Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:36:33 (10830): wrapper (7.7.26015): starting
10:36:33 (10830): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 10:36:33] Arguments: --nthreads 8
[2025-06-03 10:36:33] Threads: 8
[2025-06-03 10:36:33] Checking for CVMFS
[2025-06-03 10:36:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 10:36:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 10:36:34] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 10:36:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 10:36:34] 2.11.2.0 20954 31678 88076 146735 3 108 16986703 25165824 3972 130560 0 15964921 99.819 17264080 1987 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 10:36:34] CVMFS is ok
[2025-06-03 10:36:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 10:36:34] Checking for apptainer binary...
[2025-06-03 10:36:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 10:36:34] Running /usr/bin/apptainer --version
[2025-06-03 10:36:34] apptainer version 1.3.2-1.el7
[2025-06-03 10:36:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 10:36:36] cg-vwn319.simple-grid.lan
[2025-06-03 10:36:36] apptainer works
[2025-06-03 10:36:36] Set ATHENA_PROC_NUMBER=8
[2025-06-03 10:36:36] Set ATHENA_CORE_NUMBER=8
[2025-06-03 10:36:36] Starting ATLAS job with PandaID=6677401362
[2025-06-03 10:36:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 14:10:26]  *** The last 200 lines of the pilot log: ***
[2025-06-03 14:10:26] 2025-06-03 12:10:14,017 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 14:10:26] 2025-06-03 12:10:14,017 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 14:10:26] 2025-06-03 12:10:14,018 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 14:10:26] 2025-06-03 12:10:14,018 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 14:10:26] 2025-06-03 12:10:14,022 | INFO     | fitting pss+swap vs Time
[2025-06-03 14:10:26] 2025-06-03 12:10:14,023 | INFO     | sum of square deviations: 2830787960.0
[2025-06-03 14:10:26] 2025-06-03 12:10:14,024 | INFO     | sum of deviations: -25975559545.0
[2025-06-03 14:10:26] 2025-06-03 12:10:14,025 | INFO     | mean x: 1748946220.0
[2025-06-03 14:10:26] 2025-06-03 12:10:14,025 | INFO     | mean y: 2542707.4449760765
[2025-06-03 14:10:26] 2025-06-03 12:10:14,025 | INFO     | -- intersect: 16051027200.297161
[2025-06-03 14:10:26] 2025-06-03 12:10:14,025 | INFO     | intersect: 16051027200.297161
[2025-06-03 14:10:26] 2025-06-03 12:10:14,025 | INFO     | chi2: 2.094134127211026
[2025-06-03 14:10:26] 2025-06-03 12:10:14,026 | INFO     | sum of square deviations: 2632440055.0
[2025-06-03 14:10:26] 2025-06-03 12:10:14,027 | INFO     | sum of deviations: -24699937853.999996
[2025-06-03 14:10:26] 2025-06-03 12:10:14,027 | INFO     | mean x: 1748946067.5
[2025-06-03 14:10:26] 2025-06-03 12:10:14,027 | INFO     | mean y: 2543690.0098039214
[2025-06-03 14:10:26] 2025-06-03 12:10:14,028 | INFO     | -- intersect: 16412740418.021406
[2025-06-03 14:10:26] 2025-06-03 12:10:14,028 | INFO     | intersect: 16412740418.021406
[2025-06-03 14:10:26] 2025-06-03 12:10:14,028 | INFO     | chi2: 2.0925707622451273
[2025-06-03 14:10:26] 2025-06-03 12:10:14,028 | INFO     | current chi2=2.0925707622451273 (change=0.07465448108526415 %)
