | INFO     | exitcode: 0
[2025-06-03 15:54:16] 2025-06-03 13:42:53,612 | INFO     | exitmsg: OK
[2025-06-03 15:54:16] 2025-06-03 13:42:53,612 | INFO     | cpuconsumptiontime: 44266 s
[2025-06-03 15:54:16] 2025-06-03 13:42:53,612 | INFO     | nevents: 400
[2025-06-03 15:54:16] 2025-06-03 13:42:53,612 | INFO     | neventsw: 0
[2025-06-03 15:54:16] 2025-06-03 13:42:53,612 | INFO     | pid: 11821
[2025-06-03 15:54:16] 2025-06-03 13:42:53,612 | INFO     | pgrp: 11821
[2025-06-03 15:54:16] 2025-06-03 13:42:53,613 | INFO     | corecount: 8
[2025-06-03 15:54:16] 2025-06-03 13:42:53,613 | INFO     | event service: False
[2025-06-03 15:54:16] 2025-06-03 13:42:53,613 | INFO     | sizes: {0: 2404955, 1: 2405210, 12: 2405210, 23: 2405238, 34: 2405266, 44: 2405294, 55: 2405450, 66: 2405478, 76: 2405506, 87: 2405562, 93: 2405796, 98: 2406104, 1
[2025-06-03 15:54:16] 2025-06-03 13:42:53,613 | INFO     | --------------------------------------------------
[2025-06-03 15:54:16] 2025-06-03 13:42:53,613 | INFO     | 
[2025-06-03 15:54:16] 2025-06-03 13:42:53,613 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-06-03 15:54:16] 2025-06-03 13:42:54,098 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 15:54:16] 2025-06-03 13:42:54,099 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 15:54:16] 2025-06-03 13:42:54,099 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 15:54:16] 2025-06-03 13:42:54,099 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 15:54:16] 2025-06-03 13:42:54,099 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 15:54:16] 2025-06-03 13:42:54,099 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 15:54:16] 2025-06-03 13:42:54,099 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 15:54:16] 2025-06-03 13:42:54,099 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 15:54:16] 2025-06-03 13:42:54,100 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 15:54:16] 2025-06-03 13:42:54,100 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 15:54:16] 2025-06-03 13:42:54,100 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 15:54:16] 2025-06-03 13:42:54,100 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 15:54:16] 2025-06-03 13:42:54,100 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 15:54:16] 2025-06-03 13:42:54,100 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 15:54:16] 2025-06-03 13:42:54,100 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 15:54:16] 2025-06-03 13:42:54,100 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 15:54:16] 2025-06-03 13:42:54,100 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 15:54:16] 2025-06-03 13:42:54,100 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 15:54:16] 2025-06-03 13:42:54,100 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 15:54:16] 2025-06-03 13:42:54,101 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 15:54:16] 2025-06-03 13:42:54,101 | INFO     | job 6677402194 has completed (purged errors)
[2025-06-03 15:54:16] 2025-06-03 13:42:54,101 | INFO     | overall cleanup function is called
[2025-06-03 15:54:16] 2025-06-03 13:42:55,109 | INFO     | --- collectZombieJob: --- 10, [11821]
[2025-06-03 15:54:16] 2025-06-03 13:42:55,109 | INFO     | zombie collector waiting for pid 11821
[2025-06-03 15:54:16] 2025-06-03 13:42:55,110 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 15:54:16] 2025-06-03 13:42:55,110 | INFO     | collected zombie processes
[2025-06-03 15:54:16] 2025-06-03 13:42:55,110 | INFO     | will attempt to kill all subprocesses of pid=11821
[2025-06-03 15:54:16] 2025-06-03 13:42:55,204 | INFO     | process IDs to be killed: [11821] (in reverse order)
