Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
09:42:38 (972576): wrapper (7.7.26015): starting
09:42:38 (972576): wrapper: running run_atlas (--nthreads 2)
[2025-06-03 09:42:38] Arguments: --nthreads 2
[2025-06-03 09:42:38] Threads: 2
[2025-06-03 09:42:38] Checking for CVMFS
[2025-06-03 09:42:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 09:42:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 09:42:38] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 09:42:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 09:42:38] 2.9.2.0 752711 881 54124 146734 3 56 30669167 36864001 0 130560 0 579514 99.990 220929 50428 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-06-03 09:42:38] CVMFS is ok
[2025-06-03 09:42:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 09:42:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 09:42:38] Further information can be found at the LHC@home message board.
[2025-06-03 09:42:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 09:42:38] Checking for apptainer binary...
[2025-06-03 09:42:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 09:42:38] Running /usr/bin/apptainer --version
[2025-06-03 09:42:38] apptainer version 1.3.6-6.1
[2025-06-03 09:42:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 09:42:38] thA365a
[2025-06-03 09:42:38] apptainer works
[2025-06-03 09:42:38] Set ATHENA_PROC_NUMBER=2
[2025-06-03 09:42:38] Set ATHENA_CORE_NUMBER=2
[2025-06-03 09:42:38] Starting ATLAS job with PandaID=6677401411
[2025-06-03 09:42:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
10:45:09 (990785): wrapper (7.7.26015): starting
10:45:09 (990785): wrapper: running run_atlas (--nthreads 2)
[2025-06-03 10:45:09] Arguments: --nthreads 2
[2025-06-03 10:45:09] Threads: 2
[2025-06-03 10:45:09] This job has been restarted, cleaning up previous attempt
[2025-06-03 10:45:09] Checking for CVMFS
[2025-06-03 10:45:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 10:45:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 10:45:11] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 10:45:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 10:45:11] 2.9.2.0 990981 0 29664 146735 3 1 30673229 36864000 0 130560 0 0 0.000 1290 3981 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-06-03 10:45:11] CVMFS is ok
[2025-06-03 10:45:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 10:45:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 10:45:11] Further information can be found at the LHC@home message board.
[2025-06-03 10:45:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 10:45:11] Checking for apptainer binary...
[2025-06-03 10:45:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 10:45:11] Running /usr/bin/apptainer --version
[2025-06-03 10:45:11] apptainer version 1.3.6-6.1
[2025-06-03 10:45:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 10:45:11] thA365a
[2025-06-03 10:45:11] apptainer works
[2025-06-03 10:45:11] