Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:31:29 (25099): wrapper (7.7.26015): starting
11:31:29 (25099): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 11:31:29] Arguments: --nthreads 8
[2025-06-03 11:31:29] Threads: 8
[2025-06-03 11:31:29] Checking for CVMFS
[2025-06-03 11:31:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 11:31:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 11:31:31] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 11:31:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 11:31:32] 2.11.2.0 26867 31591 91808 146735 2 59 12884954 25165825 4633 130560 0 16107167 99.834 17370492 1943 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 11:31:32] CVMFS is ok
[2025-06-03 11:31:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 11:31:32] Checking for apptainer binary...
[2025-06-03 11:31:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 11:31:32] Running /usr/bin/apptainer --version
[2025-06-03 11:31:32] apptainer version 1.3.2-1.el7
[2025-06-03 11:31:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 11:31:44] cg-vwn435.simple-grid.lan
[2025-06-03 11:31:44] apptainer works
[2025-06-03 11:31:44] Set ATHENA_PROC_NUMBER=8
[2025-06-03 11:31:44] Set ATHENA_CORE_NUMBER=8
[2025-06-03 11:31:44] Starting ATLAS job with PandaID=6677401093
[2025-06-03 11:31:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 16:56:19]  *** The last 200 lines of the pilot log: ***
[2025-06-03 16:56:19] 2025-06-03 13:25:15,136 | INFO     | extracted standard info from prmon json
[2025-06-03 16:56:19] 2025-06-03 13:25:15,136 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 16:56:19] 2025-06-03 13:25:15,136 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 16:56:19] 2025-06-03 13:25:15,137 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 16:56:19] 2025-06-03 13:25:15,137 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 16:56:19] 2025-06-03 13:25:15,142 | INFO     | fitting pss+swap vs Time
[2025-06-03 16:56:19] 2025-06-03 13:25:15,143 | INFO     | sum of square deviations: 3124858590.0
[2025-06-03 16:56:19] 2025-06-03 13:25:15,144 | INFO     | sum of deviations: 8186186854.499973
[2025-06-03 16:56:19] 2025-06-03 13:25:15,145 | INFO     | mean x: 1748950436.5
[2025-06-03 16:56:19] 2025-06-03 13:25:15,145 | INFO     | mean y: 2526353.763888889
[2025-06-03 16:56:19] 2025-06-03 13:25:15,145 | INFO     | -- intersect: -4579196197.863091
[2025-06-03 16:56:19] 2025-06-03 13:25:15,145 | INFO     | intersect: -4579196197.863091
[2025-06-03 16:56:19] 2025-06-03 13:25:15,145 | INFO     | chi2: 6.733386807001553
[2025-06-03 16:56:19] 2025-06-03 13:25:15,146 | INFO     | sum of square deviations: 2912836010.0
[2025-06-03 16:56:19] 2025-06-03 13:25:15,147 | INFO     | sum of deviations: 23878829237.00001
[2025-06-03 16:56:19] 2025-06-03 13:25:15,148 | INFO     | mean x: 1748950284.0
[2025-06-03 16:56:19] 2025-06-03 13:25:15,148 | INFO     | mean y: 2537448.8009478673
[2025-06-03 16:56:19] 2025-06-03 13:25:15,148 | INFO     | -- intersect: -14334996498.274458
[2025-06-03 16:56:19] 2025-06-03 13:25:15,148 | INFO     | intersect: -14334996498.274458
[2025-06-03 16:56:19] 2025-06-03 13:25:15,148 | INFO     | chi2: 6.022319325952948
[2025-06-03 16:56:19] 2025-06-03 13:25:15,148 | INFO     | current chi2=6.022319325952948 (change=10.560324268156087 %)
