Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:59:03 (31228): wrapper (7.7.26015): starting
11:59:03 (31228): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 11:59:03] Arguments: --nthreads 8
[2025-06-03 11:59:03] Threads: 8
[2025-06-03 11:59:03] Checking for CVMFS
[2025-06-03 11:59:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 11:59:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 11:59:04] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 11:59:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 11:59:06] 2.11.2.0 13961 31641 89932 146737 3 19 22687171 25165825 4635 130560 0 15837589 99.764 18756025 2308 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 11:59:06] CVMFS is ok
[2025-06-03 11:59:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 11:59:06] Checking for apptainer binary...
[2025-06-03 11:59:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 11:59:06] Running /usr/bin/apptainer --version
[2025-06-03 11:59:06] apptainer version 1.3.2-1.el7
[2025-06-03 11:59:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 11:59:17] cg-vwn452.simple-grid.lan
[2025-06-03 11:59:17] apptainer works
[2025-06-03 11:59:17] Set ATHENA_PROC_NUMBER=8
[2025-06-03 11:59:17] Set ATHENA_CORE_NUMBER=8
[2025-06-03 11:59:17] Starting ATLAS job with PandaID=6677401044
[2025-06-03 11:59:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 16:05:12]  *** The last 200 lines of the pilot log: ***
[2025-06-03 16:05:12] 2025-06-03 13:39:36,786 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6677401044/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 16:05:12] 2025-06-03 13:39:36,786 | INFO     | extracted standard info from prmon json
[2025-06-03 16:05:12] 2025-06-03 13:39:36,786 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 16:05:12] 2025-06-03 13:39:36,786 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 16:05:12] 2025-06-03 13:39:36,787 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 16:05:12] 2025-06-03 13:39:36,787 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 16:05:12] 2025-06-03 13:39:36,792 | INFO     | fitting pss+swap vs Time
[2025-06-03 16:05:12] 2025-06-03 13:39:36,793 | INFO     | sum of square deviations: 2632440055.0
[2025-06-03 16:05:12] 2025-06-03 13:39:36,794 | INFO     | sum of deviations: 16687371670.000006
[2025-06-03 16:05:12] 2025-06-03 13:39:36,794 | INFO     | mean x: 1748951678.5
[2025-06-03 16:05:12] 2025-06-03 13:39:36,795 | INFO     | mean y: 2489926.4215686275
[2025-06-03 16:05:12] 2025-06-03 13:39:36,795 | INFO     | -- intersect: -11084336775.126953
[2025-06-03 16:05:12] 2025-06-03 13:39:36,795 | INFO     | intersect: -11084336775.126953
[2025-06-03 16:05:12] 2025-06-03 13:39:36,795 | INFO     | chi2: 6.438024913517941
[2025-06-03 16:05:12] 2025-06-03 13:39:36,796 | INFO     | sum of square deviations: 2443580700.0
[2025-06-03 16:05:12] 2025-06-03 13:39:36,797 | INFO     | sum of deviations: 30349575159.00001
[2025-06-03 16:05:12] 2025-06-03 13:39:36,797 | INFO     | mean x: 1748951526.0
[2025-06-03 16:05:12] 2025-06-03 13:39:36,797 | INFO     | mean y: 2500745.0251256283
[2025-06-03 16:05:12] 2025-06-03 13:39:36,797 | INFO     | -- intersect: -21719693978.39234
[2025-06-03 16:05:12] 2025-06-03 13:39:36,797 | INFO     | intersect: -21719693978.39234
[2025-06-03 16:05:12] 2025-06-03 13:39:36,798 | INFO     | chi2: 5.735960900876648