[2025-06-03 15:54:16] 2025-06-03 13:42:55,924 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 15:54:16] 2025-06-03 13:42:55,924 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 15:54:16] 2025-06-03 13:42:55,928 | INFO     | did not find any defunct processes belonging to 11821
[2025-06-03 15:54:16] 2025-06-03 13:42:55,931 | INFO     | did not find any defunct processes belonging to 11821
[2025-06-03 15:54:16] 2025-06-03 13:42:55,931 | INFO     | ready for new job
[2025-06-03 15:54:16] 2025-06-03 13:42:55,931 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 15:54:16] 2025-06-03 13:42:55,936 | INFO     | **************************************
[2025-06-03 15:54:16] 2025-06-03 13:42:55,937 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 15:54:16] 2025-06-03 13:42:55,937 | INFO     | **************************************
[2025-06-03 15:54:16] 2025-06-03 13:42:55,937 | INFO     | 
[2025-06-03 15:54:16] 2025-06-03 13:42:55,938 | INFO     | pilot is running in a VM
[2025-06-03 15:54:16] 2025-06-03 13:42:55,938 | INFO     | architecture information:
[2025-06-03 15:54:16] 2025-06-03 13:42:55,957 | INFO     | executing command: cat /etc/os-release
[2025-06-03 15:54:16] 2025-06-03 13:42:56,268 | INFO     | cat /etc/os-release:
[2025-06-03 15:54:16] NAME="CentOS Linux"
[2025-06-03 15:54:16] VERSION="7 (Core)"
[2025-06-03 15:54:16] ID="centos"
[2025-06-03 15:54:16] ID_LIKE="rhel fedora"
[2025-06-03 15:54:16] VERSION_ID="7"
[2025-06-03 15:54:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 15:54:16] ANSI_COLOR="0;31"
[2025-06-03 15:54:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 15:54:16] HOME_URL="https://www.centos.org/"
[2025-06-03 15:54:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 15:54:16] 
[2025-06-03 15:54:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 15:54:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 15:54:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 15:54:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 15:54:16] 
[2025-06-03 15:54:16] 2025-06-03 13:42:56,268 | INFO     | **************************************
[2025-06-03 15:54:16] 2025-06-03 13:42:56,773 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-06-03 15:54:16] 2025-06-03 13:42:57,057 | INFO     | sufficient remaining disk space (496839426048 B)
[2025-06-03 15:54:16] 2025-06-03 13:42:57,057 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 15:54:16] 2025-06-03 13:42:57,057 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 15:54:16] 2025-06-03 13:42:57,057 | INFO     | update_server=False
[2025-06-03 15:54:16] 2025-06-03 13:42:57,057 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 15:54:16] 2025-06-03 13:42:57,058 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 15:54:16] 2025-06-03 13:42:57,059 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 15:54:16] 2025-06-03 13:42:57,059 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 15:54:16] 2025-06-03 13:42:57,059 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 15:54:16] 2025-06-03 13:42:57,354 | INFO     | all payload control threads have been joined
[2025-06-03 15:54:16] 2025-06-03 13:42:57,577 | INFO     | all data control threads have been joined
[2025-06-03 15:54:16] 2025-06-03 13:42:58,031 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 15:54:16] 2025-06-03 13:42:58,032 | INFO     | aborting loop
[2025-06-03 15:54:16] 2025-06-03 13:42:58,063 | INFO     | [job] retrieve thread has finished
[2025-06-03 15:54:16] 2025-06-03 13:42:58,150 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 15:54:16] 2025-06-03 13:42:58,276 | INFO     | [payload] validate_post thread has finished