[2025-06-03 14:10:26] 2025-06-03 12:10:14,028 | INFO     | right removable region: 203
[2025-06-03 14:10:26] 2025-06-03 12:10:14,029 | INFO     | sum of square deviations: 2632440055.0
[2025-06-03 14:10:26] 2025-06-03 12:10:14,030 | INFO     | sum of deviations: -65984825694.0
[2025-06-03 14:10:26] 2025-06-03 12:10:14,030 | INFO     | mean x: 1748946372.5
[2025-06-03 14:10:26] 2025-06-03 12:10:14,030 | INFO     | mean y: 2573215.9901960786
[2025-06-03 14:10:26] 2025-06-03 12:10:14,031 | INFO     | -- intersect: 43841718315.75054
[2025-06-03 14:10:26] 2025-06-03 12:10:14,031 | INFO     | intersect: 43841718315.75054
[2025-06-03 14:10:26] 2025-06-03 12:10:14,031 | INFO     | chi2: 0.23339071648954376
[2025-06-03 14:10:26] 2025-06-03 12:10:14,031 | INFO     | current chi2=0.23339071648954376 (change=88.85502540372741 %)
[2025-06-03 14:10:26] 2025-06-03 12:10:14,032 | INFO     | sum of square deviations: 2443580700.0
[2025-06-03 14:10:26] 2025-06-03 12:10:14,033 | INFO     | sum of deviations: -65723864949.0
[2025-06-03 14:10:26] 2025-06-03 12:10:14,033 | INFO     | mean x: 1748946525.0
[2025-06-03 14:10:26] 2025-06-03 12:10:14,033 | INFO     | mean y: 2572962.40201005
[2025-06-03 14:10:26] 2025-06-03 12:10:14,033 | INFO     | -- intersect: 47043182348.50612
[2025-06-03 14:10:26] 2025-06-03 12:10:14,034 | INFO     | intersect: 47043182348.50612
[2025-06-03 14:10:26] 2025-06-03 12:10:14,034 | INFO     | chi2: 0.20549142405408866
[2025-06-03 14:10:26] 2025-06-03 12:10:14,034 | INFO     | current chi2=0.20549142405408866 (change=11.953899818763801 %)
[2025-06-03 14:10:26] 2025-06-03 12:10:14,034 | INFO     | left removable region: 20
[2025-06-03 14:10:26] 2025-06-03 12:10:14,035 | INFO     | sum of square deviations: 1900284932.0
[2025-06-03 14:10:26] 2025-06-03 12:10:14,036 | INFO     | sum of deviations: -53396613581.0
[2025-06-03 14:10:26] 2025-06-03 12:10:14,036 | INFO     | mean x: 1748946647.0
[2025-06-03 14:10:26] 2025-06-03 12:10:14,036 | INFO     | mean y: 2566096.306010929
[2025-06-03 14:10:26] 2025-06-03 12:10:14,036 | INFO     | -- intersect: 49146684807.68072
[2025-06-03 14:10:26] 2025-06-03 12:10:14,037 | INFO     | intersect: 49146684807.68072
[2025-06-03 14:10:26] 2025-06-03 12:10:14,037 | INFO     | chi2: 0.19713339697497867
[2025-06-03 14:10:26] 2025-06-03 12:10:14,037 | INFO     | -- intersect: 49146684807.68072
[2025-06-03 14:10:26] 2025-06-03 12:10:14,037 | INFO     | current memory leak: -28.10 B/s (using 183 data points, chi2=0.20)
[2025-06-03 14:10:26] 2025-06-03 12:10:14,038 | INFO     | ..............................
[2025-06-03 14:10:26] 2025-06-03 12:10:14,038 | INFO     | . Timing measurements:
[2025-06-03 14:10:26] 2025-06-03 12:10:14,038 | INFO     | . get job = 0 s
[2025-06-03 14:10:26] 2025-06-03 12:10:14,039 | INFO     | . initial setup = 2 s
[2025-06-03 14:10:26] 2025-06-03 12:10:14,039 | INFO     | . payload setup = 14 s
[2025-06-03 14:10:26] 2025-06-03 12:10:14,039 | INFO     | . stage-in = 0 s
[2025-06-03 14:10:26] 2025-06-03 12:10:14,039 | INFO     | . payload execution = 12745 s
[2025-06-03 14:10:26] 2025-06-03 12:10:14,039 | INFO     | . stage-out = 1 s
[2025-06-03 14:10:26] 2025-06-03 12:10:14,039 | INFO     | . log creation = 0 s
[2025-06-03 14:10:26] 2025-06-03 12:10:14,039 | INFO     | ..............................