[2025-06-03 16:05:12] 2025-06-03 13:39:36,798 | INFO     | current chi2=5.735960900876648 (change=10.904959550050304 %)
[2025-06-03 16:05:12] 2025-06-03 13:39:36,798 | INFO     | right removable region: 198
[2025-06-03 16:05:12] 2025-06-03 13:39:36,798 | INFO     | sum of square deviations: 2443580700.0
[2025-06-03 16:05:12] 2025-06-03 13:39:36,800 | INFO     | sum of deviations: -52843405557.0
[2025-06-03 16:05:12] 2025-06-03 13:39:36,800 | INFO     | mean x: 1748951831.0
[2025-06-03 16:05:12] 2025-06-03 13:39:36,800 | INFO     | mean y: 2546004.0251256283
[2025-06-03 16:05:12] 2025-06-03 13:39:36,800 | INFO     | -- intersect: 37824325700.18606
[2025-06-03 16:05:12] 2025-06-03 13:39:36,800 | INFO     | intersect: 37824325700.18606
[2025-06-03 16:05:12] 2025-06-03 13:39:36,801 | INFO     | chi2: 1.8638859237685246
[2025-06-03 16:05:12] 2025-06-03 13:39:36,801 | INFO     | current chi2=1.8638859237685246 (change=71.04879293252007 %)
[2025-06-03 16:05:12] 2025-06-03 13:39:36,801 | INFO     | sum of square deviations: 2263977332.5
[2025-06-03 16:05:12] 2025-06-03 13:39:36,802 | INFO     | sum of deviations: -78184283220.99998
[2025-06-03 16:05:12] 2025-06-03 13:39:36,803 | INFO     | mean x: 1748951983.5
[2025-06-03 16:05:12] 2025-06-03 13:39:36,803 | INFO     | mean y: 2567330.7422680412
[2025-06-03 16:05:12] 2025-06-03 13:39:36,809 | INFO     | -- intersect: 60400944670.897766
[2025-06-03 16:05:12] 2025-06-03 13:39:36,809 | INFO     | intersect: 60400944670.897766
[2025-06-03 16:05:12] 2025-06-03 13:39:36,810 | INFO     | chi2: 0.971333373886907
[2025-06-03 16:05:12] 2025-06-03 13:39:36,810 | INFO     | current chi2=0.971333373886907 (change=47.8866511356552 %)
[2025-06-03 16:05:12] 2025-06-03 13:39:36,810 | INFO     | sum of square deviations: 2093397390.0
[2025-06-03 16:05:12] 2025-06-03 13:39:36,812 | INFO     | sum of deviations: -74579113925.0
[2025-06-03 16:05:12] 2025-06-03 13:39:36,812 | INFO     | mean x: 1748952136.0
[2025-06-03 16:05:12] 2025-06-03 13:39:36,812 | INFO     | mean y: 2564088.73015873
[2025-06-03 16:05:12] 2025-06-03 13:39:36,812 | INFO     | -- intersect: 62310514420.18447
[2025-06-03 16:05:12] 2025-06-03 13:39:36,812 | INFO     | intersect: 62310514420.18447
[2025-06-03 16:05:12] 2025-06-03 13:39:36,813 | INFO     | chi2: 0.9676478851169837
[2025-06-03 16:05:12] 2025-06-03 13:39:36,813 | INFO     | current chi2=0.9676478851169837 (change=0.3794257326066462 %)
[2025-06-03 16:05:12] 2025-06-03 13:39:36,813 | INFO     | left removable region: 30
[2025-06-03 16:05:12] 2025-06-03 13:39:36,813 | INFO     | sum of square deviations: 1470248962.0
[2025-06-03 16:05:12] 2025-06-03 13:39:36,814 | INFO     | sum of deviations: -44057662237.99999
[2025-06-03 16:05:12] 2025-06-03 13:39:36,814 | INFO     | mean x: 1748952410.5
[2025-06-03 16:05:12] 2025-06-03 13:39:36,814 | INFO     | mean y: 2561970.976190476
[2025-06-03 16:05:12] 2025-06-03 13:39:36,815 | INFO     | -- intersect: 52411886217.208786
[2025-06-03 16:05:12] 2025-06-03 13:39:36,815 | INFO     | intersect: 52411886217.208786
[2025-06-03 16:05:12] 2025-06-03 13:39:36,815 | INFO     | chi2: 0.1737147577814812
[2025-06-03 16:05:12] 2025-06-03 13:39:36,815 | INFO     | -- intersect: 52411886217.208786
[2025-06-03 16:05:12] 2025-06-03 13:39:36,815 | INFO     | current memory leak: -29.97 B/s (using 168 data points, chi2=0.17)
[2025-06-03 16:05:12] 2025-06-03 13:39:36,816 | INFO     | ..............................
[2025-06-03 16:05:12] 2025-06-03 13:39:36,816 | INFO     | . Timing measurements:
[2025-06-03 16:05:12] 2025-06-03 13:39:36,816 | INFO     | . get job = 0 s
[2025-06-03 16:05:12] 2025-06-03 13:39:36,816 | INFO     | . initial setup = 9 s
[2025-06-03 16:05:12] 2025-06-03 13:39:36,816 | INFO     | . payload setup = 171 s
[2025-06-03 16:05:12] 2025-06-03 13:39:36,816 | INFO     | . stage-in = 0 s
[2025-06-03 16:05:12] 2025-06-03 13:39:36,817 | INFO     | . payload execution = 12550 s
[2025-06-03 16:05:12] 2025-06-03 13:39:36,817 | INFO     | . stage-out = 4 s
[2025-06-03 16:05:12] 2025-06-03 13:39:36,817 | INFO     | . log creation = 1 s
[2025-06-03 16:05:12] 2025-06-03 13:39:36,817 | INFO     | ..............................
[2025-06-03 16:05:12] 2025-06-03 13:39:37,270 | INFO     | 
[2025-06-03 16:05:12] 2025-06-03 13:39:37,270 | INFO     | job summary report
[2025-06-03 16:05:12] 2025-06-03 13:39:37,270 | INFO     | --------------------------------------------------
[2025-06-03 16:05:12] 2025-06-03 13:39:37,271 | INFO     | PanDA job id: 6677401044
[2025-06-03 16:05:12] 2025-06-03 13:39:37,271 | INFO     | task id: 45006595
[2025-06-03 16:05:12] 2025-06-03 13:39:37,271 | INFO     | errors: (none)
[2025-06-03 16:05:12] 2025-06-03 13:39:37,271 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 16:05:12] 2025-06-03 13:39:37,271 | INFO     | pilot state: finished 
[2025-06-03 16:05:12] 2025-06-03 13:39:37,271 | INFO     | transexitcode: 0
[2025-06-03 16:05:12] 2025-06-03 13:39:37,271 | INFO     | exeerrorcode: 0
[2025-06-03 16:05:12] 2025-06-03 13:39:37,271 | INFO     | exeerrordiag: 
[2025-06-03 16:05:12] 2025-06-03 13:39:37,272 | INFO     | exitcode: 0
[2025-06-03 16:05:12] 2025-06-03 13:39:37,272 | INFO     | exitmsg: OK
[2025-06-03 16:05:12] 2025-06-03 13:39:37,272 | INFO     | cpuconsumptiontime: 46048 s
[2025-06-03 16:05:12] 2025-06-03 13:39:37,272 | INFO     | nevents: 400
[2025-06-03 16:05:12] 2025-06-03 13:39:37,272 | INFO     | neventsw: 0
[2025-06-03 16:05:12] 2025-06-03 13:39:37,272 | INFO     | pid: 15242
[2025-06-03 16:05:12] 2025-06-03 13:39:37,272 | INFO     | pgrp: 15242
[2025-06-03 16:05:12] 2025-06-03 13:39:37,272 | INFO     | corecount: 8
[2025-06-03 16:05:12] 2025-06-03 13:39:37,272 | INFO     | event service: False
[2025-06-03 16:05:12] 2025-06-03 13:39:37,273 | INFO     | sizes: {0: 2405011, 1: 2405210, 12: 2405210, 23: 2405238, 34: 2405266, 44: 2405294, 55: 2405450, 66: 2405478, 77: 2405506, 87: 2405562, 96: 2405796, 98: 2406104, 1
[2025-06-03 16:05:12] 2025-06-03 13:39:37,273 | INFO     | --------------------------------------------------
[2025-06-03 16:05:12] 2025-06-03 13:39:37,273 | INFO     | 
[2025-06-03 16:05:12] 2025-06-03 13:39:37,273 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-06-03 16:05:12] 2025-06-03 13:39:37,699 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 16:05:12] 2025-06-03 13:39:37,699 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 16:05:12] 2025-06-03 13:39:37,699 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 16:05:12] 2025-06-03 13:39:37,700 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 16:05:12] 2025-06-03 13:39:37,700 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 16:05:12] 