Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:34:54 (3487022): wrapper (7.7.26015): starting
21:34:54 (3487022): wrapper: running run_atlas (--nthreads 8)
[2025-06-02 21:34:54] Arguments: --nthreads 8
[2025-06-02 21:34:54] Threads: 8
[2025-06-02 21:34:54] Checking for CVMFS
[2025-06-02 21:34:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-02 21:34:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-02 21:34:54] Running cvmfs_config stat atlas.cern.ch
[2025-06-02 21:34:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-02 21:34:55] 2.12.6.0 274037 169829 1026108 146725 0 174 33258191 40960000 25027 130560 2 728918869 99.749 480789689 19086 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-02 21:34:55] CVMFS is ok
[2025-06-02 21:34:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-02 21:34:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-02 21:34:55] Further information can be found at the LHC@home message board.
[2025-06-02 21:34:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 21:34:55] Checking for apptainer binary...
[2025-06-02 21:34:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-02 21:34:55] Running /usr/bin/apptainer --version
[2025-06-02 21:34:55] apptainer version 1.4.1-1.el9
[2025-06-02 21:34:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 21:34:55] lc-12-9.aglt2.org
[2025-06-02 21:34:55] apptainer works
[2025-06-02 21:34:55] Set ATHENA_PROC_NUMBER=8
[2025-06-02 21:34:55] Set ATHENA_CORE_NUMBER=8
[2025-06-02 21:34:55] Starting ATLAS job with PandaID=6677388252
[2025-06-02 21:34:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-02 23:11:18]  *** The last 200 lines of the pilot log: ***
[2025-06-02 23:11:18]  filetype=log
[2025-06-02 23:11:18]  guid=c8d84e73-c018-4b41-901d-6ed5ef2c5dea
[2025-06-02 23:11:18]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-02 23:11:18]  is_altstaged=None
[2025-06-02 23:11:18]  is_tar=False
[2025-06-02 23:11:18]  lfn=log.45006595._005880.job.log.tgz.1
[2025-06-02 23:11:18]  mtime=0
[2025-06-02 23:11:18]  protocol_id=None
[2025-06-02 23:11:18]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-02 23:11:18]  replicas=None
[2025-06-02 23:11:18]  scope=mc23_13p6TeV
[2025-06-02 23:11:18]  status=None
[2025-06-02 23:11:18]  status_code=0
[2025-06-02 23:11:18]  storage_token=
[2025-06-02 23:11:18]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6677388252/log.45006595._005880.job.log.tgz.1
[2025-06-02 23:11:18]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fb/67/log.45006595._005880.job.log.tgz.1
[2025-06-02 23:11:18]  workdir=None
[2025-06-02 23:11:18] ]
[2025-06-02 23:11:18] 2025-06-03 03:10:59,839 | INFO     | transferring file log.45006595._005880.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6677388252/log.45006595._005880.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-02 23:11:18] 2025-06-03 03:10:59,839 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6677388252/log.45006595._005880.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._005880.job
[2025-06-02 23:11:18] 2025-06-03 03:10:59,860 | INFO     | adding to output.list: log.45006595._005880.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fb/67/log.45006595._005880.job.log.tg
[2025-06-02 23:11:18] 2025-06-03 03:10:59,861 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-02 23:11:18] 2025-06-03 03:10:59,861 | INFO     | summary of transferred files:
[2025-06-02 23:11:18] 2025-06-03 03:10:59,861 | INFO     |  -- lfn=log.45006595._005880.job.log.tgz.1, status_code=0, status=transferred
[2025-06-02 23:11:18] 2025-06-03 03:10:59,862 | INFO     | stage-out finished correctly
[2025-06-02 23:11:18] 2025-06-03 03:11:01,264 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-02 23:11:18] 2025-06-03 03:11:01,322 | INFO     | job 6677388252 has state=finished
[2025-06-02 23:11:18] 2025-06-03 03:11:01,322 | INFO     | preparing for final server update for job 6677388252 in state='finished'
[2025-06-02 23:11:18] 2025-06-03 03:11:01,322 | INFO     | this job has now completed (state=finished)
[2025-06-02 23:11:18] 2025-06-03 03:11:01,323 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-02 23:11:18] 2025-06-03 03:11:01,323 | INFO     | log transfer has been attempted: DONE
[2025-06-02 23:11:18] 2025-06-03 03:11:01,323 | INFO     | job 6677388252 has finished - writing final server update
[2025-06-02 23:11:18] 2025-06-03 03:11:01,323 | INFO     | total number of processed events: 400 (read)
[2025-06-02 23:11:18] 2025-06-03 03:11:01,341 | INFO     | executing command: lscpu
[2025-06-02 23:11:18] 2025-06-03 03:11:01,429 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-02 23:11:18] 2025-06-03 03:11:01,913 | WARNING  | process 3506467 can no longer be monitored (due to stat problems) - aborting
[2025-06-02 23:11:18] 2025-06-03 03:11:01,914 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677388252/memory_monitor_summary.json (trf name=prmon)
[2025-06-02 23:11:18] 2025-06-03 03:11:02,375 | INFO     | number of running child processes to parent process 3506467: 1
[2025-06-02 23:11:18] 2025-06-03 03:11:02,375 | INFO     | maximum number of monitored processes: 6
[2025-06-02 23:11:18] 2025-06-03 03:11:04,878 | INFO     | monitor loop #400: job 0:6677388252 is in state 'finished'
[2025-06-02 23:11:18] 2025-06-03 03:11:04,878 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-02 23:11:18] 2025-06-03 03:11:05,350 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-02 23:11:18] 2025-06-03 03:11:05,350 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677388252/memory_monitor_summary.json (trf name=prmon)
[2025-06-02 23:11:18] 2025-06-03 03:11:05,350 | INFO     | extracted standard info from prmon json
[2025-06-02 23:11:18] 2025-06-03 03:11:05,351 | INFO     | extracted standard memory fields from prmon json
[2025-06-02 23:11:18] 2025-06-03 03:11:05,351 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-02 23:11:18] 2025-06-03 03:11:05,351 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-02 23:11:18] 2025-06-03 03:11:05,351 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-02 23:11:18] 2025-06-03 03:11:05,352 | INFO     | fitting pss+swap vs Time
[2025-06-02 23:11:18] 2025-06-03 03:11:05,352 | INFO     | sum of square deviations: 204163828.0
[2025-06-02 23:11:18] 2025-06-03 03:11:05,353 | INFO     | sum of deviations: -746627738.9999996
[2025-06-02 23:11:18] 2025-06-03 03:11:05,353 | INFO     | mean x: 1748917496.0
[2025-06-02 23:11:18] 2025-06-03 03:11:05,353 | INFO     | mean y: 2210179.528735632
[2025-06-02 23:11:18] 2025-06-03 03:11:05,353 | INFO     | -- intersect: 6398006773.5072775
[2025-06-02 23:11:18] 2025-06-03 03:11:05,353 | INFO     | intersect: 6398006773.5072775
[2025-06-02 23:11:18] 2025-06-03 03:11:05,353 | INFO     | chi2: 1.2726544261695116
[2025-06-02 23:11:18] 2025-06-03 03:11:05,353 | INFO     | -- intersect: 6398006773.5072775
[2025-06-02 23:11:18] 2025-06-03 03:11:05,353 | INFO     | current memory leak: -3.66 B/s (using 87 data points, chi2=1.27)
[2025-06-02 23:11:18] 2025-06-03 03:11:05,353 | INFO     | ..............................