[2025-06-03 15:54:16] 2025-06-03 13:42:58,360 | INFO     | [payload] control thread has finished
[2025-06-03 15:54:16] 2025-06-03 13:42:58,535 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 15:54:16] 2025-06-03 13:42:58,583 | INFO     | [data] control thread has finished
[2025-06-03 15:54:16] 2025-06-03 13:42:58,615 | INFO     | all job control threads have been joined
[2025-06-03 15:54:16] 2025-06-03 13:42:58,628 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 15:54:16] 2025-06-03 13:42:58,780 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 15:54:16] 2025-06-03 13:42:58,790 | INFO     | [job] validate thread has finished
[2025-06-03 15:54:16] 2025-06-03 13:42:58,964 | INFO     | [data] copytool_in thread has finished
[2025-06-03 15:54:16] 2025-06-03 13:42:59,037 | INFO     | [job] job monitor thread has finished
[2025-06-03 15:54:16] 2025-06-03 13:42:59,132 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 15:54:16] 2025-06-03 13:42:59,315 | INFO     | [payload] failed_post thread has finished
[2025-06-03 15:54:16] 2025-06-03 13:42:59,461 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 15:54:16] 2025-06-03 13:42:59,471 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 15:54:16] 2025-06-03 13:42:59,621 | INFO     | [job] control thread has finished
[2025-06-03 15:54:16] 2025-06-03 13:42:59,634 | INFO     | [job] queue monitor thread has finished
[2025-06-03 15:54:16] 2025-06-03 13:43:00,542 | INFO     | [data] copytool_out thread has finished
[2025-06-03 15:54:16] 2025-06-03 13:43:02,789 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 15:54:16] 2025-06-03 13:43:03,999 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140461632210752)>', '<ExcThread(monitor, started 140461050156800)>']
[2025-06-03 15:54:16] 2025-06-03 13:43:04,100 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 15:54:16] 2025-06-03 13:43:04,100 | INFO     | [monitor] control thread has ended
[2025-06-03 15:54:16] 2025-06-03 13:43:09,025 | INFO     | all workflow threads have been joined
[2025-06-03 15:54:16] 2025-06-03 13:43:09,025 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 15:54:16] 2025-06-03 13:43:09,026 | INFO     | traces error code: 0
[2025-06-03 15:54:16] 2025-06-03 13:43:09,026 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 15:54:16] 2025-06-03 13:43:09,370 [wrapper] ==== pilot stdout END ====
[2025-06-03 15:54:16] 2025-06-03 13:43:09,408 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 15:54:16] 2025-06-03 13:43:09,531 [wrapper] pilotpid: 5152
[2025-06-03 15:54:16] 2025-06-03 13:43:09,678 [wrapper] Pilot exit status: 0
[2025-06-03 15:54:16] 2025-06-03 13:43:10,210 [wrapper] pandaids: 6677402194
[2025-06-03 15:54:16] 2025-06-03 13:43:11,281 [wrapper] cleanup supervisor_pilot  5482 5153
[2025-06-03 15:54:16] 2025-06-03 13:43:11,363 [wrapper] Test setup, not cleaning
[2025-06-03 15:54:16] 2025-06-03 13:43:11,460 [wrapper] apfmon messages muted
[2025-06-03 15:54:16] 2025-06-03 13:43:11,548 [wrapper] ==== wrapper stdout END ====
[2025-06-03 15:54:16] 2025-06-03 13:43:11,661 [wrapper] ==== wrapper stderr END ====
[2025-06-03 15:54:16]  *** Error codes and diagnostics ***
[2025-06-03 15:54:16]     "exeErrorCode": 0,
[2025-06-03 15:54:16]     "exeErrorDiag": "",
[2025-06-03 15:54:16]     "pilotErrorCode": 0,
[2025-06-03 15:54:16]     "pilotErrorDiag": "",
[2025-06-03 15:54:16]  *** Listing of results directory ***
[2025-06-03 15:54:16] total 393456
[2025-06-03 15:54:16] -rw-r--r--. 1 boinc boinc    495897 Jun  2 23:29 pilot3.tar.gz
[2025-06-03 15:54:16] -rwx------. 1 boinc boinc     37140 Jun  2 23:40 runpilot2-wrapper.sh