2025-06-03 13:39:37,700 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 16:05:12] 2025-06-03 13:39:37,700 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 16:05:12] 2025-06-03 13:39:37,700 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 16:05:12] 2025-06-03 13:39:37,700 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 16:05:12] 2025-06-03 13:39:37,700 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 16:05:12] 2025-06-03 13:39:37,700 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 16:05:12] 2025-06-03 13:39:37,700 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 16:05:12] 2025-06-03 13:39:37,700 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 16:05:12] 2025-06-03 13:39:37,701 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 16:05:12] 2025-06-03 13:39:37,701 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 16:05:12] 2025-06-03 13:39:37,701 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 16:05:12] 2025-06-03 13:39:37,701 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 16:05:12] 2025-06-03 13:39:37,701 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 16:05:12] 2025-06-03 13:39:37,701 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 16:05:12] 2025-06-03 13:39:37,701 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 16:05:12] 2025-06-03 13:39:37,701 | INFO     | job 6677401044 has completed (purged errors)
[2025-06-03 16:05:12] 2025-06-03 13:39:37,701 | INFO     | overall cleanup function is called
[2025-06-03 16:05:12] 2025-06-03 13:39:38,710 | INFO     | --- collectZombieJob: --- 10, [15242]
[2025-06-03 16:05:12] 2025-06-03 13:39:38,710 | INFO     | zombie collector waiting for pid 15242
[2025-06-03 16:05:12] 2025-06-03 13:39:38,710 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 16:05:12] 2025-06-03 13:39:38,711 | INFO     | collected zombie processes
[2025-06-03 16:05:12] 2025-06-03 13:39:38,711 | INFO     | will attempt to kill all subprocesses of pid=15242
[2025-06-03 16:05:12] 2025-06-03 13:39:38,828 | INFO     | process IDs to be killed: [15242] (in reverse order)
[2025-06-03 16:05:12] 2025-06-03 13:39:39,616 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 16:05:12] 2025-06-03 13:39:39,616 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 16:05:12] 2025-06-03 13:39:39,620 | INFO     | did not find any defunct processes belonging to 15242
[2025-06-03 16:05:12] 2025-06-03 13:39:39,623 | INFO     | did not find any defunct processes belonging to 15242
[2025-06-03 16:05:12] 2025-06-03 13:39:39,623 | INFO     | ready for new job
[2025-06-03 16:05:12] 2025-06-03 13:39:39,623 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 16:05:12] 2025-06-03 13:39:39,625 | INFO     | **************************************
[2025-06-03 16:05:12] 2025-06-03 13:39:39,625 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 16:05:12] 2025-06-03 13:39:39,625 | INFO     | **************************************
[2025-06-03 16:05:12] 2025-06-03 13:39:39,625 | INFO     | 
[2025-06-03 16:05:12] 2025-06-03 13:39:39,626 | INFO     | pilot is running in a VM
[2025-06-03 16:05:12] 2025-06-03 13:39:39,626 | INFO     | architecture information:
[2025-06-03 16:05:12] 2025-06-03 13:39:39,643 | INFO     | executing command: cat /etc/os-release