[2025-06-03 16:56:19] 2025-06-03 13:25:15,149 | INFO     | right removable region: 210
[2025-06-03 16:56:19] 2025-06-03 13:25:15,149 | INFO     | sum of square deviations: 2912836010.0
[2025-06-03 16:56:19] 2025-06-03 13:25:15,157 | INFO     | sum of deviations: -69398406190.0
[2025-06-03 16:56:19] 2025-06-03 13:25:15,157 | INFO     | mean x: 1748950589.0
[2025-06-03 16:56:19] 2025-06-03 13:25:15,157 | INFO     | mean y: 2582111.113744076
[2025-06-03 16:56:19] 2025-06-03 13:25:15,158 | INFO     | -- intersect: 41671382882.929855
[2025-06-03 16:56:19] 2025-06-03 13:25:15,158 | INFO     | intersect: 41671382882.929855
[2025-06-03 16:56:19] 2025-06-03 13:25:15,158 | INFO     | chi2: 1.8452405518575263
[2025-06-03 16:56:19] 2025-06-03 13:25:15,158 | INFO     | current chi2=1.8452405518575263 (change=72.59565498392581 %)
[2025-06-03 16:56:19] 2025-06-03 13:25:15,159 | INFO     | sum of square deviations: 2710627567.5
[2025-06-03 16:56:19] 2025-06-03 13:25:15,160 | INFO     | sum of deviations: -95663771611.0
[2025-06-03 16:56:19] 2025-06-03 13:25:15,161 | INFO     | mean x: 1748950741.5
[2025-06-03 16:56:19] 2025-06-03 13:25:15,161 | INFO     | mean y: 2601750.9514563107
[2025-06-03 16:56:19] 2025-06-03 13:25:15,161 | INFO     | -- intersect: 61726767143.416466
[2025-06-03 16:56:19] 2025-06-03 13:25:15,161 | INFO     | intersect: 61726767143.416466
[2025-06-03 16:56:19] 2025-06-03 13:25:15,161 | INFO     | chi2: 0.9902315223035891
[2025-06-03 16:56:19] 2025-06-03 13:25:15,162 | INFO     | current chi2=0.9902315223035891 (change=46.33591152618207 %)
[2025-06-03 16:56:19] 2025-06-03 13:25:15,162 | INFO     | sum of square deviations: 2518000700.0
[2025-06-03 16:56:19] 2025-06-03 13:25:15,163 | INFO     | sum of deviations: -94242515226.0
[2025-06-03 16:56:19] 2025-06-03 13:25:15,164 | INFO     | mean x: 1748950894.0
[2025-06-03 16:56:19] 2025-06-03 13:25:15,164 | INFO     | mean y: 2600594.3233830845
[2025-06-03 16:56:19] 2025-06-03 13:25:15,164 | INFO     | -- intersect: 65461490759.57286
[2025-06-03 16:56:19] 2025-06-03 13:25:15,164 | INFO     | intersect: 65461490759.57286
[2025-06-03 16:56:19] 2025-06-03 13:25:15,164 | INFO     | chi2: 0.9662504175975956
[2025-06-03 16:56:19] 2025-06-03 13:25:15,164 | INFO     | current chi2=0.9662504175975956 (change=2.4217674519395223 %)
[2025-06-03 16:56:19] 2025-06-03 13:25:15,165 | INFO     | left removable region: 30
[2025-06-03 16:56:19] 2025-06-03 13:25:15,165 | INFO     | sum of square deviations: 1808350185.0
[2025-06-03 16:56:19] 2025-06-03 13:25:15,166 | INFO     | sum of deviations: -64560571494.5
[2025-06-03 16:56:19] 2025-06-03 13:25:15,166 | INFO     | mean x: 1748951168.5
[2025-06-03 16:56:19] 2025-06-03 13:25:15,167 | INFO     | mean y: 2603663.0166666666
[2025-06-03 16:56:19] 2025-06-03 13:25:15,167 | INFO     | -- intersect: 62442549139.80139
[2025-06-03 16:56:19] 2025-06-03 13:25:15,167 | INFO     | intersect: 62442549139.80139
[2025-06-03 16:56:19] 2025-06-03 13:25:15,167 | INFO     | chi2: 0.16530985861073821
[2025-06-03 16:56:19] 2025-06-03 13:25:15,167 | INFO     | -- intersect: 62442549139.80139
[2025-06-03 16:56:19] 2025-06-03 13:25:15,168 | INFO     | current memory leak: -35.70 B/s (using 180 data points, chi2=0.17)
[2025-06-03 16:56:19] 2025-06-03 13:25:15,168 | INFO     | ..............................
[2025-06-03 16:56:19] 2025-06-03 13:25:15,168 | INFO     | . Timing measurements:
[2025-06-03 16:56:19] 2025-06-03 13:25:15,169 | INFO     | . get job = 0 s
[2025-06-03 16:56:19] 2025-06-03 13:25:15,169 | INFO     | . initial setup = 13 s
[2025-06-03 16:56:19] 2025-06-03 13:25:15,169 | INFO     | . payload setup = 160 s
[2025-06-03 16:56:19] 2025-06-03 13:25:15,169 | INFO     | . stage-in = 0 s
[2025-06-03 16:56:19] 2025-06-03 13:25:15,169 | INFO     | . payload execution = 13361 s
[2025-06-03 16:56:19] 2025-06-03 13:25:15,169 | INFO     | . stage-out = 4 s
[2025-06-03 16:56:19] 2025-06-03 13:25:15,169 | INFO     | . log creation = 1 s
[2025-06-03 16:56:19] 2025-06-03 13:25:15,169 | INFO     | ..............................
[2025-06-03 16:56:19] 2025-06-03 13:25:15,727 | INFO     | 
[2025-06-03 16:56:19] 2025-06-03 13:25:15,728 | INFO     | job summary report
[2025-06-03 16:56:19] 2025-06-03 13:25:15,728 | INFO     | --------------------------------------------------
[2025-06-03 16:56:19] 2025-06-03 13:25:15,728 | INFO     | PanDA job id: 6677401093
[2025-06-03 16:56:19] 2025-06-03 13:25:15,728 | INFO     | task id: 45006595
[2025-06-03 16:56:19] 2025-06-03 13:25:15,728 | INFO     | errors: (none)
[2025-06-03 16:56:19] 2025-06-03 13:25:15,728 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 16:56:19] 2025-06-03 13:25:15,728 | INFO     | pilot state: finished 
[2025-06-03 16:56:19] 2025-06-03 13:25:15,729 | INFO     | transexitcode: 0
[2025-06-03 16:56:19] 2025-06-03 13:25:15,729 | INFO     | exeerrorcode: 0
[2025-06-03 16:56:19] 2025-06-03 13:25:15,729 | INFO     | exeerrordiag: 
[2025-06-03 16:56:19] 2025-06-03 13:25:15,729 | INFO     | exitcode: 0
[2025-06-03 16:56:19] 2025-06-03 13:25:15,729 | INFO     | exitmsg: OK
[2025-06-03 16:56:19] 2025-06-03 13:25:15,729 | INFO     | cpuconsumptiontime: 49620 s
[2025-06-03 16:56:19] 2025-06-03 13:25:15,729 | INFO     | nevents: 400
[2025-06-03 16:56:19] 2025-06-03 13:25:15,729 | INFO     | neventsw: 0
[2025-06-03 16:56:19] 2025-06-03 13:25:15,729 | INFO     | pid: 13080
[2025-06-03 16:56:19] 2025-06-03 13:25:15,730 | INFO     | pgrp: 13080
[2025-06-03 16:56:19] 2025-06-03 13:25:15,730 | INFO     | corecount: 8
[2025-06-03 16:56:19] 2025-06-03 13:25:15,730 | INFO     | event service: False
[2025-06-03 16:56:19] 2025-06-03 13:25:15,730 | INFO     | sizes: {0: 2404354, 1: 2405039, 2: 2405238, 13: 2405238, 24: 2405294, 34: 2405322, 45: 2405478, 56: 2405506, 66: 2405534, 77: 2405562, 86: 2405824, 88: 2406132, 13
[2025-06-03 16:56:19] 2025-06-03 13:25:15,730 | INFO     | --------------------------------------------------
[2025-06-03 16:56:19] 2025-06-03 13:25:15,730 | INFO     | 
[2025-06-03 16:56:19] 2025-06-03 13:25:15,730 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-06-03 16:56:19] 2025-06-03 13:25:16,250 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 16:56:19] 2025-06-03 13:25:16,250 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 16:56:19] 2025-06-03 13:25:16,250 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 16:56:19] 2025-06-03 13:25:16,250 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 16:56:19] 2025-06-03 13:25:16,251 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 16:56:19] 2025-06-03 13:25:16,251 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 16:56:19] 2025-06-03 13:25:16,251 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 16:56:19] 2025-06-03 13:25:16,251 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 16:56:19] 2025-06-03 13:25:16,251 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 16:56:19] 2025-06-03 13:25:16,251 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 16:56:19] 2025-06-03 13:25:16,251 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 16:56:19] 2025-06-03 13:25:16,251 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 16:56:19] 2025-06-03 13:25:16,251 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 16:56:19] 2025-06-03 13:25:16,251 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 16:56:19] 2025-06-03 13:25:16,252 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 16:56:19] 2025-06-03 13:25:16,252 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 16:56:19] 2025-06-03 13:25:16,252 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 16:56:19] 2025-06-03 13:25:16,252 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 16:56:19] 2025-06-03 13:25:16,252 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 16:56:19] 2025-06-03 13:25:16,252 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 16:56:19] 2025-06-03 13:25:16,252 | INFO     | job 6677401093 has completed (purged errors)
[2025-06-03 16:56:19] 2025-06-03 13:25:16,252 | INFO     | overall cleanup function is called
[2025-06-03 16:56:19] 2025-06-03 13:25:17,261 | INFO     | --- collectZombieJob: --- 10, [13080]
[2025-06-03 16:56:19] 2025-06-03 13:25:17,262 | INFO     | zombie collector waiting for pid 13080
[2025-06-03 16:56:19] 2025-06-03 13:25:17,262 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 16:56:19] 2025-06-03 13:25:17,262 | INFO     | collected zombie processes
[2025-06-03 16:56:19] 2025-06-03 13:25:17,262 | INFO     | will attempt to kill all subprocesses of pid=13080
[2025-06-03 16:56:19] 2025-06-03 13:25:17,415 | INFO     | process IDs to be killed: [13080] (in reverse order)
[2025-06-03 16:56:19] 2025-06-03 13:25:18,095 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 16:56:19] 2025-06-03 13:25:18,096 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 16:56:19] 2025-06-03 13:25:18,099 | INFO     | did not find any defunct processes belonging to 13080
[2025-06-03 16:56:19] 2025-06-03 13:25:18,102 | INFO     | did not find any defunct processes belonging to 13080
[2025-06-03 16:56:19] 2025-06-03 13:25:18,103 | INFO     | ready for new job
[2025-06-03 16:56:19] 2025-06-03 13:25:18,103 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 16:56:19] 2025-06-03 13:25:18,105 | INFO     | **************************************
[2025-06-03 16:56:19] 2025-06-03 13:25:18,105 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 16:56:19] 2025-06-03 13:25:18,105 | INFO     | **************************************
[2025-06-03 16:56:19] 2025-06-03 13:25:18,105 | INFO     | 
[2025-06-03 16:56:19] 2025-06-03 13:25:18,106 | INFO     | pilot is running in a VM
[2025-06-03 16:56:19] 2025-06-03 13:25:18,106 | INFO     | architecture information:
[2025-06-03 16:56:19] 2025-06-03 13:25:18,120 | INFO     | executing command: cat /etc/os-release