[2025-06-03 14:10:26] 2025-06-03 12:10:14,187 | INFO     | 
[2025-06-03 14:10:26] 2025-06-03 12:10:14,187 | INFO     | job summary report
[2025-06-03 14:10:26] 2025-06-03 12:10:14,188 | INFO     | --------------------------------------------------
[2025-06-03 14:10:26] 2025-06-03 12:10:14,188 | INFO     | PanDA job id: 6677401362
[2025-06-03 14:10:26] 2025-06-03 12:10:14,188 | INFO     | task id: 45006595
[2025-06-03 14:10:26] 2025-06-03 12:10:14,188 | INFO     | errors: (none)
[2025-06-03 14:10:26] 2025-06-03 12:10:14,188 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 14:10:26] 2025-06-03 12:10:14,188 | INFO     | pilot state: finished 
[2025-06-03 14:10:26] 2025-06-03 12:10:14,188 | INFO     | transexitcode: 0
[2025-06-03 14:10:26] 2025-06-03 12:10:14,188 | INFO     | exeerrorcode: 0
[2025-06-03 14:10:26] 2025-06-03 12:10:14,188 | INFO     | exeerrordiag: 
[2025-06-03 14:10:26] 2025-06-03 12:10:14,189 | INFO     | exitcode: 0
[2025-06-03 14:10:26] 2025-06-03 12:10:14,189 | INFO     | exitmsg: OK
[2025-06-03 14:10:26] 2025-06-03 12:10:14,189 | INFO     | cpuconsumptiontime: 48272 s
[2025-06-03 14:10:26] 2025-06-03 12:10:14,189 | INFO     | nevents: 400
[2025-06-03 14:10:26] 2025-06-03 12:10:14,189 | INFO     | neventsw: 0
[2025-06-03 14:10:26] 2025-06-03 12:10:14,189 | INFO     | pid: 23135
[2025-06-03 14:10:26] 2025-06-03 12:10:14,189 | INFO     | pgrp: 23135
[2025-06-03 14:10:26] 2025-06-03 12:10:14,189 | INFO     | corecount: 8
[2025-06-03 14:10:26] 2025-06-03 12:10:14,189 | INFO     | event service: False
[2025-06-03 14:10:26] 2025-06-03 12:10:14,189 | INFO     | sizes: {0: 2404354, 1: 2405210, 2: 2405210, 11: 2405444, 12: 2405472, 12764: 2434810, 12766: 2443751, 12767: 2443807, 12776: 2443977}
[2025-06-03 14:10:26] 2025-06-03 12:10:14,190 | INFO     | --------------------------------------------------
[2025-06-03 14:10:26] 2025-06-03 12:10:14,190 | INFO     | 
[2025-06-03 14:10:26] 2025-06-03 12:10:14,190 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-06-03 14:10:26] 2025-06-03 12:10:14,210 | INFO     | sufficient remaining disk space (497195941888 B)
[2025-06-03 14:10:26] 2025-06-03 12:10:14,211 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-03 14:10:26] 2025-06-03 12:10:14,212 | INFO     | size of work directory /var/lib/boinc/slots/8/PanDA_Pilot-6677401362: 3690868 B (within 2537553920 B limit)
[2025-06-03 14:10:26] 2025-06-03 12:10:14,212 | INFO     | pfn file=/var/lib/boinc/slots/8/PanDA_Pilot-6677401362/HITS.45006595._012016.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-03 14:10:26] 2025-06-03 12:10:14,212 | INFO     | total size of present files: 0 B (workdir size: 3690868 B)
[2025-06-03 14:10:26] 2025-06-03 12:10:14,212 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/8/PanDA_Pilot-6677401362/HITS.45006595._012016.pool.root.1 since it does not exist