[2025-06-03 16:05:12] 2025-06-03 13:39:39,775 | INFO     | cat /etc/os-release:
[2025-06-03 16:05:12] NAME="CentOS Linux"
[2025-06-03 16:05:12] VERSION="7 (Core)"
[2025-06-03 16:05:12] ID="centos"
[2025-06-03 16:05:12] ID_LIKE="rhel fedora"
[2025-06-03 16:05:12] VERSION_ID="7"
[2025-06-03 16:05:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 16:05:12] ANSI_COLOR="0;31"
[2025-06-03 16:05:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 16:05:12] HOME_URL="https://www.centos.org/"
[2025-06-03 16:05:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 16:05:12] 
[2025-06-03 16:05:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 16:05:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 16:05:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 16:05:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 16:05:12] 
[2025-06-03 16:05:12] 2025-06-03 13:39:39,775 | INFO     | **************************************
[2025-06-03 16:05:12] 2025-06-03 13:39:40,279 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-06-03 16:05:12] 2025-06-03 13:39:40,333 | INFO     | sufficient remaining disk space (496859348992 B)
[2025-06-03 16:05:12] 2025-06-03 13:39:40,334 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 16:05:12] 2025-06-03 13:39:40,334 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 16:05:12] 2025-06-03 13:39:40,334 | INFO     | update_server=False
[2025-06-03 16:05:12] 2025-06-03 13:39:40,334 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 16:05:12] 2025-06-03 13:39:40,455 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 16:05:12] 2025-06-03 13:39:40,455 | INFO     | aborting loop
[2025-06-03 16:05:12] 2025-06-03 13:39:40,560 | INFO     | all data control threads have been joined
[2025-06-03 16:05:12] 2025-06-03 13:39:40,901 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 16:05:12] 2025-06-03 13:39:40,901 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 16:05:12] 2025-06-03 13:39:40,902 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 16:05:12] 2025-06-03 13:39:40,923 | INFO     | all payload control threads have been joined
[2025-06-03 16:05:12] 2025-06-03 13:39:41,340 | INFO     | [job] retrieve thread has finished
[2025-06-03 16:05:12] 2025-06-03 13:39:41,402 | INFO     | [data] copytool_in thread has finished
[2025-06-03 16:05:12] 2025-06-03 13:39:41,418 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 16:05:12] 2025-06-03 13:39:41,461 | INFO     | [job] job monitor thread has finished
[2025-06-03 16:05:12] 2025-06-03 13:39:41,487 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 16:05:12] 2025-06-03 13:39:41,565 | INFO     | [data] control thread has finished
[2025-06-03 16:05:12] 2025-06-03 13:39:41,743 | INFO     | all job control threads have been joined
[2025-06-03 16:05:12] 2025-06-03 13:39:41,843 | INFO     | [payload] validate_post thread has finished
[2025-06-03 16:05:12] 2025-06-03 13:39:41,928 | INFO     | [payload] control thread has finished
[2025-06-03 16:05:12] 2025-06-03 13:39:42,017 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 16:05:12] 2025-06-03 13:39:42,079 | INFO     | [job] validate thread has finished
[2025-06-03 16:05:12] 2025-06-03 13:39:42,314 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 16:05:12] 2025-06-03 13:39:42,479 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 16:05:12] 2025-06-03 13:39:42,521 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 16:05:12] 2025-06-03 13:39:42,686 | INFO     | [payload] failed_post thread has finished
[2025-06-03 16:05:12] 2025-06-03 13:39:42,749 | INFO     | [job] control thread has finished
[2025-06-03 16:05:12] 2025-06-03 13:39:42,780 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 16:05:12] 2025-06-03 13:39:43,023 | INFO     | [job] queue monitor thread has finished
[2025-06-03 16:05:12] 2025-06-03 13:39:43,423 | INFO     | [data] copytool_out thread has finished
[2025-06-03 16:05:12] 2025-06-03 13:39:46,324 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 16:05:12] 2025-06-03 13:39:48,266 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139687011260224)>', '<ExcThread(monitor, started 139686496433920)>']
[2025-06-03 16:05:12] 2025-06-03 13:39:48,949 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 16:05:12] 2025-06-03 13:39:48,949 | INFO     | [monitor] control thread has ended
[2025-06-03 16:05:12] 2025-06-03 13:39:53,292 | INFO     | all workflow threads have been joined
[2025-06-03 16:05:12] 2025-06-03 13:39:53,292 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 16:05:12] 2025-06-03 13:39:53,293 | INFO     | traces error code: 0
[2025-06-03 16:05:12] 2025-06-03 13:39:53,293 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 16:05:12] 2025-06-03 13:39:53,696 [wrapper] ==== pilot stdout END ====
[2025-06-03 16:05:12] 2025-06-03 13:39:53,796 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 16:05:12] 2025-06-03 13:39:53,881 [wrapper] pilotpid: 8627
[2025-06-03 16:05:12] 2025-06-03 13:39:53,963 [wrapper] Pilot exit status: 0
[2025-06-03 16:05:12] 2025-06-03 13:39:54,349 [wrapper] pandaids: 6677401044
[2025-06-03 16:05:12] 2025-06-03 13:39:55,143 [wrapper] cleanup supervisor_pilot 32282 8628
[2025-06-03 16:05:12] 2025-06-03 13:39:55,233 [wrapper] Test setup, not cleaning
[2025-06-03 16:05:12] 2025-06-03 13:39:55,306 [wrapper] apfmon messages muted
[2025-06-03 16:05:12] 2025-06-03 13:39:55,398 [wrapper] ==== wrapper stdout END ====
[2025-06-03 16:05:12] 2025-06-03 13:39:55,468 [wrapper] ==== wrapper stderr END ====
[2025-06-03 16:05:12]  *** Error codes and diagnostics ***
[2025-06-03 16:05:12]     "exeErrorCode": 0,
[2025-06-03 16:05:12]     "exeErrorDiag": "",
[2025-06-03 16:05:12]     "pilotErrorCode": 0,
[2025-06-03 16:05:12]     "pilotErrorDiag": "",
[2025-06-03 16:05:12]  *** Listing of results directory ***
[2025-06-03 16:05:12] total 385008
[2025-06-03 16:05:12] -rw-r--r--. 1 boinc boinc      5111 Jun  2 23:09 queuedata.json
[2025-06-03 16:05:12] -rw-r--r--. 1 boinc boinc    495897 Jun  2 23:10 pilot3.tar.gz
[2025-06-03 16:05:12] -rwx------. 1 boinc boinc     37140 Jun  2 23:11 runpilot2-wrapper.sh
[2025-06-03 16:05:12] -rw-r--r--. 1 boinc boinc       100 Jun  3 11:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 16:05:12] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 11:59 run_atlas
[2025-06-03 16:05:12] -rw-r--r--. 1 boinc boinc       105 Jun  3 11:59 job.xml
[2025-06-03 16:05:12] -rw-r--r--. 2 boinc boinc 215517623 Jun  3 11:59 EVNT.45006593._000479.pool.root.1
[2025-06-03 16:05:12] -rw-r--r--. 2 boinc boinc     15093 Jun  3 11:59 start_atlas.sh
[2025-06-03 16:05:12] drwxrwx--x. 2 boinc boinc        68 Jun  3 11:59 shared
[2025-06-03 16:05:12] -rw-r--r--. 2 boinc boinc    508877 Jun  3 11:59 input.tar.gz
[2025-06-03 16:05:12] -rw-r--r--. 1 boinc boinc      6390 Jun  3 11:59 init_data.xml
[2025-06-03 16:05:12] -rw-r--r--. 1 boinc boinc         0 Jun  3 11:59 boinc_lockfile
[2025-06-03 16:05:12] -rw-r--r--. 1 boinc boinc      2524 Jun  3 11:59 pandaJob.out
[2025-06-03 16:05:12] -rw-------. 1 boinc boinc    985490 Jun  3 12:02 agis_schedconf.cvmfs.json
[2025-06-03 16:05:12] drwx------. 4 boinc boinc      4096 Jun  3 12:02 pilot3
[2025-06-03 16:05:12] -rw-------. 1 boinc boinc 171940074 Jun  3 15:36 HITS.45006595._011961.pool.root.1
[2025-06-03 16:05:12] -rw-r--r--. 1 boinc boinc       531 Jun  3 15:37 boinc_task_state.xml
[2025-06-03 16:05:12] -rw-------. 1 boinc boinc      1018 Jun  3 15:37 memory_monitor_summary.json
[2025-06-03 16:05:12] -rw-------. 1 boinc boinc   1603667 Jun  3 15:38 agis_ddmendpoints.agis.ALL.json
[2025-06-03 16:05:12] -rw-------. 1 boinc boinc    370602 Jun  3 15:38 log.45006595._011961.job.log.tgz.1
[2025-06-03 16:05:12] -rw-------. 1 boinc boinc        95 Jun  3 15:39 pilot_heartbeat.json
[2025-06-03 16:05:12] -rw-------. 1 boinc boinc      7694 Jun  3 15:39 heartbeat.json
[2025-06-03 16:05:12] -rw-------. 1 boinc boinc      4416 Jun  3 15:39 pilotlog.txt
[2025-06-03 16:05:12] -rw-------. 1 boinc boinc   1110743 Jun  3 15:39 log.45006595._011961.job.log.1
[2025-06-03 16:05:12] -rw-------. 1 boinc boinc       357 Jun  3 15:39 output.list
[2025-06-03 16:05:12] -rw-r--r--. 1 boinc boinc       620 Jun  3 15:39 runtime_log
[2025-06-03 16:05:12] -rw-------. 1 boinc boinc   1505280 Jun  3 15:39 result.tar.gz
[2025-06-03 16:05:12] -rw-------. 1 boinc boinc       656 Jun  3 15:39 swkMDmHcRg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmPjgKDmTyvKpm.diag
[2025-06-03 16:05:12] -rw-r--r--. 1 boinc boinc      8659 Jun  3 15:39 runtime_log.err
[2025-06-03 16:05:12] -rw-r--r--. 1 boinc boinc      8192 Jun  3 16:05 boinc_mmap_file
[2025-06-03 16:05:12] -rw-r--r--. 1 boinc boinc        28 Jun  3 16:05 wrapper_checkpoint.txt
[2025-06-03 16:05:12] -rw-r--r--. 1 boinc boinc     20526 Jun  3 16:05 stderr.txt
[2025-06-03 16:05:12] HITS file was successfully produced:
[2025-06-03 16:05:12] -rw-------. 1 boinc boinc 171940074 Jun  3 15:36 shared/HITS.pool.root.1
[2025-06-03 16:05:12]  *** Contents of shared directory: ***
[2025-06-03 16:05:12] total 380368
[2025-06-03 16:05:12] -rw-r--r--. 2 boinc boinc 215517623 Jun  3 11:59 ATLAS.root_0
[2025-06-03 16:05:12] -rw-r--r--. 2 boinc boinc     15093 Jun  3 11:59 start_atlas.sh
[2025-06-03 16:05:12] -rw-r--r--. 2 boinc boinc    508877 Jun  3 11:59 input.tar.gz
[2025-06-03 16:05:12] -rw-------. 1 boinc boinc 171940074 Jun  3 15:36 HITS.pool.root.1
[2025-06-03 16:05:12] -rw-------. 1 boinc boinc   1505280 Jun  3 15:39 result.tar.gz
16:05:14 (31228): run_atlas exited; CPU time 46227.687953
16:05:14 (31228): called boinc_finish(0)

</stderr_txt>
]]>

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