Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:54:52 (1177016): wrapper (7.7.26015): starting
18:54:52 (1177016): wrapper: running run_atlas (--nthreads 12)
[2025-06-02 18:54:52] Arguments: --nthreads 12
[2025-06-02 18:54:52] Threads: 12
[2025-06-02 18:54:52] Checking for CVMFS
[2025-06-02 18:54:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-02 18:54:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-02 18:54:53] Running cvmfs_config stat atlas.cern.ch
[2025-06-02 18:54:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-02 18:54:54] 2.11.5.0 1479349 21151 235196 146725 2 612 33676544 45568001 20149 130560 0 195067928 99.795 128732069 21868 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-06-02 18:54:54] CVMFS is ok
[2025-06-02 18:54:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-02 18:54:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-02 18:54:54] Further information can be found at the LHC@home message board.
[2025-06-02 18:54:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 18:54:54] Checking for apptainer binary...
[2025-06-02 18:54:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-02 18:54:54] Running /usr/bin/apptainer --version
[2025-06-02 18:54:54] apptainer version 1.4.0-1.el9
[2025-06-02 18:54:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 18:54:55] wns0029.triumf.lcg
[2025-06-02 18:54:55] apptainer works
[2025-06-02 18:54:55] Set ATHENA_PROC_NUMBER=12
[2025-06-02 18:54:55] Set ATHENA_CORE_NUMBER=12
[2025-06-02 18:54:55] Starting ATLAS job with PandaID=6677419918
[2025-06-02 18:54:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-02 18:58:43]  *** The last 200 lines of the pilot log: ***
[2025-06-02 18:58:43] 2025-06-03 01:58:29,623 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-02 18:58:43] 2025-06-03 01:58:29,623 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-02 18:58:43] 2025-06-03 01:58:29,623 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-02 18:58:43] 2025-06-03 01:58:29,623 | WARNING  | found no stored workdir sizes
[2025-06-02 18:58:43] 2025-06-03 01:58:29,623 | INFO     | will not add max space = 0 B to job metrics
[2025-06-02 18:58:43] 2025-06-03 01:58:29,640 | WARNING  | wrong length of table data, x=[1748915758.0], y=[1884.0] (must be same and length>=4)
[2025-06-02 18:58:43] 2025-06-03 01:58:29,640 | INFO     | ..............................
[2025-06-02 18:58:43] 2025-06-03 01:58:29,640 | INFO     | . Timing measurements:
[2025-06-02 18:58:43] 2025-06-03 01:58:29,640 | INFO     | . get job = 0 s
[2025-06-02 18:58:43] 2025-06-03 01:58:29,640 | INFO     | . initial setup = 3 s
[2025-06-02 18:58:43] 2025-06-03 01:58:29,641 | INFO     | . payload setup = 9 s
[2025-06-02 18:58:43] 2025-06-03 01:58:29,641 | INFO     | . stage-in = 0 s
[2025-06-02 18:58:43] 2025-06-03 01:58:29,641 | INFO     | . payload execution = 29 s
[2025-06-02 18:58:43] 2025-06-03 01:58:29,641 | INFO     | . stage-out = 0 s
[2025-06-02 18:58:43] 2025-06-03 01:58:29,641 | INFO     | . log creation = 0 s
[2025-06-02 18:58:43] 2025-06-03 01:58:29,641 | INFO     | ..............................
[2025-06-02 18:58:43] 2025-06-03 01:58:29,641 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-02 18:58:43] 2025-06-03 01:58:29,641 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6677419918/pilotlog.txt
[2025-06-02 18:58:43] 2025-06-03 01:58:29,666 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-06-02 18:58:43] - Log from pilotlog.txt -
[2025-06-02 18:58:43] 2025-06-03 01:58:29,623 | INFO     | extracted standard info from prmon json
[2025-06-02 18:58:43] 2025-06-03 01:58:29,623 | INFO     | extracted standard memory fields from prmon json
[2025-06-02 18:58:43] 2025-06-03 01:58:29,623 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-02 18:58:43] 2025-06-03 01:58:29,623 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-02 18:58:43] 2025-06-03 01:58:29,623 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-02 18:58:43] 2025-06-03 01:58:29,623 | WARNING  | found no stored workdir sizes
[2025-06-02 18:58:43] 2025-06-03 01:58:29,623 | INFO     | will not add max space = 0 B to job metrics
[2025-06-02 18:58:43] 2025-06-03 01:58:29,640 | WARNING  | wrong length of table data, x=[1748915758.0], y=[1884.0] (must be same and length>=4)
[2025-06-02 18:58:43] 2025-06-03 01:58:29,640 | INFO     | ..............................
[2025-06-02 18:58:43] 2025-06-03 01:58:29,640 | INFO     | . Timing measurements:
[2025-06-02 18:58:43] 2025-06-03 01:58:29,640 | INFO     | . get job = 0 s
[2025-06-02 18:58:43] 2025-06-03 01:58:29,640 | INFO     | . initial setup = 3 s
[2025-06-02 18:58:43] 2025-06-03 01:58:29,641 | INFO     | . payload setup = 9 s
[2025-06-02 18:58:43] 2025-06-03 01:58:29,641 | INFO     | . stage-in = 0 s
[2025-06-02 18:58:43] 2025-06-03 01:58:29,641 | INFO     | . payload execution = 29 s
[2025-06-02 18:58:43] 2025-06-03 01:58:29,641 | INFO     | . stage-out = 0 s
[2025-06-02 18:58:43] 2025-06-03 01:58:29,641 | INFO     | . log creation = 0 s
[2025-06-02 18:58:43] 2025-06-03 01:58:29,641 | INFO     | ..............................
[2025-06-02 18:58:43] 2025-06-03 01:58:29,641 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-02 18:58:43] 2025-06-03 01:58:29,641 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6677419918/pilotlog.txt
[2025-06-02 18:58:43] 2025-06-03 01:58:29,666 | WARNING  | 
[2025-06-02 18:58:43] [begin log extracts]
[2025-06-02 18:58:43] - Log from pilotlog.txt -
[2025-06-02 18:58:43] 2025-06-03 01:58:29,623 | INFO     | extracted standard info from prmon json
[2025-06-02 18:58:43] 2025-06-03 01:58:29,623 | INFO     | extracted standard memory fields from prmon json
[2025-06-02 18:58:43] 2025-06-03 01:58:29,623 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-02 18:58:43] 2025-06-03 01:58:29,623 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-02 18:58:43] 2025-06-03 01:58:29,623 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-02 18:58:43] 2025-06-03 01:58:29,623 | WARNING  | found no stored workdir sizes
[2025-06-02 18:58:43] 2025-06-03 01:58:29,623 | INFO     | will not add max space = 0 B to job metrics
[2025-06-02 18:58:43] 2025-06-03 01:58:29,640 | WARNING  | wrong length of table data, x=[1748915758.0], y=[1884.0] (must be same and length>=4)
[2025-06-02 18:58:43] 2025-06-03 01:58:29,640 | INFO     | ..............................
[2025-06-02 18:58:43] 2025-06-03 01:58:29,640 | INFO     | . Timing measurements:
[2025-06-02 18:58:43] 2025-06-03 01:58:29,640 | INFO     | . get job = 0 s
[2025-06-02 18:58:43] 2025-06-03 01:58:29,640 | INFO     | . initial setup = 3 s
[2025-06-02 18:58:43] 2025-06-03 01:58:29,641 | INFO     | . payload setup = 9 s
[2025-06-02 18:58:43] 2025-06-03 01:58:29,641 | INFO     | . stage-in = 0 s
[2025-06-02 18:58:43] 2025-06-03 01:58:29,641 | INFO     | . payload execution = 29 s
[2025-06-02 18:58:43] 2025-06-03 01:58:29,641 | INFO     | . stage-out = 0 s
[2025-06-02 18:58:43] 2025-06-03 01:58:29,641 | INFO     | . log creation = 0 s
[2025-06-02 18:58:43] 2025-06-03 01:58:29,641 | INFO     | ..............................
[2025-06-02 18:58:43] 2025-06-03 01:58:29,641 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-02 18:58:43] 2025-06-03 01:58:29,641 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6677419918/pilotlog.txt
[2025-06-02 18:58:43] [end log extracts]
[2025-06-02 18:58:43] 2025-06-03 01:58:29,666 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-06-02 18:58:43] 2025-06-03 01:58:29,667 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-06-02 18:58:43] 2025-06-03 01:58:30,107 | INFO     | 
[2025-06-02 18:58:43] 2025-06-03 01:58:30,108 | INFO     | job summary report
[2025-06-02 18:58:43] 2025-06-03 01:58:30,108 | INFO     | --------------------------------------------------
[2025-06-02 18:58:43] 2025-06-03 01:58:30,108 | INFO     | PanDA job id: 6677419918
[2025-06-02 18:58:43] 2025-06-03 01:58:30,108 | INFO     | task id: 45006595
[2025-06-02 18:58:43] 2025-06-03 01:58:30,108 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-06-02 18:56:12,488 CRITICAL Transform executor raised TransformValidationExceptio
[2025-06-02 18:58:43] 2025-06-03 01:58:30,108 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-02 18:58:43] 2025-06-03 01:58:30,108 | INFO     | pilot state: failed 
[2025-06-02 18:58:43] 2025-06-03 01:58:30,108 | INFO     | transexitcode: 65
[2025-06-02 18:58:43] 2025-06-03 01:58:30,108 | INFO     | exeerrorcode: 65
[2025-06-02 18:58:43] 2025-06-03 01:58:30,108 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-06-02 18:58:43] 2025-06-03 01:58:30,108 | INFO     | exitcode: 65
[2025-06-02 18:58:43] 2025-06-03 01:58:30,108 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-06-02 18:58:43] 2025-06-03 01:58:30,108 | INFO     | cpuconsumptiontime: 16 s
[2025-06-02 18:58:43] 2025-06-03 01:58:30,108 | INFO     | nevents: 0
[2025-06-02 18:58:43] 2025-06-03 01:58:30,108 | INFO     | neventsw: 0
[2025-06-02 18:58:43] 2025-06-03 01:58:30,108 | INFO     | pid: 1191643
[2025-06-02 18:58:43] 2025-06-03 01:58:30,108 | INFO     | pgrp: 1191643
[2025-06-02 18:58:43] 2025-06-03 01:58:30,109 | INFO     | corecount: 12
[2025-06-02 18:58:43] 2025-06-03 01:58:30,109 | INFO     | event service: False
[2025-06-02 18:58:43] 2025-06-03 01:58:30,109 | INFO     | sizes: {0: 2405008, 1: 2405207, 9: 2405413, 11: 2405441, 43: 2432796, 45: 2432796, 171: 2433066}
[2025-06-02 18:58:43] 2025-06-03 01:58:30,109 | INFO     | --------------------------------------------------
[2025-06-02 18:58:43] 2025-06-03 01:58:30,109 | INFO     | 
[2025-06-02 18:58:43] 2025-06-03 01:58:30,109 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-06-02 18:58:43] 2025-06-03 01:58:30,173 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-02 18:58:43] 2025-06-03 01:58:30,173 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-02 18:58:43] 2025-06-03 01:58:30,173 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-02 18:58:43] 2025-06-03 01:58:30,173 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-02 18:58:43] 2025-06-03 01:58:30,173 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-02 18:58:43] 2025-06-03 01:58:30,173 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-02 18:58:43] 2025-06-03 01:58:30,173 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-02 18:58:43] 2025-06-03 01:58:30,173 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-02 18:58:43] 2025-06-03 01:58:30,173 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-02 18:58:43] 2025-06-03 01:58:30,173 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-02 18:58:43] 2025-06-03 01:58:30,173 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-02 18:58:43] 2025-06-03 01:58:30,174 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-02 18:58:43] 2025-06-03 01:58:30,174 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-02 18:58:43] 2025-06-03 01:58:30,174 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-02 18:58:43] 2025-06-03 01:58:30,174 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-02 18:58:43] 2025-06-03 01:58:30,174 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-02 18:58:43] 2025-06-03 01:58:30,174 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-02 18:58:43] 2025-06-03 01:58:30,174 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-02 18:58:43] 2025-06-03 01:58:30,174 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-02 18:58:43] 2025-06-03 01:58:30,174 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-02 18:58:43] 2025-06-03 01:58:30,174 | INFO     | job 6677419918 has completed (purged errors)
[2025-06-02 18:58:43] 2025-06-03 01:58:30,174 | INFO     | overall cleanup function is called
[2025-06-02 18:58:43] 2025-06-03 01:58:31,182 | INFO     | --- collectZombieJob: --- 10, [1191643]
[2025-06-02 18:58:43] 2025-06-03 01:58:31,183 | INFO     | zombie collector waiting for pid 1191643
[2025-06-02 18:58:43] 2025-06-03 01:58:31,183 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-02 18:58:43] 2025-06-03 01:58:31,183 | INFO     | collected zombie processes
[2025-06-02 18:58:43] 2025-06-03 01:58:31,183 | INFO     | will attempt to kill all subprocesses of pid=1191643
[2025-06-02 18:58:43] 2025-06-03 01:58:31,599 | INFO     | process IDs to be killed: [1191643] (in reverse order)
[2025-06-02 18:58:43] 2025-06-03 01:58:31,725 | WARNING  | found no corresponding commands to process id(s)
[2025-06-02 18:58:43] 2025-06-03 01:58:31,726 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-02 18:58:43] 2025-06-03 01:58:31,735 | INFO     | did not find any defunct processes belonging to 1191643
[2025-06-02 18:58:43] 2025-06-03 01:58:31,744 | INFO     | did not find any defunct processes belonging to 1191643
[2025-06-02 18:58:43] 2025-06-03 01:58:31,744 | INFO     | ready for new job
[2025-06-02 18:58:43] 2025-06-03 01:58:31,744 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-02 18:58:43] 2025-06-03 01:58:31,746 | INFO     | **************************************
[2025-06-02 18:58:43] 2025-06-03 01:58:31,747 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-02 18:58:43] 2025-06-03 01:58:31,747 | INFO     | **************************************
[2025-06-02 18:58:43] 2025-06-03 01:58:31,747 | INFO     | 
[2025-06-02 18:58:43] 2025-06-03 01:58:31,749 | INFO     | architecture information:
[2025-06-02 18:58:43] 2025-06-03 01:58:31,749 | INFO     | executing command: cat /etc/os-release
[2025-06-02 18:58:43] 2025-06-03 01:58:31,761 | INFO     | cat /etc/os-release:
[2025-06-02 18:58:43] NAME="CentOS Linux"
[2025-06-02 18:58:43] VERSION="7 (Core)"
[2025-06-02 18:58:43] ID="centos"
[2025-06-02 18:58:43] ID_LIKE="rhel fedora"
[2025-06-02 18:58:43] VERSION_ID="7"
[2025-06-02 18:58:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-02 18:58:43] ANSI_COLOR="0;31"
[2025-06-02 18:58:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-02 18:58:43] HOME_URL="https://www.centos.org/"
[2025-06-02 18:58:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-02 18:58:43] 
[2025-06-02 18:58:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-02 18:58:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-02 18:58:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-02 18:58:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-02 18:58:43] 
[2025-06-02 18:58:43] 2025-06-03 01:58:31,762 | INFO     | **************************************
[2025-06-02 18:58:43] 2025-06-03 01:58:32,265 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-06-02 18:58:43] 2025-06-03 01:58:32,316 | INFO     | sufficient remaining disk space (2019511238656 B)
[2025-06-02 18:58:43] 2025-06-03 01:58:32,316 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-02 18:58:43] 2025-06-03 01:58:32,316 | INFO     | current server update state: UPDATING_FINAL
[2025-06-02 18:58:43] 2025-06-03 01:58:32,317 | INFO     | update_server=False
[2025-06-02 18:58:43] 2025-06-03 01:58:32,317 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-02 18:58:43] 2025-06-03 01:58:32,342 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-02 18:58:43] 2025-06-03 01:58:32,763 | INFO     | all payload control threads have been joined