[2025-06-03 16:56:19] 2025-06-03 13:25:18,398 | INFO     | cat /etc/os-release:
[2025-06-03 16:56:19] NAME="CentOS Linux"
[2025-06-03 16:56:19] VERSION="7 (Core)"
[2025-06-03 16:56:19] ID="centos"
[2025-06-03 16:56:19] ID_LIKE="rhel fedora"
[2025-06-03 16:56:19] VERSION_ID="7"
[2025-06-03 16:56:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 16:56:19] ANSI_COLOR="0;31"
[2025-06-03 16:56:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 16:56:19] HOME_URL="https://www.centos.org/"
[2025-06-03 16:56:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 16:56:19] 
[2025-06-03 16:56:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 16:56:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 16:56:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 16:56:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 16:56:19] 
[2025-06-03 16:56:19] 2025-06-03 13:25:18,398 | INFO     | **************************************
[2025-06-03 16:56:19] 2025-06-03 13:25:18,902 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-06-03 16:56:19] 2025-06-03 13:25:19,097 | INFO     | sufficient remaining disk space (496533241856 B)
[2025-06-03 16:56:19] 2025-06-03 13:25:19,097 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 16:56:19] 2025-06-03 13:25:19,098 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 16:56:19] 2025-06-03 13:25:19,098 | INFO     | update_server=False
[2025-06-03 16:56:19] 2025-06-03 13:25:19,098 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 16:56:19] 2025-06-03 13:25:19,098 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 16:56:19] 2025-06-03 13:25:19,099 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 16:56:19] 2025-06-03 13:25:19,100 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 16:56:19] 2025-06-03 13:25:19,100 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 16:56:19] 2025-06-03 13:25:19,100 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 16:56:19] 2025-06-03 13:25:19,221 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 16:56:19] 2025-06-03 13:25:19,222 | INFO     | aborting loop
[2025-06-03 16:56:19] 2025-06-03 13:25:19,346 | INFO     | all data control threads have been joined
[2025-06-03 16:56:19] 2025-06-03 13:25:19,613 | INFO     | all job control threads have been joined
[2025-06-03 16:56:19] 2025-06-03 13:25:19,709 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 16:56:19] 2025-06-03 13:25:20,104 | INFO     | [job] retrieve thread has finished
[2025-06-03 16:56:19] 2025-06-03 13:25:20,112 | INFO     | [payload] failed_post thread has finished
[2025-06-03 16:56:19] 2025-06-03 13:25:20,228 | INFO     | [job] job monitor thread has finished
[2025-06-03 16:56:19] 2025-06-03 13:25:20,275 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 16:56:19] 2025-06-03 13:25:20,352 | INFO     | [data] control thread has finished
[2025-06-03 16:56:19] 2025-06-03 13:25:20,361 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 16:56:19] 2025-06-03 13:25:20,494 | INFO     | all payload control threads have been joined
[2025-06-03 16:56:19] 2025-06-03 13:25:20,619 | INFO     | [job] control thread has finished
[2025-06-03 16:56:19] 2025-06-03 13:25:20,803 | INFO     | [job] validate thread has finished