[2025-06-03 15:54:16] -rw-r--r--. 1 boinc boinc      5111 Jun  2 23:40 queuedata.json
[2025-06-03 15:54:16] -rw-r--r--. 1 boinc boinc       100 Jun  3 12:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 15:54:16] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 12:15 run_atlas
[2025-06-03 15:54:16] -rw-r--r--. 1 boinc boinc       105 Jun  3 12:15 job.xml
[2025-06-03 15:54:16] -rw-r--r--. 1 boinc boinc      6392 Jun  3 12:15 init_data.xml
[2025-06-03 15:54:16] -rw-r--r--. 2 boinc boinc 216606494 Jun  3 12:15 EVNT.45006593._000504.pool.root.1
[2025-06-03 15:54:16] -rw-r--r--. 2 boinc boinc     15093 Jun  3 12:15 start_atlas.sh
[2025-06-03 15:54:16] drwxrwx--x. 2 boinc boinc        68 Jun  3 12:15 shared
[2025-06-03 15:54:16] -rw-r--r--. 2 boinc boinc    508875 Jun  3 12:15 input.tar.gz
[2025-06-03 15:54:16] -rw-r--r--. 1 boinc boinc         0 Jun  3 12:15 boinc_lockfile
[2025-06-03 15:54:16] -rw-r--r--. 1 boinc boinc      2524 Jun  3 12:15 pandaJob.out
[2025-06-03 15:54:16] -rw-------. 1 boinc boinc    985490 Jun  3 12:18 agis_schedconf.cvmfs.json
[2025-06-03 15:54:16] drwx------. 4 boinc boinc      4096 Jun  3 12:18 pilot3
[2025-06-03 15:54:16] -rw-------. 1 boinc boinc 179584510 Jun  3 15:40 HITS.45006595._012599.pool.root.1
[2025-06-03 15:54:16] -rw-r--r--. 1 boinc boinc       531 Jun  3 15:40 boinc_task_state.xml
[2025-06-03 15:54:16] -rw-------. 1 boinc boinc      1019 Jun  3 15:41 memory_monitor_summary.json
[2025-06-03 15:54:16] -rw-------. 1 boinc boinc   1603667 Jun  3 15:41 agis_ddmendpoints.agis.ALL.json
[2025-06-03 15:54:16] -rw-------. 1 boinc boinc    380596 Jun  3 15:41 log.45006595._012599.job.log.tgz.1
[2025-06-03 15:54:16] -rw-------. 1 boinc boinc        95 Jun  3 15:42 pilot_heartbeat.json
[2025-06-03 15:54:16] -rw-------. 1 boinc boinc      7692 Jun  3 15:42 heartbeat.json
[2025-06-03 15:54:16] -rw-------. 1 boinc boinc      4539 Jun  3 15:43 pilotlog.txt
[2025-06-03 15:54:16] -rw-------. 1 boinc boinc   1064606 Jun  3 15:43 log.45006595._012599.job.log.1
[2025-06-03 15:54:16] -rw-------. 1 boinc boinc       357 Jun  3 15:43 output.list
[2025-06-03 15:54:16] -rw-r--r--. 1 boinc boinc       620 Jun  3 15:43 runtime_log
[2025-06-03 15:54:16] -rw-------. 1 boinc boinc   1464320 Jun  3 15:43 result.tar.gz
[2025-06-03 15:54:16] -rw-r--r--. 1 boinc boinc      8659 Jun  3 15:43 runtime_log.err
[2025-06-03 15:54:16] -rw-------. 1 boinc boinc       656 Jun  3 15:43 mkaKDmN4Rg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmkgWKDmSG38Ho.diag
[2025-06-03 15:54:16] -rw-r--r--. 1 boinc boinc      8192 Jun  3 15:54 boinc_mmap_file
[2025-06-03 15:54:16] -rw-r--r--. 1 boinc boinc        28 Jun  3 15:54 wrapper_checkpoint.txt
[2025-06-03 15:54:16] -rw-r--r--. 1 boinc boinc     20513 Jun  3 15:54 stderr.txt
[2025-06-03 15:54:16] HITS file was successfully produced:
[2025-06-03 15:54:16] -rw-------. 1 boinc boinc 179584510 Jun  3 15:40 shared/HITS.pool.root.1
[2025-06-03 15:54:16]  *** Contents of shared directory: ***
[2025-06-03 15:54:16] total 388856
[2025-06-03 15:54:16] -rw-r--r--. 2 boinc boinc 216606494 Jun  3 12:15 ATLAS.root_0
[2025-06-03 15:54:16] -rw-r--r--. 2 boinc boinc     15093 Jun  3 12:15 start_atlas.sh
[2025-06-03 15:54:16] -rw-r--r--. 2 boinc boinc    508875 Jun  3 12:15 input.tar.gz
[2025-06-03 15:54:16] -rw-------. 1 boinc boinc 179584510 Jun  3 15:40 HITS.pool.root.1
[2025-06-03 15:54:16] -rw-------. 1 boinc boinc   1464320 Jun  3 15:43 result.tar.gz
15:54:18 (588): run_atlas exited; CPU time 44409.263500
15:54:18 (588): called boinc_finish(0)

</stderr_txt>
]]>

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