[2025-06-02 18:58:43] 2025-06-03 01:58:32,846 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-02 18:58:43] 2025-06-03 01:58:32,847 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-02 18:58:43] 2025-06-03 01:58:32,847 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-02 18:58:43] 2025-06-03 01:58:32,847 | INFO     | will abort loop
[2025-06-02 18:58:43] 2025-06-03 01:58:33,049 | INFO     | all data control threads have been joined
[2025-06-02 18:58:43] 2025-06-03 01:58:33,107 | INFO     | found 0 job(s) in 20 queues
[2025-06-02 18:58:43] 2025-06-03 01:58:33,107 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-02 18:58:43] 2025-06-03 01:58:33,107 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-02 18:58:43] 2025-06-03 01:58:33,150 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-02 18:58:43] 2025-06-03 01:58:33,161 | INFO     | all job control threads have been joined
[2025-06-02 18:58:43] 2025-06-03 01:58:33,346 | INFO     | [job] retrieve thread has finished
[2025-06-02 18:58:43] 2025-06-03 01:58:33,648 | INFO     | [payload] execute_payloads thread has finished
[2025-06-02 18:58:43] 2025-06-03 01:58:33,656 | INFO     | [job] validate thread has finished
[2025-06-02 18:58:43] 2025-06-03 01:58:33,763 | INFO     | [job] create_data_payload thread has finished
[2025-06-02 18:58:43] 2025-06-03 01:58:33,769 | INFO     | [payload] control thread has finished
[2025-06-02 18:58:43] 2025-06-03 01:58:33,852 | INFO     | [job] job monitor thread has finished
[2025-06-02 18:58:43] 2025-06-03 01:58:33,988 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-02 18:58:43] 2025-06-03 01:58:33,992 | INFO     | [payload] validate_pre thread has finished
[2025-06-02 18:58:43] 2025-06-03 01:58:34,055 | INFO     | [data] control thread has finished
[2025-06-02 18:58:43] 2025-06-03 01:58:34,168 | INFO     | [job] control thread has finished
[2025-06-02 18:58:43] 2025-06-03 01:58:34,497 | INFO     | [payload] failed_post thread has finished
[2025-06-02 18:58:43] 2025-06-03 01:58:34,733 | INFO     | [data] copytool_in thread has finished
[2025-06-02 18:58:43] 2025-06-03 01:58:34,845 | INFO     | [payload] validate_post thread has finished
[2025-06-02 18:58:43] 2025-06-03 01:58:35,127 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-02 18:58:43] 2025-06-03 01:58:35,158 | INFO     | [data] copytool_out thread has finished
[2025-06-02 18:58:43] 2025-06-03 01:58:36,133 | INFO     | [job] queue monitor thread has finished
[2025-06-02 18:58:43] 2025-06-03 01:58:36,351 | INFO     | [data] queue_monitor thread has finished
[2025-06-02 18:58:43] 2025-06-03 01:58:37,098 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140027034879808)>', '<ExcThread(monitor, started 140026100823808)>']
[2025-06-02 18:58:43] 2025-06-03 01:58:37,128 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-02 18:58:43] 2025-06-03 01:58:37,129 | INFO     | [monitor] control thread has ended
[2025-06-02 18:58:43] 2025-06-03 01:58:42,124 | INFO     | all workflow threads have been joined
[2025-06-02 18:58:43] 2025-06-03 01:58:42,125 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-02 18:58:43] 2025-06-03 01:58:42,125 | INFO     | traces error code: 0
[2025-06-02 18:58:43] 2025-06-03 01:58:42,125 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-02 18:58:43] 2025-06-03 01:58:42,944 [wrapper] ==== pilot stdout END ====
[2025-06-02 18:58:43] 2025-06-03 01:58:42,946 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-02 18:58:43] 2025-06-03 01:58:42,948 [wrapper] pilotpid: 1182743
[2025-06-02 18:58:43] 2025-06-03 01:58:42,950 [wrapper] Pilot exit status: 0
[2025-06-02 18:58:43] 2025-06-03 01:58:42,989 [wrapper] pandaids: 6677419918
[2025-06-02 18:58:43] 2025-06-03 01:58:43,041 [wrapper] cleanup supervisor_pilot 1182749 1182744
[2025-06-02 18:58:43] 2025-06-03 01:58:43,044 [wrapper] Test setup, not cleaning
[2025-06-02 18:58:43] 2025-06-03 01:58:43,046 [wrapper] apfmon messages muted