[2025-06-03 14:10:26] 2025-06-03 12:10:14,227 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 14:10:26] 2025-06-03 12:10:14,228 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 14:10:26] 2025-06-03 12:10:14,228 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 14:10:26] 2025-06-03 12:10:14,228 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 14:10:26] 2025-06-03 12:10:14,228 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 14:10:26] 2025-06-03 12:10:14,228 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 14:10:26] 2025-06-03 12:10:14,228 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 14:10:26] 2025-06-03 12:10:14,228 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 14:10:26] 2025-06-03 12:10:14,228 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 14:10:26] 2025-06-03 12:10:14,229 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 14:10:26] 2025-06-03 12:10:14,229 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 14:10:26] 2025-06-03 12:10:14,229 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 14:10:26] 2025-06-03 12:10:14,229 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 14:10:26] 2025-06-03 12:10:14,229 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 14:10:26] 2025-06-03 12:10:14,229 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 14:10:26] 2025-06-03 12:10:14,229 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 14:10:26] 2025-06-03 12:10:14,229 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 14:10:26] 2025-06-03 12:10:14,229 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 14:10:26] 2025-06-03 12:10:14,230 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 14:10:26] 2025-06-03 12:10:14,230 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 14:10:26] 2025-06-03 12:10:14,230 | INFO     | job 6677401362 has completed (purged errors)
[2025-06-03 14:10:26] 2025-06-03 12:10:14,230 | INFO     | overall cleanup function is called
[2025-06-03 14:10:26] 2025-06-03 12:10:14,332 | INFO     | number of running child processes to parent process 23135: 1
[2025-06-03 14:10:26] 2025-06-03 12:10:14,333 | INFO     | maximum number of monitored processes: 6
[2025-06-03 14:10:26] 2025-06-03 12:10:14,333 | INFO     | aborting job monitoring since job object (job id=6677401362) has expired
[2025-06-03 14:10:26] 2025-06-03 12:10:15,243 | INFO     | --- collectZombieJob: --- 10, [23135]
[2025-06-03 14:10:26] 2025-06-03 12:10:15,243 | INFO     | zombie collector waiting for pid 23135
[2025-06-03 14:10:26] 2025-06-03 12:10:15,243 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 14:10:26] 2025-06-03 12:10:15,243 | INFO     | collected zombie processes
[2025-06-03 14:10:26] 2025-06-03 12:10:15,244 | INFO     | will attempt to kill all subprocesses of pid=23135
[2025-06-03 14:10:26] 2025-06-03 12:10:15,345 | INFO     | process IDs to be killed: [23135] (in reverse order)
[2025-06-03 14:10:26] 2025-06-03 12:10:15,479 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 14:10:26] 2025-06-03 12:10:15,479 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 14:10:26] 2025-06-03 12:10:15,482 | INFO     | did not find any defunct processes belonging to 23135
[2025-06-03 14:10:26] 2025-06-03 12:10:15,486 | INFO     | did not find any defunct processes belonging to 23135
[2025-06-03 14:10:26] 2025-06-03 12:10:15,486 | INFO     | ready for new job
[2025-06-03 14:10:26] 2025-06-03 12:10:15,486 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 14:10:26] 2025-06-03 12:10:15,488 | INFO     | **************************************
[2025-06-03 14:10:26] 2025-06-03 12:10:15,488 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 14:10:26] 2025-06-03 12:10:15,488 | INFO     | **************************************
[2025-06-03 14:10:26] 2025-06-03 12:10:15,488 | INFO     | 