[2025-06-03 16:56:19] 2025-06-03 13:25:21,232 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 16:56:19] 2025-06-03 13:25:21,367 | INFO     | [job] queue monitor thread has finished
[2025-06-03 16:56:19] 2025-06-03 13:25:21,395 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 16:56:19] 2025-06-03 13:25:21,406 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 16:56:19] 2025-06-03 13:25:21,420 | INFO     | [data] copytool_in thread has finished
[2025-06-03 16:56:19] 2025-06-03 13:25:21,500 | INFO     | [payload] control thread has finished
[2025-06-03 16:56:19] 2025-06-03 13:25:21,667 | INFO     | [payload] validate_post thread has finished
[2025-06-03 16:56:19] 2025-06-03 13:25:21,716 | INFO     | [data] copytool_out thread has finished
[2025-06-03 16:56:19] 2025-06-03 13:25:23,107 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 16:56:19] 2025-06-03 13:25:24,660 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139763296454464)>', '<ExcThread(monitor, started 139762715318016)>']
[2025-06-03 16:56:19] 2025-06-03 13:25:25,135 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 16:56:19] 2025-06-03 13:25:25,136 | INFO     | [monitor] control thread has ended
[2025-06-03 16:56:19] 2025-06-03 13:25:29,686 | INFO     | all workflow threads have been joined
[2025-06-03 16:56:19] 2025-06-03 13:25:29,687 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 16:56:19] 2025-06-03 13:25:29,687 | INFO     | traces error code: 0
[2025-06-03 16:56:19] 2025-06-03 13:25:29,687 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 16:56:19] 2025-06-03 13:25:30,027 [wrapper] ==== pilot stdout END ====
[2025-06-03 16:56:19] 2025-06-03 13:25:30,127 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 16:56:19] 2025-06-03 13:25:30,229 [wrapper] pilotpid: 28929
[2025-06-03 16:56:19] 2025-06-03 13:25:30,327 [wrapper] Pilot exit status: 0
[2025-06-03 16:56:19] 2025-06-03 13:25:30,804 [wrapper] pandaids: 6677401093
[2025-06-03 16:56:19] 2025-06-03 13:25:31,764 [wrapper] cleanup supervisor_pilot 20079 28930
[2025-06-03 16:56:19] 2025-06-03 13:25:31,876 [wrapper] Test setup, not cleaning
[2025-06-03 16:56:19] 2025-06-03 13:25:31,978 [wrapper] apfmon messages muted
[2025-06-03 16:56:19] 2025-06-03 13:25:32,047 [wrapper] ==== wrapper stdout END ====
[2025-06-03 16:56:19] 2025-06-03 13:25:32,147 [wrapper] ==== wrapper stderr END ====
[2025-06-03 16:56:19]  *** Error codes and diagnostics ***
[2025-06-03 16:56:19]     "exeErrorCode": 0,
[2025-06-03 16:56:19]     "exeErrorDiag": "",
[2025-06-03 16:56:19]     "pilotErrorCode": 0,
[2025-06-03 16:56:19]     "pilotErrorDiag": "",
[2025-06-03 16:56:19]  *** Listing of results directory ***
[2025-06-03 16:56:19] total 392264
[2025-06-03 16:56:19] -rw-r--r--. 1 boinc boinc    495897 Jun  2 23:10 pilot3.tar.gz
[2025-06-03 16:56:19] -rwx------. 1 boinc boinc     37140 Jun  2 23:12 runpilot2-wrapper.sh
[2025-06-03 16:56:19] -rw-r--r--. 1 boinc boinc      5111 Jun  2 23:12 queuedata.json
[2025-06-03 16:56:19] -rw-r--r--. 1 boinc boinc       100 Jun  3 11:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 16:56:19] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 11:31 run_atlas
[2025-06-03 16:56:19] -rw-r--r--. 1 boinc boinc       105 Jun  3 11:31 job.xml