[2025-06-02 23:11:18] 2025-06-03 03:11:05,354 | INFO     | . Timing measurements:
[2025-06-02 23:11:18] 2025-06-03 03:11:05,354 | INFO     | . get job = 0 s
[2025-06-02 23:11:18] 2025-06-03 03:11:05,354 | INFO     | . initial setup = 3 s
[2025-06-02 23:11:18] 2025-06-03 03:11:05,354 | INFO     | . payload setup = 15 s
[2025-06-02 23:11:18] 2025-06-03 03:11:05,354 | INFO     | . stage-in = 0 s
[2025-06-02 23:11:18] 2025-06-03 03:11:05,354 | INFO     | . payload execution = 5698 s
[2025-06-02 23:11:18] 2025-06-03 03:11:05,354 | INFO     | . stage-out = 0 s
[2025-06-02 23:11:18] 2025-06-03 03:11:05,354 | INFO     | . log creation = 0 s
[2025-06-02 23:11:18] 2025-06-03 03:11:05,354 | INFO     | ..............................
[2025-06-02 23:11:18] 2025-06-03 03:11:05,715 | INFO     | 
[2025-06-02 23:11:18] 2025-06-03 03:11:05,715 | INFO     | job summary report
[2025-06-02 23:11:18] 2025-06-03 03:11:05,716 | INFO     | --------------------------------------------------
[2025-06-02 23:11:18] 2025-06-03 03:11:05,716 | INFO     | PanDA job id: 6677388252
[2025-06-02 23:11:18] 2025-06-03 03:11:05,716 | INFO     | task id: 45006595
[2025-06-02 23:11:18] 2025-06-03 03:11:05,716 | INFO     | errors: (none)
[2025-06-02 23:11:18] 2025-06-03 03:11:05,716 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-02 23:11:18] 2025-06-03 03:11:05,716 | INFO     | pilot state: finished 
[2025-06-02 23:11:18] 2025-06-03 03:11:05,716 | INFO     | transexitcode: 0
[2025-06-02 23:11:18] 2025-06-03 03:11:05,716 | INFO     | exeerrorcode: 0
[2025-06-02 23:11:18] 2025-06-03 03:11:05,716 | INFO     | exeerrordiag: 
[2025-06-02 23:11:18] 2025-06-03 03:11:05,716 | INFO     | exitcode: 0
[2025-06-02 23:11:18] 2025-06-03 03:11:05,716 | INFO     | exitmsg: OK
[2025-06-02 23:11:18] 2025-06-03 03:11:05,716 | INFO     | cpuconsumptiontime: 35010 s
[2025-06-02 23:11:18] 2025-06-03 03:11:05,716 | INFO     | nevents: 400
[2025-06-02 23:11:18] 2025-06-03 03:11:05,717 | INFO     | neventsw: 0
[2025-06-02 23:11:18] 2025-06-03 03:11:05,717 | INFO     | pid: 3506467
[2025-06-02 23:11:18] 2025-06-03 03:11:05,717 | INFO     | pgrp: 3506467
[2025-06-02 23:11:18] 2025-06-03 03:11:05,717 | INFO     | corecount: 8
[2025-06-02 23:11:18] 2025-06-03 03:11:05,717 | INFO     | event service: False
[2025-06-02 23:11:18] 2025-06-03 03:11:05,717 | INFO     | sizes: {0: 2405175, 1: 2405175, 8: 2405409, 12: 2405437, 5718: 2431919, 5720: 2440860, 5721: 2441044, 5726: 2441214}
[2025-06-02 23:11:18] 2025-06-03 03:11:05,717 | INFO     | --------------------------------------------------
[2025-06-02 23:11:18] 2025-06-03 03:11:05,717 | INFO     | 
[2025-06-02 23:11:18] 2025-06-03 03:11:05,717 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-02 23:11:18] 2025-06-03 03:11:05,737 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-02 23:11:18] 2025-06-03 03:11:05,738 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-02 23:11:18] 2025-06-03 03:11:05,738 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-02 23:11:18] 2025-06-03 03:11:05,738 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-02 23:11:18] 2025-06-03 03:11:05,738 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-02 23:11:18] 2025-06-03 03:11:05,738 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-02 23:11:18] 2025-06-03 03:11:05,738 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-02 23:11:18] 2025-06-03 03:11:05,738 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-02 23:11:18] 2025-06-03 03:11:05,738 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-02 23:11:18] 2025-06-03 03:11:05,738 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-02 23:11:18] 2025-06-03 03:11:05,738 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-02 23:11:18] 2025-06-03 03:11:05,738 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-02 23:11:18] 2025-06-03 03:11:05,739 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-02 23:11:18] 2025-06-03 03:11:05,739 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-02 23:11:18] 2025-06-03 03:11:05,739 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-02 23:11:18] 2025-06-03 03:11:05,739 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-02 23:11:18] 2025-06-03 03:11:05,739 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-02 23:11:18] 2025-06-03 03:11:05,739 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-02 23:11:18] 2025-06-03 03:11:05,739 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-02 23:11:18] 2025-06-03 03:11:05,739 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-02 23:11:18] 2025-06-03 03:11:05,739 | INFO     | job 6677388252 has completed (purged errors)
[2025-06-02 23:11:18] 2025-06-03 03:11:05,739 | INFO     | overall cleanup function is called
[2025-06-02 23:11:18] 2025-06-03 03:11:06,746 | INFO     | --- collectZombieJob: --- 10, [3506467]
[2025-06-02 23:11:18] 2025-06-03 03:11:06,746 | INFO     | zombie collector waiting for pid 3506467
[2025-06-02 23:11:18] 2025-06-03 03:11:06,747 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-02 23:11:18] 2025-06-03 03:11:06,747 | INFO     | collected zombie processes
[2025-06-02 23:11:18] 2025-06-03 03:11:06,747 | INFO     | will attempt to kill all subprocesses of pid=3506467
[2025-06-02 23:11:18] 2025-06-03 03:11:07,106 | INFO     | process IDs to be killed: [3506467] (in reverse order)
[2025-06-02 23:11:18] 2025-06-03 03:11:07,253 | WARNING  | found no corresponding commands to process id(s)
[2025-06-02 23:11:18] 2025-06-03 03:11:07,254 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-02 23:11:18] 2025-06-03 03:11:07,274 | INFO     | did not find any defunct processes belonging to 3506467
[2025-06-02 23:11:18] 2025-06-03 03:11:07,293 | INFO     | did not find any defunct processes belonging to 3506467
[2025-06-02 23:11:18] 2025-06-03 03:11:07,294 | INFO     | ready for new job
[2025-06-02 23:11:18] 2025-06-03 03:11:07,294 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-02 23:11:18] 2025-06-03 03:11:07,295 | INFO     | **************************************
[2025-06-02 23:11:18] 2025-06-03 03:11:07,296 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-02 23:11:18] 2025-06-03 03:11:07,296 | INFO     | **************************************
[2025-06-02 23:11:18] 2025-06-03 03:11:07,296 | INFO     | 
[2025-06-02 23:11:18] 2025-06-03 03:11:07,313 | INFO     | architecture information:
[2025-06-02 23:11:18] 2025-06-03 03:11:07,314 | INFO     | executing command: cat /etc/os-release
[2025-06-02 23:11:18] 2025-06-03 03:11:07,331 | INFO     | cat /etc/os-release:
[2025-06-02 23:11:18] NAME="CentOS Linux"
[2025-06-02 23:11:18] VERSION="7 (Core)"
[2025-06-02 23:11:18] ID="centos"
[2025-06-02 23:11:18] ID_LIKE="rhel fedora"
[2025-06-02 23:11:18] VERSION_ID="7"
[2025-06-02 23:11:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-02 23:11:18] ANSI_COLOR="0;31"
[2025-06-02 23:11:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-02 23:11:18] HOME_URL="https://www.centos.org/"
[2025-06-02 23:11:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-02 23:11:18] 
[2025-06-02 23:11:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-02 23:11:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-02 23:11:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-02 23:11:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-02 23:11:18] 
[2025-06-02 23:11:18] 2025-06-03 03:11:07,331 | INFO     | **************************************
[2025-06-02 23:11:18] 2025-06-03 03:11:07,834 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-02 23:11:18] 2025-06-03 03:11:07,853 | INFO     | sufficient remaining disk space (418379726848 B)
[2025-06-02 23:11:18] 2025-06-03 03:11:07,854 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-02 23:11:18] 2025-06-03 03:11:07,854 | INFO     | current server update state: UPDATING_FINAL
[2025-06-02 23:11:18] 2025-06-03 03:11:07,854 | INFO     | update_server=False
[2025-06-02 23:11:18] 2025-06-03 03:11:07,854 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-02 23:11:18] 2025-06-03 03:11:07,854 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-02 23:11:18] 2025-06-03 03:11:07,909 | INFO     | found 0 job(s) in 20 queues
[2025-06-02 23:11:18] 2025-06-03 03:11:07,910 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-02 23:11:18] 2025-06-03 03:11:07,910 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-02 23:11:18] 2025-06-03 03:11:07,975 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-02 23:11:18] 2025-06-03 03:11:08,063 | INFO     | all job control threads have been joined
[2025-06-02 23:11:18] 2025-06-03 03:11:08,387 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-02 23:11:18] 2025-06-03 03:11:08,388 | INFO     | aborting loop
[2025-06-02 23:11:18] 2025-06-03 03:11:08,651 | INFO     | all payload control threads have been joined
[2025-06-02 23:11:18] 2025-06-03 03:11:08,773 | INFO     | all data control threads have been joined
[2025-06-02 23:11:18] 2025-06-03 03:11:08,860 | INFO     | [job] retrieve thread has finished
[2025-06-02 23:11:18] 2025-06-03 03:11:09,069 | INFO     | [job] control thread has finished
[2025-06-02 23:11:18] 2025-06-03 03:11:09,101 | INFO     | [payload] validate_pre thread has finished
[2025-06-02 23:11:18] 2025-06-03 03:11:09,111 | INFO     | [payload] failed_post thread has finished
[2025-06-02 23:11:18] 2025-06-03 03:11:09,392 | INFO     | [job] job monitor thread has finished
[2025-06-02 23:11:18] 2025-06-03 03:11:09,468 | INFO     | [payload] execute_payloads thread has finished
[2025-06-02 23:11:18] 2025-06-03 03:11:09,656 | INFO     | [payload] control thread has finished
[2025-06-02 23:11:18] 2025-06-03 03:11:09,778 | INFO     | [data] control thread has finished
[2025-06-02 23:11:18] 2025-06-03 03:11:09,837 | INFO     | [job] validate thread has finished
[2025-06-02 23:11:18] 2025-06-03 03:11:09,844 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-02 23:11:18] 2025-06-03 03:11:09,867 | INFO     | [job] create_data_payload thread has finished
[2025-06-02 23:11:18] 2025-06-03 03:11:09,980 | INFO     | [data] copytool_out thread has finished
[2025-06-02 23:11:18] 2025-06-03 03:11:10,039 | INFO     | [data] copytool_in thread has finished
[2025-06-02 23:11:18] 2025-06-03 03:11:10,328 | INFO     | [payload] validate_post thread has finished
[2025-06-02 23:11:18] 2025-06-03 03:11:10,417 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-02 23:11:18] 2025-06-03 03:11:11,419 | INFO     | [job] queue monitor thread has finished
[2025-06-02 23:11:18] 2025-06-03 03:11:11,861 | INFO     | [data] queue_monitor thread has finished
[2025-06-02 23:11:18] 2025-06-03 03:11:12,986 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140198043641664)>', '<ExcThread(monitor, started 140197681403648)>']
[2025-06-02 23:11:18] 2025-06-03 03:11:13,938 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-02 23:11:18] 2025-06-03 03:11:13,938 | INFO     | [monitor] control thread has ended
[2025-06-02 23:11:18] 2025-06-03 03:11:18,011 | INFO     | all workflow threads have been joined
[2025-06-02 23:11:18] 2025-06-03 03:11:18,011 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-02 23:11:18] 2025-06-03 03:11:18,012 | INFO     | traces error code: 0
[2025-06-02 23:11:18] 2025-06-03 03:11:18,012 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-02 23:11:18] 2025-06-03 03:11:18,147 [wrapper] ==== pilot stdout END ====
[2025-06-02 23:11:18] 2025-06-03 03:11:18,149 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-02 23:11:18] 2025-06-03 03:11:18,151 [wrapper] pilotpid: 3494066
[2025-06-02 23:11:18] 2025-06-03 03:11:18,153 [wrapper] Pilot exit status: 0
[2025-06-02 23:11:18] 2025-06-03 03:11:18,162 [wrapper] pandaids: 6677388252
[2025-06-02 23:11:18] 2025-06-03 03:11:18,250 [wrapper] cleanup supervisor_pilot  355715 3494067
[2025-06-02 23:11:18] 2025-06-03 03:11:18,252 [wrapper] Test setup, not cleaning
[2025-06-02 23:11:18] 2025-06-03 03:11:18,255 [wrapper] apfmon messages muted
[2025-06-02 23:11:18] 2025-06-03 03:11:18,258 [wrapper] ==== wrapper stdout END ====
[2025-06-02 23:11:18] 2025-06-03 03:11:18,260 [wrapper] ==== wrapper stderr END ====
[2025-06-02 23:11:18]  *** Error codes and diagnostics ***
[2025-06-02 23:11:18]     "exeErrorCode": 0,
[2025-06-02 23:11:18]     "exeErrorDiag": "",
[2025-06-02 23:11:18]     "pilotErrorCode": 0,
[2025-06-02 23:11:18]     "pilotErrorDiag": "",
[2025-06-02 23:11:18]  *** Listing of results directory ***
[2025-06-02 23:11:18] total 392400
[2025-06-02 23:11:18] -rw-r--r--. 1 boincer umatlas    495897 Jun  2 13:25 pilot3.tar.gz
[2025-06-02 23:11:18] -rw-r--r--. 1 boincer umatlas      5111 Jun  2 13:35 queuedata.json
[2025-06-02 23:11:18] -rwx------. 1 boincer umatlas     37140 Jun  2 13:37 runpilot2-wrapper.sh
[2025-06-02 23:11:18] -rw-r--r--. 1 boincer umatlas       100 Jun  2 21:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-02 23:11:18] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  2 21:34 run_atlas
[2025-06-02 23:11:18] -rw-r--r--. 1 boincer umatlas       105 Jun  2 21:34 job.xml
[2025-06-02 23:11:18] -rw-r--r--. 2 boincer umatlas 219581898 Jun  2 21:34 EVNT.45006593._000236.pool.root.1
[2025-06-02 23:11:18] -rw-r--r--. 2 boincer umatlas     15093 Jun  2 21:34 start_atlas.sh
[2025-06-02 23:11:18] drwxrwx--x. 2 boincer umatlas        68 Jun  2 21:34 shared
[2025-06-02 23:11:18] -rw-r--r--. 2 boincer umatlas    508879 Jun  2 21:34 input.tar.gz
[2025-06-02 23:11:18] -rw-r--r--. 1 boincer umatlas         0 Jun  2 21:34 boinc_lockfile
[2025-06-02 23:11:18] -rw-r--r--. 1 boincer umatlas      2520 Jun  2 21:34 pandaJob.out
[2025-06-02 23:11:18] -rw-------. 1 boincer umatlas    988073 Jun  2 21:35 agis_schedconf.cvmfs.json
[2025-06-02 23:11:18] -rw-------. 1 boincer umatlas   1603667 Jun  2 21:35 agis_ddmendpoints.agis.ALL.json
[2025-06-02 23:11:18] drwx------. 4 boincer umatlas      4096 Jun  2 21:35 pilot3
[2025-06-02 23:11:18] -rw-r--r--. 1 boincer umatlas      6879 Jun  2 23:02 init_data.xml
[2025-06-02 23:11:18] -rw-------. 1 boincer umatlas 176730769 Jun  2 23:10 HITS.45006595._005880.pool.root.1
[2025-06-02 23:11:18] -rw-r--r--. 1 boincer umatlas       529 Jun  2 23:10 boinc_task_state.xml
[2025-06-02 23:11:18] -rw-------. 1 boincer umatlas      1042 Jun  2 23:10 memory_monitor_summary.json
[2025-06-02 23:11:18] -rw-r--r--. 1 boincer umatlas      8192 Jun  2 23:10 boinc_mmap_file
[2025-06-02 23:11:18] -rw-r--r--. 1 boincer umatlas        27 Jun  2 23:10 wrapper_checkpoint.txt
[2025-06-02 23:11:18] -rw-------. 1 boincer umatlas    302338 Jun  2 23:10 log.45006595._005880.job.log.tgz.1
[2025-06-02 23:11:18] -rw-------. 1 boincer umatlas        95 Jun  2 23:10 pilot_heartbeat.json
[2025-06-02 23:11:18] -rw-------. 1 boincer umatlas      7714 Jun  2 23:11 heartbeat.json
[2025-06-02 23:11:18] -rw-------. 1 boincer umatlas      4354 Jun  2 23:11 pilotlog.txt
[2025-06-02 23:11:18] -rw-------. 1 boincer umatlas    538233 Jun  2 23:11 log.45006595._005880.job.log.1
[2025-06-02 23:11:18] -rw-------. 1 boincer umatlas       357 Jun  2 23:11 output.list
[2025-06-02 23:11:18] -rw-r--r--. 1 boincer umatlas       620 Jun  2 23:11 runtime_log
[2025-06-02 23:11:18] -rw-------. 1 boincer umatlas    860160 Jun  2 23:11 result.tar.gz
[2025-06-02 23:11:18] -rw-------. 1 boincer umatlas       651 Jun  2 23:11 TEqKDm8GOg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmcnfKDm3pf07m.diag
[2025-06-02 23:11:18] -rw-r--r--. 1 boincer umatlas      8654 Jun  2 23:11 runtime_log.err
[2025-06-02 23:11:18] -rw-r--r--. 1 boincer umatlas     21248 Jun  2 23:11 stderr.txt
[2025-06-02 23:11:18] HITS file was successfully produced:
[2025-06-02 23:11:18] -rw-------. 1 boincer umatlas 176730769 Jun  2 23:10 shared/HITS.pool.root.1
[2025-06-02 23:11:18]  *** Contents of shared directory: ***
[2025-06-02 23:11:18] total 388384
[2025-06-02 23:11:18] -rw-r--r--. 2 boincer umatlas 219581898 Jun  2 21:34 ATLAS.root_0
[2025-06-02 23:11:18] -rw-r--r--. 2 boincer umatlas     15093 Jun  2 21:34 start_atlas.sh
[2025-06-02 23:11:18] -rw-r--r--. 2 boincer umatlas    508879 Jun  2 21:34 input.tar.gz
[2025-06-02 23:11:18] -rw-------. 1 boincer umatlas 176730769 Jun  2 23:10 HITS.pool.root.1
[2025-06-02 23:11:18] -rw-------. 1 boincer umatlas    860160 Jun  2 23:11 result.tar.gz
23:11:19 (3487022): run_atlas exited; CPU time 35303.015610
23:11:19 (3487022): called boinc_finish(0)

</stderr_txt>
]]>

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