Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
11:41:43 (996809): wrapper (7.7.26015): starting
11:41:43 (996809): wrapper: running run_atlas (--nthreads 2)
[2025-06-03 11:41:43] Arguments: --nthreads 2
[2025-06-03 11:41:43] Threads: 2
[2025-06-03 11:41:43] Checking for CVMFS
[2025-06-03 11:41:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 11:41:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 11:41:43] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 11:41:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 11:41:43] 2.9.2.0 755054 994 54508 146735 2 56 27106114 36864001 0 130560 0 651903 99.991 223696 47706 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-06-03 11:41:43] CVMFS is ok
[2025-06-03 11:41:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 11:41:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 11:41:43] Further information can be found at the LHC@home message board.
[2025-06-03 11:41:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 11:41:43] Checking for apptainer binary...
[2025-06-03 11:41:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 11:41:43] Running /usr/bin/apptainer --version
[2025-06-03 11:41:43] apptainer version 1.3.6-6.1
[2025-06-03 11:41:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 11:41:44] thA366
[2025-06-03 11:41:44] apptainer works
[2025-06-03 11:41:44] Set ATHENA_PROC_NUMBER=2
[2025-06-03 11:41:44] Set ATHENA_CORE_NUMBER=2
[2025-06-03 11:41:44] Starting ATLAS job with PandaID=6677394117
[2025-06-03 11:41:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 13:31:59]  *** The last 200 lines of the pilot log: ***
[2025-06-03 13:31:59] 2025-06-03 11:31:38,286 | INFO     | monitor loop #508: job 0:6677394117 is in state 'finished'
[2025-06-03 13:31:59] 2025-06-03 11:31:38,286 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 13:31:59] 2025-06-03 11:31:40,789 | INFO     | monitor loop #509: job 0:6677394117 is in state 'finished'
[2025-06-03 13:31:59] 2025-06-03 11:31:40,790 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 13:31:59] 2025-06-03 11:31:42,280 | INFO     | PID=1000430 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-03 13:31:59] 2025-06-03 11:31:43,293 | INFO     | monitor loop #510: job 0:6677394117 is in state 'finished'
[2025-06-03 13:31:59] 2025-06-03 11:31:43,294 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 13:31:59] 2025-06-03 11:31:45,478 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 13:31:59] 2025-06-03 11:31:45,478 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6677394117/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 13:31:59] 2025-06-03 11:31:45,478 | INFO     | extracted standard info from prmon json
[2025-06-03 13:31:59] 2025-06-03 11:31:45,478 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 13:31:59] 2025-06-03 11:31:45,478 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 13:31:59] 2025-06-03 11:31:45,479 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 13:31:59] 2025-06-03 11:31:45,479 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 13:31:59] 2025-06-03 11:31:45,480 | INFO     | fitting pss+swap vs Time
[2025-06-03 13:31:59] 2025-06-03 11:31:45,480 | INFO     | sum of square deviations: 390582207.0
[2025-06-03 13:31:59] 2025-06-03 11:31:45,480 | INFO     | sum of deviations: 12894101005.000002
[2025-06-03 13:31:59] 2025-06-03 11:31:45,480 | INFO     | mean x: 1748947011.5
[2025-06-03 13:31:59] 2025-06-03 11:31:45,480 | INFO     | mean y: 2378059.314814815
[2025-06-03 13:31:59] 2025-06-03 11:31:45,480 | INFO     | -- intersect: -57734761560.75472
[2025-06-03 13:31:59] 2025-06-03 11:31:45,480 | INFO     | intersect: -57734761560.75472
[2025-06-03 13:31:59] 2025-06-03 11:31:45,480 | INFO     | chi2: 1.4432143113963647
[2025-06-03 13:31:59] 2025-06-03 11:31:45,481 | INFO     | sum of square deviations: 338804492.0
[2025-06-03 13:31:59] 2025-06-03 11:31:45,481 | INFO     | sum of deviations: 14049159612.000004
[2025-06-03 13:31:59] 2025-06-03 11:31:45,481 | INFO     | mean x: 1748946859.0
[2025-06-03 13:31:59] 2025-06-03 11:31:45,481 | INFO     | mean y: 2381484.009708738
[2025-06-03 13:31:59] 2025-06-03 11:31:45,481 | INFO     | -- intersect: -72520959130.36758
[2025-06-03 13:31:59] 2025-06-03 11:31:45,481 | INFO     | intersect: -72520959130.36758
[2025-06-03 13:31:59] 2025-06-03 11:31:45,481 | INFO     | chi2: 1.4292172071005116
[2025-06-03 13:31:59] 2025-06-03 11:31:45,481 | INFO     | current chi2=1.4292172071005116 (change=0.9698562566435731 %)
[2025-06-03 13:31:59] 2025-06-03 11:31:45,481 | INFO     | right removable region: 102
[2025-06-03 13:31:59] 2025-06-03 11:31:45,481 | INFO     | sum of square deviations: 338804492.0
[2025-06-03 13:31:59] 2025-06-03 11:31:45,482 | INFO     | sum of deviations: -2312862946.0
[2025-06-03 13:31:59] 2025-06-03 11:31:45,482 | INFO     | mean x: 1748947164.0
[2025-06-03 13:31:59] 2025-06-03 11:31:45,482 | INFO     | mean y: 2421881.203883495
[2025-06-03 13:31:59] 2025-06-03 11:31:45,482 | INFO     | -- intersect: 11941682385.83552
[2025-06-03 13:31:59] 2025-06-03 11:31:45,482 | INFO     | intersect: 11941682385.83552
[2025-06-03 13:31:59] 2025-06-03 11:31:45,482 | INFO     | chi2: 0.030968080252601927
[2025-06-03 13:31:59] 2025-06-03 11:31:45,482 | INFO     | current chi2=0.030968080252601927 (change=97.85422857796918 %)
[2025-06-03 13:31:59] 2025-06-03 11:31:45,482 | INFO     | sum of square deviations: 291817564.5
[2025-06-03 13:31:59] 2025-06-03 11:31:45,482 | INFO     | sum of deviations: -2438369622.5
[2025-06-03 13:31:59] 2025-06-03 11:31:45,482 | INFO     | mean x: 1748947316.5
[2025-06-03 13:31:59] 2025-06-03 11:31:45,483 | INFO     | mean y: 2422283.7448979593
[2025-06-03 13:31:59] 2025-06-03 11:31:45,483 | INFO     | -- intersect: 14616278770.462622
[2025-06-03 13:31:59] 2025-06-03 11:31:45,483 | INFO     | intersect: 14616278770.462622
[2025-06-03 13:31:59] 2025-06-03 11:31:45,483 | INFO     | chi2: 0.030148601580391128
[2025-06-03 13:31:59] 2025-06-03 11:31:45,483 | INFO     | current chi2=0.030148601580391128 (change=2.6462043030321425 %)
[2025-06-03 13:31:59] 2025-06-03 11:31:45,483 | INFO     | left removable region: 20
[2025-06-03 13:31:59] 2025-06-03 11:31:45,483 | INFO     | sum of square deviations: 170944600.5
[2025-06-03 13:31:59] 2025-06-03 11:31:45,483 | INFO     | sum of deviations: -625201901.5
[2025-06-03 13:31:59] 2025-06-03 11:31:45,483 | INFO     | mean x: 1748947438.5
[2025-06-03 13:31:59] 2025-06-03 11:31:45,483 | INFO     | mean y: 2431085.7926829266
[2025-06-03 13:31:59] 2025-06-03 11:31:45,483 | INFO     | -- intersect: 6398920129.468293
[2025-06-03 13:31:59] 2025-06-03 11:31:45,483 | INFO     | intersect: 6398920129.468293
[2025-06-03 13:31:59] 2025-06-03 11:31:45,483 | INFO     | chi2: 0.01731919704710783
[2025-06-03 13:31:59] 2025-06-03 11:31:45,483 | INFO     | -- intersect: 6398920129.468293
[2025-06-03 13:31:59] 2025-06-03 11:31:45,484 | INFO     | current memory leak: -3.66 B/s (using 82 data points, chi2=0.02)
[2025-06-03 13:31:59] 2025-06-03 11:31:45,484 | INFO     | ..............................
[2025-06-03 13:31:59] 2025-06-03 11:31:45,484 | INFO     | . Timing measurements:
[2025-06-03 13:31:59] 2025-06-03 11:31:45,484 | INFO     | . get job = 0 s
[2025-06-03 13:31:59] 2025-06-03 11:31:45,484 | INFO     | . initial setup = 1 s
[2025-06-03 13:31:59] 2025-06-03 11:31:45,484 | INFO     | . payload setup = 8 s
[2025-06-03 13:31:59] 2025-06-03 11:31:45,484 | INFO     | . stage-in = 0 s
[2025-06-03 13:31:59] 2025-06-03 11:31:45,484 | INFO     | . payload execution = 6544 s
[2025-06-03 13:31:59] 2025-06-03 11:31:45,484 | INFO     | . stage-out = 0 s
[2025-06-03 13:31:59] 2025-06-03 11:31:45,484 | INFO     | . log creation = 0 s
[2025-06-03 13:31:59] 2025-06-03 11:31:45,484 | INFO     | ..............................
[2025-06-03 13:31:59] 2025-06-03 11:31:45,527 | INFO     | 
[2025-06-03 13:31:59] 2025-06-03 11:31:45,527 | INFO     | job summary report
[2025-06-03 13:31:59] 2025-06-03 11:31:45,527 | INFO     | --------------------------------------------------
[2025-06-03 13:31:59] 2025-06-03 11:31:45,527 | INFO     | PanDA job id: 6677394117
[2025-06-03 13:31:59] 2025-06-03 11:31:45,527 | INFO     | task id: 45006595
[2025-06-03 13:31:59] 2025-06-03 11:31:45,527 | INFO     | errors: (none)
[2025-06-03 13:31:59] 2025-06-03 11:31:45,527 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 13:31:59] 2025-06-03 11:31:45,527 | INFO     | pilot state: finished 
[2025-06-03 13:31:59] 2025-06-03 11:31:45,527 | INFO     | transexitcode: 0
[2025-06-03 13:31:59] 2025-06-03 11:31:45,527 | INFO     | exeerrorcode: 0
[2025-06-03 13:31:59] 2025-06-03 11:31:45,527 | INFO     | exeerrordiag: 
[2025-06-03 13:31:59] 2025-06-03 11:31:45,527 | INFO     | exitcode: 0
[2025-06-03 13:31:59] 2025-06-03 11:31:45,527 | INFO     | exitmsg: OK
[2025-06-03 13:31:59] 2025-06-03 11:31:45,527 | INFO     | cpuconsumptiontime: 12748 s
[2025-06-03 13:31:59] 2025-06-03 11:31:45,527 | INFO     | nevents: 400
[2025-06-03 13:31:59] 2025-06-03 11:31:45,527 | INFO     | neventsw: 0
[2025-06-03 13:31:59] 2025-06-03 11:31:45,527 | INFO     | pid: 1006892
[2025-06-03 13:31:59] 2025-06-03 11:31:45,527 | INFO     | pgrp: 1006892
[2025-06-03 13:31:59] 2025-06-03 11:31:45,527 | INFO     | corecount: 2
[2025-06-03 13:31:59] 2025-06-03 11:31:45,527 | INFO     | event service: False
[2025-06-03 13:31:59] 2025-06-03 11:31:45,527 | INFO     | sizes: {0: 2405180, 8: 2405386, 11: 2405414, 6557: 2432448, 6558: 2441451, 6569: 2441565}
[2025-06-03 13:31:59] 2025-06-03 11:31:45,527 | INFO     | --------------------------------------------------
[2025-06-03 13:31:59] 2025-06-03 11:31:45,527 | INFO     | 
[2025-06-03 13:31:59] 2025-06-03 11:31:45,527 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-06-03 13:31:59] 2025-06-03 11:31:45,539 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 13:31:59] 2025-06-03 11:31:45,539 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 13:31:59] 2025-06-03 11:31:45,539 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 13:31:59] 2025-06-03 11:31:45,539 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 13:31:59] 2025-06-03 11:31:45,539 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 13:31:59] 2025-06-03 11:31:45,539 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 13:31:59] 2025-06-03 11:31:45,539 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 13:31:59] 2025-06-03 11:31:45,539 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 13:31:59] 2025-06-03 11:31:45,539 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 13:31:59] 2025-06-03 11:31:45,539 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 13:31:59] 2025-06-03 11:31:45,539 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 13:31:59] 2025-06-03 11:31:45,539 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 13:31:59] 2025-06-03 11:31:45,539 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 13:31:59] 2025-06-03 11:31:45,539 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 13:31:59] 2025-06-03 11:31:45,539 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 13:31:59] 2025-06-03 11:31:45,539 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 13:31:59] 2025-06-03 11:31:45,539 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 13:31:59] 2025-06-03 11:31:45,539 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 13:31:59] 2025-06-03 11:31:45,539 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 13:31:59] 2025-06-03 11:31:45,539 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 13:31:59] 2025-06-03 11:31:45,539 | INFO     | job 6677394117 has completed (purged errors)
[2025-06-03 13:31:59] 2025-06-03 11:31:45,540 | INFO     | overall cleanup function is called
[2025-06-03 13:31:59] 2025-06-03 11:31:46,545 | INFO     | --- collectZombieJob: --- 10, [1006892]
[2025-06-03 13:31:59] 2025-06-03 11:31:46,546 | INFO     | zombie collector waiting for pid 1006892
[2025-06-03 13:31:59] 2025-06-03 11:31:46,546 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 13:31:59] 2025-06-03 11:31:46,546 | INFO     | collected zombie processes
[2025-06-03 13:31:59] 2025-06-03 11:31:46,546 | INFO     | will attempt to kill all subprocesses of pid=1006892
[2025-06-03 13:31:59] 2025-06-03 11:31:46,580 | INFO     | process IDs to be killed: [1006892] (in reverse order)
[2025-06-03 13:31:59] 2025-06-03 11:31:46,602 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 13:31:59] 2025-06-03 11:31:46,602 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 13:31:59] 2025-06-03 11:31:46,603 | INFO     | did not find any defunct processes belonging to 1006892
[2025-06-03 13:31:59] 2025-06-03 11:31:46,603 | INFO     | did not find any defunct processes belonging to 1006892
[2025-06-03 13:31:59] 2025-06-03 11:31:46,603 | INFO     | ready for new job
[2025-06-03 13:31:59] 2025-06-03 11:31:46,603 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 13:31:59] 2025-06-03 11:31:46,604 | INFO     | **************************************
[2025-06-03 13:31:59] 2025-06-03 11:31:46,604 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 13:31:59] 2025-06-03 11:31:46,604 | INFO     | **************************************
[2025-06-03 13:31:59] 2025-06-03 11:31:46,604 | INFO     | 
[2025-06-03 13:31:59] 2025-06-03 11:31:46,604 | INFO     | architecture information:
[2025-06-03 13:31:59] 2025-06-03 11:31:46,604 | INFO     | executing command: cat /etc/os-release
[2025-06-03 13:31:59] 2025-06-03 11:31:46,613 | INFO     | cat /etc/os-release:
[2025-06-03 13:31:59] NAME="CentOS Linux"
[2025-06-03 13:31:59] VERSION="7 (Core)"
[2025-06-03 13:31:59] ID="centos"
[2025-06-03 13:31:59] ID_LIKE="rhel fedora"
[2025-06-03 13:31:59] VERSION_ID="7"
[2025-06-03 13:31:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 13:31:59] ANSI_COLOR="0;31"
[2025-06-03 13:31:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 13:31:59] HOME_URL="https://www.centos.org/"
[2025-06-03 13:31:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 13:31:59] 
[2025-06-03 13:31:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 13:31:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 13:31:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 13:31:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 13:31:59] 
[2025-06-03 13:31:59] 2025-06-03 11:31:46,613 | INFO     | **************************************
[2025-06-03 13:31:59] 2025-06-03 11:31:47,116 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-03 13:31:59] 2025-06-03 11:31:47,128 | INFO     | sufficient remaining disk space (492458475520 B)
[2025-06-03 13:31:59] 2025-06-03 11:31:47,128 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 13:31:59] 2025-06-03 11:31:47,129 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 13:31:59] 2025-06-03 11:31:47,129 | INFO     | update_server=False
[2025-06-03 13:31:59] 2025-06-03 11:31:47,129 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 13:31:59] 2025-06-03 11:31:47,129 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 13:31:59] 2025-06-03 11:31:47,129 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 13:31:59] 2025-06-03 11:31:47,129 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:31:59] 2025-06-03 11:31:47,129 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:31:59] 2025-06-03 11:31:47,129 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 13:31:59] 2025-06-03 11:31:47,129 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 13:31:59] 2025-06-03 11:31:47,129 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 13:31:59] 2025-06-03 11:31:47,129 | INFO     | aborting loop
[2025-06-03 13:31:59] 2025-06-03 11:31:47,761 | INFO     | all payload control threads have been joined
[2025-06-03 13:31:59] 2025-06-03 11:31:48,134 | INFO     | [job] retrieve thread has finished
[2025-06-03 13:31:59] 2025-06-03 11:31:48,134 | INFO     | [job] queue monitor thread has finished
[2025-06-03 13:31:59] 2025-06-03 11:31:48,135 | INFO     | [job] job monitor thread has finished
[2025-06-03 13:31:59] 2025-06-03 11:31:48,213 | INFO     | all data control threads have been joined
[2025-06-03 13:31:59] 2025-06-03 11:31:48,296 | INFO     | [payload] validate_post thread has finished
[2025-06-03 13:31:59] 2025-06-03 11:31:48,732 | INFO     | all job control threads have been joined
[2025-06-03 13:31:59] 2025-06-03 11:31:48,767 | INFO     | [payload] control thread has finished
[2025-06-03 13:31:59] 2025-06-03 11:31:48,862 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 13:31:59] 2025-06-03 11:31:48,864 | INFO     | [payload] failed_post thread has finished
[2025-06-03 13:31:59] 2025-06-03 11:31:49,135 | INFO     | [data] copytool_out thread has finished