[2025-06-03 14:10:26] 2025-06-03 12:10:15,490 | INFO     | pilot is running in a VM
[2025-06-03 14:10:26] 2025-06-03 12:10:15,490 | INFO     | architecture information:
[2025-06-03 14:10:26] 2025-06-03 12:10:15,490 | INFO     | executing command: cat /etc/os-release
[2025-06-03 14:10:26] 2025-06-03 12:10:15,516 | INFO     | cat /etc/os-release:
[2025-06-03 14:10:26] NAME="CentOS Linux"
[2025-06-03 14:10:26] VERSION="7 (Core)"
[2025-06-03 14:10:26] ID="centos"
[2025-06-03 14:10:26] ID_LIKE="rhel fedora"
[2025-06-03 14:10:26] VERSION_ID="7"
[2025-06-03 14:10:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 14:10:26] ANSI_COLOR="0;31"
[2025-06-03 14:10:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 14:10:26] HOME_URL="https://www.centos.org/"
[2025-06-03 14:10:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 14:10:26] 
[2025-06-03 14:10:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 14:10:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 14:10:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 14:10:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 14:10:26] 
[2025-06-03 14:10:26] 2025-06-03 12:10:15,517 | INFO     | **************************************
[2025-06-03 14:10:26] 2025-06-03 12:10:16,020 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-06-03 14:10:26] 2025-06-03 12:10:16,227 | INFO     | sufficient remaining disk space (497201184768 B)
[2025-06-03 14:10:26] 2025-06-03 12:10:16,227 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 14:10:26] 2025-06-03 12:10:16,227 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 14:10:26] 2025-06-03 12:10:16,228 | INFO     | update_server=False
[2025-06-03 14:10:26] 2025-06-03 12:10:16,228 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 14:10:26] 2025-06-03 12:10:16,228 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 14:10:26] 2025-06-03 12:10:16,229 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 14:10:26] 2025-06-03 12:10:16,229 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 14:10:26] 2025-06-03 12:10:16,229 | INFO     | aborting loop
[2025-06-03 14:10:26] 2025-06-03 12:10:16,229 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 14:10:26] 2025-06-03 12:10:16,230 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 14:10:26] 2025-06-03 12:10:16,230 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 14:10:26] 2025-06-03 12:10:16,230 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 14:10:26] 2025-06-03 12:10:16,364 | INFO     | all data control threads have been joined
[2025-06-03 14:10:26] 2025-06-03 12:10:16,783 | INFO     | all payload control threads have been joined
[2025-06-03 14:10:26] 2025-06-03 12:10:17,233 | INFO     | [job] retrieve thread has finished
[2025-06-03 14:10:26] 2025-06-03 12:10:17,239 | INFO     | [job] job monitor thread has finished
[2025-06-03 14:10:26] 2025-06-03 12:10:17,370 | INFO     | [data] control thread has finished
[2025-06-03 14:10:26] 2025-06-03 12:10:17,480 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 14:10:26] 2025-06-03 12:10:17,504 | INFO     | all job control threads have been joined
[2025-06-03 14:10:26] 2025-06-03 12:10:17,577 | INFO     | [data] copytool_in thread has finished
[2025-06-03 14:10:26] 2025-06-03 12:10:17,742 | INFO     | [job] validate thread has finished
[2025-06-03 14:10:26] 2025-06-03 12:10:17,790 | INFO     | [payload] control thread has finished
[2025-06-03 14:10:26] 2025-06-03 12:10:17,936 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 14:10:26] 2025-06-03 12:10:18,135 | INFO     | [payload] failed_post thread has finished
[2025-06-03 14:10:26] 2025-06-03 12:10:18,239 | INFO     | [data] copytool_out thread has finished
[2025-06-03 14:10:26] 2025-06-03 12:10:18,268 | INFO     | [payload] validate_post thread has finished
[2025-06-03 14:10:26] 2025-06-03 12:10:18,509 | INFO     | [job] control thread has finished
[2025-06-03 14:10:26] 2025-06-03 12:10:18,580 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 14:10:26] 2025-06-03 12:10:18,703 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 14:10:26] 2025-06-03 12:10:19,199 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 14:10:26] 2025-06-03 12:10:20,204 | INFO     | [job] queue monitor thread has finished
[2025-06-03 14:10:26] 2025-06-03 12:10:20,238 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 14:10:26] 2025-06-03 12:10:21,276 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139816709871424)>', '<ExcThread(monitor, started 139816108795648)>']
[2025-06-03 14:10:26] 2025-06-03 12:10:22,264 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 14:10:26] 2025-06-03 12:10:22,264 | INFO     | [monitor] control thread has ended
[2025-06-03 14:10:26] 2025-06-03 12:10:26,301 | INFO     | all workflow threads have been joined
[2025-06-03 14:10:26] 2025-06-03 12:10:26,301 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 14:10:26] 2025-06-03 12:10:26,302 | INFO     | traces error code: 0
[2025-06-03 14:10:26] 2025-06-03 12:10:26,302 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 14:10:26] 2025-06-03 12:10:26,538 [wrapper] ==== pilot stdout END ====
[2025-06-03 14:10:26] 2025-06-03 12:10:26,544 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 14:10:26] 2025-06-03 12:10:26,550 [wrapper] pilotpid: 14534
[2025-06-03 14:10:26] 2025-06-03 12:10:26,564 [wrapper] Pilot exit status: 0
[2025-06-03 14:10:26] 2025-06-03 12:10:26,607 [wrapper] pandaids: 6677401362
[2025-06-03 14:10:26] 2025-06-03 12:10:26,655 [wrapper] cleanup supervisor_pilot 32006 14535
[2025-06-03 14:10:26] 2025-06-03 12:10:26,666 [wrapper] Test setup, not cleaning
[2025-06-03 14:10:26] 2025-06-03 12:10:26,674 [wrapper] apfmon messages muted
[2025-06-03 14:10:26] 2025-06-03 12:10:26,683 [wrapper] ==== wrapper stdout END ====
[2025-06-03 14:10:26] 2025-06-03 12:10:26,694 [wrapper] ==== wrapper stderr END ====
[2025-06-03 14:10:26]  *** Error codes and diagnostics ***
[2025-06-03 14:10:26]     "exeErrorCode": 0,
[2025-06-03 14:10:26]     "exeErrorDiag": "",
[2025-06-03 14:10:26]     "pilotErrorCode": 0,
[2025-06-03 14:10:26]     "pilotErrorDiag": "",
[2025-06-03 14:10:26]  *** Listing of results directory ***
[2025-06-03 14:10:26] total 388864
[2025-06-03 14:10:26] -rw-r--r--. 1 boinc boinc    495897 Jun  2 23:10 pilot3.tar.gz
[2025-06-03 14:10:26] -rwx------. 1 boinc boinc     37140 Jun  2 23:12 runpilot2-wrapper.sh
[2025-06-03 14:10:26] -rw-r--r--. 1 boinc boinc      5111 Jun  2 23:12 queuedata.json
[2025-06-03 14:10:26] -rw-r--r--. 1 boinc boinc       100 Jun  3 10:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 14:10:26] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 10:36 run_atlas
[2025-06-03 14:10:26] -rw-r--r--. 1 boinc boinc       105 Jun  3 10:36 job.xml
[2025-06-03 14:10:26] -rw-r--r--. 2 boinc boinc 214708867 Jun  3 10:36 EVNT.45006593._000481.pool.root.1
[2025-06-03 14:10:26] -rw-r--r--. 1 boinc boinc      6391 Jun  3 10:36 init_data.xml
[2025-06-03 14:10:26] -rw-r--r--. 2 boinc boinc     15093 Jun  3 10:36 start_atlas.sh
[2025-06-03 14:10:26] drwxrwx--x. 2 boinc boinc        68 Jun  3 10:36 shared
[2025-06-03 14:10:26] -rw-r--r--. 2 boinc boinc    508872 Jun  3 10:36 input.tar.gz
[2025-06-03 14:10:26] -rw-r--r--. 1 boinc boinc         0 Jun  3 10:36 boinc_lockfile
[2025-06-03 14:10:26] -rw-r--r--. 1 boinc boinc      2524 Jun  3 10:36 pandaJob.out
[2025-06-03 14:10:26] -rw-------. 1 boinc boinc    985498 Jun  3 10:36 agis_schedconf.cvmfs.json
[2025-06-03 14:10:26] drwx------. 4 boinc boinc      4096 Jun  3 10:36 pilot3
[2025-06-03 14:10:26] -rw-------. 1 boinc boinc 176691603 Jun  3 14:09 HITS.45006595._012016.pool.root.1
[2025-06-03 14:10:26] -rw-r--r--. 1 boinc boinc       531 Jun  3 14:09 boinc_task_state.xml
[2025-06-03 14:10:26] -rw-------. 1 boinc boinc      1017 Jun  3 14:09 memory_monitor_summary.json
[2025-06-03 14:10:26] -rw-------. 1 boinc boinc   1603667 Jun  3 14:10 agis_ddmendpoints.agis.ALL.json
[2025-06-03 14:10:26] -rw-------. 1 boinc boinc    377115 Jun  3 14:10 log.45006595._012016.job.log.tgz.1
[2025-06-03 14:10:26] -rw-------. 1 boinc boinc        95 Jun  3 14:10 pilot_heartbeat.json
[2025-06-03 14:10:26] -rw-------. 1 boinc boinc      7704 Jun  3 14:10 heartbeat.json
[2025-06-03 14:10:26] -rw-r--r--. 1 boinc boinc        28 Jun  3 14:10 wrapper_checkpoint.txt
[2025-06-03 14:10:26] -rw-r--r--. 1 boinc boinc      8192 Jun  3 14:10 boinc_mmap_file
[2025-06-03 14:10:26] -rw-------. 1 boinc boinc      4539 Jun  3 14:10 pilotlog.txt
[2025-06-03 14:10:26] -rw-------. 1 boinc boinc   1109035 Jun  3 14:10 log.45006595._012016.job.log.1
[2025-06-03 14:10:26] -rw-------. 1 boinc boinc       357 Jun  3 14:10 output.list
[2025-06-03 14:10:26] -rw-r--r--. 1 boinc boinc       620 Jun  3 14:10 runtime_log
[2025-06-03 14:10:26] -rw-------. 1 boinc boinc   1505280 Jun  3 14:10 result.tar.gz
[2025-06-03 14:10:26] -rw-r--r--. 1 boinc boinc      8659 Jun  3 14:10 runtime_log.err
[2025-06-03 14:10:26] -rw-------. 1 boinc boinc       656 Jun  3 14:10 LbtLDmGdRg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmhjgKDmMrUGsn.diag
[2025-06-03 14:10:26] -rw-r--r--. 1 boinc boinc     20935 Jun  3 14:10 stderr.txt
[2025-06-03 14:10:26] HITS file was successfully produced:
[2025-06-03 14:10:26] -rw-------. 1 boinc boinc 176691603 Jun  3 14:09 shared/HITS.pool.root.1
[2025-06-03 14:10:26]  *** Contents of shared directory: ***
[2025-06-03 14:10:26] total 384220
[2025-06-03 14:10:26] -rw-r--r--. 2 boinc boinc 214708867 Jun  3 10:36 ATLAS.root_0
[2025-06-03 14:10:26] -rw-r--r--. 2 boinc boinc     15093 Jun  3 10:36 start_atlas.sh
[2025-06-03 14:10:26] -rw-r--r--. 2 boinc boinc    508872 Jun  3 10:36 input.tar.gz
[2025-06-03 14:10:26] -rw-------. 1 boinc boinc 176691603 Jun  3 14:09 HITS.pool.root.1
[2025-06-03 14:10:26] -rw-------. 1 boinc boinc   1505280 Jun  3 14:10 result.tar.gz
14:10:28 (10830): run_atlas exited; CPU time 48429.925558
14:10:28 (10830): called boinc_finish(0)

</stderr_txt>
]]>

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