[2025-06-03 16:56:19] -rw-r--r--. 2 boinc boinc 214708867 Jun  3 11:31 EVNT.45006593._000481.pool.root.1
[2025-06-03 16:56:19] -rw-r--r--. 2 boinc boinc     15093 Jun  3 11:31 start_atlas.sh
[2025-06-03 16:56:19] drwxrwx--x. 2 boinc boinc        68 Jun  3 11:31 shared
[2025-06-03 16:56:19] -rw-r--r--. 2 boinc boinc    508873 Jun  3 11:31 input.tar.gz
[2025-06-03 16:56:19] -rw-r--r--. 1 boinc boinc      6391 Jun  3 11:31 init_data.xml
[2025-06-03 16:56:19] -rw-r--r--. 1 boinc boinc         0 Jun  3 11:31 boinc_lockfile
[2025-06-03 16:56:19] -rw-r--r--. 1 boinc boinc      2524 Jun  3 11:31 pandaJob.out
[2025-06-03 16:56:19] -rw-------. 1 boinc boinc    985498 Jun  3 11:35 agis_schedconf.cvmfs.json
[2025-06-03 16:56:19] drwx------. 4 boinc boinc      4096 Jun  3 11:35 pilot3
[2025-06-03 16:56:19] -rw-------. 1 boinc boinc 180053247 Jun  3 15:22 HITS.45006595._012010.pool.root.1
[2025-06-03 16:56:19] -rw-r--r--. 1 boinc boinc       531 Jun  3 15:23 boinc_task_state.xml
[2025-06-03 16:56:19] -rw-------. 1 boinc boinc      1013 Jun  3 15:23 memory_monitor_summary.json
[2025-06-03 16:56:19] -rw-------. 1 boinc boinc   1603667 Jun  3 15:23 agis_ddmendpoints.agis.ALL.json
[2025-06-03 16:56:19] -rw-------. 1 boinc boinc    374549 Jun  3 15:23 log.45006595._012010.job.log.tgz.1
[2025-06-03 16:56:19] -rw-------. 1 boinc boinc        95 Jun  3 15:24 pilot_heartbeat.json
[2025-06-03 16:56:19] -rw-------. 1 boinc boinc      7693 Jun  3 15:25 heartbeat.json
[2025-06-03 16:56:19] -rw-------. 1 boinc boinc      4539 Jun  3 15:25 pilotlog.txt
[2025-06-03 16:56:19] -rw-------. 1 boinc boinc   1171182 Jun  3 15:25 log.45006595._012010.job.log.1
[2025-06-03 16:56:19] -rw-------. 1 boinc boinc       357 Jun  3 15:25 output.list
[2025-06-03 16:56:19] -rw-r--r--. 1 boinc boinc       620 Jun  3 15:25 runtime_log
[2025-06-03 16:56:19] -rw-------. 1 boinc boinc   1566720 Jun  3 15:25 result.tar.gz
[2025-06-03 16:56:19] -rw-r--r--. 1 boinc boinc      8659 Jun  3 15:25 runtime_log.err
[2025-06-03 16:56:19] -rw-------. 1 boinc boinc       656 Jun  3 15:25 2SpLDmGdRg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmejgKDmIP9Acm.diag
[2025-06-03 16:56:19] -rw-r--r--. 1 boinc boinc      8192 Jun  3 16:56 boinc_mmap_file
[2025-06-03 16:56:19] -rw-r--r--. 1 boinc boinc        28 Jun  3 16:56 wrapper_checkpoint.txt
[2025-06-03 16:56:19] -rw-r--r--. 1 boinc boinc     20507 Jun  3 16:56 stderr.txt
[2025-06-03 16:56:19] HITS file was successfully produced:
[2025-06-03 16:56:19] -rw-------. 1 boinc boinc 180053247 Jun  3 15:22 shared/HITS.pool.root.1
[2025-06-03 16:56:19]  *** Contents of shared directory: ***
[2025-06-03 16:56:19] total 387564
[2025-06-03 16:56:19] -rw-r--r--. 2 boinc boinc 214708867 Jun  3 11:31 ATLAS.root_0
[2025-06-03 16:56:19] -rw-r--r--. 2 boinc boinc     15093 Jun  3 11:31 start_atlas.sh
[2025-06-03 16:56:19] -rw-r--r--. 2 boinc boinc    508873 Jun  3 11:31 input.tar.gz
[2025-06-03 16:56:19] -rw-------. 1 boinc boinc 180053247 Jun  3 15:22 HITS.pool.root.1
[2025-06-03 16:56:19] -rw-------. 1 boinc boinc   1566720 Jun  3 15:25 result.tar.gz
16:56:21 (25099): run_atlas exited; CPU time 49797.712427
16:56:21 (25099): called boinc_finish(0)

</stderr_txt>
]]>

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