[2025-06-03 13:31:59] 2025-06-03 11:31:49,201 | INFO     | [data] copytool_in thread has finished
[2025-06-03 13:31:59] 2025-06-03 11:31:49,218 | INFO     | [data] control thread has finished
[2025-06-03 13:31:59] 2025-06-03 11:31:49,231 | INFO     | [job] validate thread has finished
[2025-06-03 13:31:59] 2025-06-03 11:31:49,268 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 13:31:59] 2025-06-03 11:31:49,304 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 13:31:59] 2025-06-03 11:31:49,356 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 13:31:59] 2025-06-03 11:31:49,568 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 13:31:59] 2025-06-03 11:31:49,738 | INFO     | [job] control thread has finished
[2025-06-03 13:31:59] 2025-06-03 11:31:53,312 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 13:31:59] 2025-06-03 11:31:54,662 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140102931367744)>', '<ExcThread(monitor, started 140102277777152)>']
[2025-06-03 13:31:59] 2025-06-03 11:31:55,167 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 13:31:59] 2025-06-03 11:31:55,167 | INFO     | [monitor] control thread has ended
[2025-06-03 13:31:59] 2025-06-03 11:31:59,687 | INFO     | all workflow threads have been joined
[2025-06-03 13:31:59] 2025-06-03 11:31:59,687 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 13:31:59] 2025-06-03 11:31:59,688 | INFO     | traces error code: 0
[2025-06-03 13:31:59] 2025-06-03 11:31:59,688 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 13:31:59] 2025-06-03 11:31:59,729 [wrapper] ==== pilot stdout END ====
[2025-06-03 13:31:59] 2025-06-03 11:31:59,732 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 13:31:59] 2025-06-03 11:31:59,734 [wrapper] pilotpid: 1000430
[2025-06-03 13:31:59] 2025-06-03 11:31:59,737 [wrapper] Pilot exit status: 0
[2025-06-03 13:31:59] 2025-06-03 11:31:59,744 [wrapper] pandaids: 6677394117
[2025-06-03 13:31:59] 2025-06-03 11:31:59,757 [wrapper] cleanup supervisor_pilot 1021173 1000431
[2025-06-03 13:31:59] 2025-06-03 11:31:59,759 [wrapper] Test setup, not cleaning
[2025-06-03 13:31:59] 2025-06-03 11:31:59,762 [wrapper] apfmon messages muted
[2025-06-03 13:31:59] 2025-06-03 11:31:59,764 [wrapper] ==== wrapper stdout END ====
[2025-06-03 13:31:59] 2025-06-03 11:31:59,766 [wrapper] ==== wrapper stderr END ====
[2025-06-03 13:31:59]  *** Error codes and diagnostics ***
[2025-06-03 13:31:59]     "exeErrorCode": 0,
[2025-06-03 13:31:59]     "exeErrorDiag": "",
[2025-06-03 13:31:59]     "pilotErrorCode": 0,
[2025-06-03 13:31:59]     "pilotErrorDiag": "",
[2025-06-03 13:31:59]  *** Listing of results directory ***
[2025-06-03 13:31:59] total 393340
[2025-06-03 13:31:59] -rw-r--r-- 1 boinc boinc      5111 Jun  2 21:18 queuedata.json
[2025-06-03 13:31:59] -rw-r--r-- 1 boinc boinc    495897 Jun  2 21:18 pilot3.tar.gz
[2025-06-03 13:31:59] -rwx------ 1 boinc boinc     37140 Jun  2 21:18 runpilot2-wrapper.sh
[2025-06-03 13:31:59] -rw-r--r-- 1 boinc boinc       100 Jun  3 11:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 13:31:59] -rwxr-xr-x 1 boinc boinc      7986 Jun  3 11:41 run_atlas
[2025-06-03 13:31:59] -rw-r--r-- 1 boinc boinc       105 Jun  3 11:41 job.xml
[2025-06-03 13:31:59] -rw-r--r-- 2 boinc boinc 214757897 Jun  3 11:41 EVNT.45006593._000362.pool.root.1
[2025-06-03 13:31:59] -rw-r--r-- 1 boinc boinc      6689 Jun  3 11:41 init_data.xml
[2025-06-03 13:31:59] drwxrwx--x 2 boinc boinc      4096 Jun  3 11:41 shared
[2025-06-03 13:31:59] -rw-r--r-- 2 boinc boinc    508876 Jun  3 11:41 input.tar.gz
[2025-06-03 13:31:59] -rw-r--r-- 2 boinc boinc     15093 Jun  3 11:41 start_atlas.sh
[2025-06-03 13:31:59] -rw-r--r-- 1 boinc boinc         0 Jun  3 11:41 boinc_lockfile
[2025-06-03 13:31:59] -rw-r--r-- 1 boinc boinc      2521 Jun  3 11:41 pandaJob.out
[2025-06-03 13:31:59] -rw------- 1 boinc boinc    985498 Jun  3 11:41 agis_schedconf.cvmfs.json
[2025-06-03 13:31:59] -rw------- 1 boinc boinc   1603667 Jun  3 11:41 agis_ddmendpoints.agis.ALL.json
[2025-06-03 13:31:59] drwx------ 4 boinc boinc      4096 Jun  3 11:41 pilot3
[2025-06-03 13:31:59] -rw------- 1 boinc boinc 182462264 Jun  3 13:31 HITS.45006595._009045.pool.root.1
[2025-06-03 13:31:59] -rw-r--r-- 1 boinc boinc       529 Jun  3 13:31 boinc_task_state.xml
[2025-06-03 13:31:59] -rw------- 1 boinc boinc        95 Jun  3 13:31 pilot_heartbeat.json
[2025-06-03 13:31:59] -rw------- 1 boinc boinc      1029 Jun  3 13:31 memory_monitor_summary.json
[2025-06-03 13:31:59] -rw------- 1 boinc boinc    236020 Jun  3 13:31 log.45006595._009045.job.log.tgz.1
[2025-06-03 13:31:59] -rw------- 1 boinc boinc      7647 Jun  3 13:31 heartbeat.json
[2025-06-03 13:31:59] -rw-r--r-- 1 boinc boinc      8192 Jun  3 13:31 boinc_mmap_file
[2025-06-03 13:31:59] -rw-r--r-- 1 boinc boinc        27 Jun  3 13:31 wrapper_checkpoint.txt
[2025-06-03 13:31:59] -rw------- 1 boinc boinc      4480 Jun  3 13:31 pilotlog.txt
[2025-06-03 13:31:59] -rw------- 1 boinc boinc    626204 Jun  3 13:31 log.45006595._009045.job.log.1
[2025-06-03 13:31:59] -rw------- 1 boinc boinc       357 Jun  3 13:31 output.list
[2025-06-03 13:31:59] -rw-r--r-- 1 boinc boinc       620 Jun  3 13:31 runtime_log
[2025-06-03 13:31:59] -rw------- 1 boinc boinc    880640 Jun  3 13:31 result.tar.gz
[2025-06-03 13:31:59] -rw-r--r-- 1 boinc boinc      8733 Jun  3 13:31 runtime_log.err
[2025-06-03 13:31:59] -rw------- 1 boinc boinc       659 Jun  3 13:31 eRsMDmArPg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmxGgKDmKgG1jn.diag
[2025-06-03 13:31:59] -rw-r--r-- 1 boinc boinc     21154 Jun  3 13:31 stderr.txt
[2025-06-03 13:31:59] HITS file was successfully produced:
[2025-06-03 13:31:59] -rw------- 1 boinc boinc 182462264 Jun  3 13:31 shared/HITS.pool.root.1
[2025-06-03 13:31:59]  *** Contents of shared directory: ***
[2025-06-03 13:31:59] total 389300
[2025-06-03 13:31:59] -rw-r--r-- 2 boinc boinc 214757897 Jun  3 11:41 ATLAS.root_0
[2025-06-03 13:31:59] -rw-r--r-- 2 boinc boinc    508876 Jun  3 11:41 input.tar.gz
[2025-06-03 13:31:59] -rw-r--r-- 2 boinc boinc     15093 Jun  3 11:41 start_atlas.sh
[2025-06-03 13:31:59] -rw------- 1 boinc boinc 182462264 Jun  3 13:31 HITS.pool.root.1
[2025-06-03 13:31:59] -rw------- 1 boinc boinc    880640 Jun  3 13:31 result.tar.gz
13:32:01 (996809): run_atlas exited; CPU time 12775.111241
13:32:01 (996809): called boinc_finish(0)

</stderr_txt>
]]>

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