[2025-06-02 18:58:43] 2025-06-03 01:58:43,095 [wrapper] ==== wrapper stdout END ====
[2025-06-02 18:58:43] 2025-06-03 01:58:43,112 [wrapper] ==== wrapper stderr END ====
[2025-06-02 18:58:43]  *** Error codes and diagnostics ***
[2025-06-02 18:58:43]     "exeErrorCode": 65,
[2025-06-02 18:58:43]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-06-02 18:58:43]     "pilotErrorCode": 1305,
[2025-06-02 18:58:43]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-06-02 18:58:43]  *** Listing of results directory ***
[2025-06-02 18:58:43] total 215020
[2025-06-02 18:58:43] -rw-r--r--. 1 boinc boinc    495897 Jun  2 16:21 pilot3.tar.gz
[2025-06-02 18:58:43] -rw-r--r--. 1 boinc boinc      5111 Jun  2 16:40 queuedata.json
[2025-06-02 18:58:43] -rwx------. 1 boinc boinc     37140 Jun  2 16:41 runpilot2-wrapper.sh
[2025-06-02 18:58:43] -rw-r--r--. 1 boinc boinc       100 Jun  2 18:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-02 18:58:43] -rwxr-xr-x. 1 boinc boinc      7986 Jun  2 18:54 run_atlas
[2025-06-02 18:58:43] -rw-r--r--. 1 boinc boinc       105 Jun  2 18:54 job.xml
[2025-06-02 18:58:43] -rw-r--r--. 1 boinc boinc      6601 Jun  2 18:54 init_data.xml
[2025-06-02 18:58:43] -rw-r--r--. 2 boinc boinc 216151034 Jun  2 18:54 EVNT.45006593._000582.pool.root.1
[2025-06-02 18:58:43] -rw-r--r--. 2 boinc boinc     15093 Jun  2 18:54 start_atlas.sh
[2025-06-02 18:58:43] drwxrwx--x. 2 boinc boinc      4096 Jun  2 18:54 shared
[2025-06-02 18:58:43] -rw-r--r--. 2 boinc boinc    508883 Jun  2 18:54 input.tar.gz
[2025-06-02 18:58:43] -rw-r--r--. 1 boinc boinc         0 Jun  2 18:54 boinc_lockfile
[2025-06-02 18:58:43] -rw-r--r--. 1 boinc boinc      2524 Jun  2 18:54 pandaJob.out
[2025-06-02 18:58:43] -rw-------. 1 boinc boinc    988073 Jun  2 18:55 agis_schedconf.cvmfs.json
[2025-06-02 18:58:43] -rw-------. 1 boinc boinc   1603667 Jun  2 18:55 agis_ddmendpoints.agis.ALL.json
[2025-06-02 18:58:43] drwx------. 4 boinc boinc      4096 Jun  2 18:55 pilot3
[2025-06-02 18:58:43] -rw-------. 1 boinc boinc       971 Jun  2 18:56 memory_monitor_summary.json
[2025-06-02 18:58:43] -rw-------. 1 boinc boinc     19985 Jun  2 18:56 log.45006595._014543.job.log.tgz.1
[2025-06-02 18:58:43] -rw-------. 1 boinc boinc        95 Jun  2 18:58 pilot_heartbeat.json
[2025-06-02 18:58:43] -rw-------. 1 boinc boinc      8312 Jun  2 18:58 heartbeat.json
[2025-06-02 18:58:43] -rw-r--r--. 1 boinc boinc       524 Jun  2 18:58 boinc_task_state.xml
[2025-06-02 18:58:43] -rw-r--r--. 1 boinc boinc      8192 Jun  2 18:58 boinc_mmap_file
[2025-06-02 18:58:43] -rw-------. 1 boinc boinc      4538 Jun  2 18:58 pilotlog.txt
[2025-06-02 18:58:43] -rw-r--r--. 1 boinc boinc        22 Jun  2 18:58 wrapper_checkpoint.txt
[2025-06-02 18:58:43] -rw-------. 1 boinc boinc     74411 Jun  2 18:58 log.45006595._014543.job.log.1
[2025-06-02 18:58:43] -rw-------. 1 boinc boinc       188 Jun  2 18:58 output.list
[2025-06-02 18:58:43] -rw-r--r--. 1 boinc boinc       620 Jun  2 18:58 runtime_log
[2025-06-02 18:58:43] -rw-------. 1 boinc boinc    112640 Jun  2 18:58 result.tar.gz
[2025-06-02 18:58:43] -rw-r--r--. 1 boinc boinc      8484 Jun  2 18:58 runtime_log.err
[2025-06-02 18:58:43] -rw-------. 1 boinc boinc       644 Jun  2 18:58 nk6MDmwxTg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmEsWKDmFq9RYn.diag
[2025-06-02 18:58:43] -rw-r--r--. 1 boinc boinc     21461 Jun  2 18:58 stderr.txt
[2025-06-02 18:58:43] No HITS result produced
[2025-06-02 18:58:43]  *** Contents of shared directory: ***
[2025-06-02 18:58:43] total 211720
[2025-06-02 18:58:43] -rw-r--r--. 2 boinc boinc 216151034 Jun  2 18:54 ATLAS.root_0
[2025-06-02 18:58:43] -rw-r--r--. 2 boinc boinc     15093 Jun  2 18:54 start_atlas.sh
[2025-06-02 18:58:43] -rw-r--r--. 2 boinc boinc    508883 Jun  2 18:54 input.tar.gz
[2025-06-02 18:58:43] -rw-------. 1 boinc boinc    112640 Jun  2 18:58 result.tar.gz
18:58:44 (1177016): run_atlas exited; CPU time 22.426339
18:58:44 (1177016): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN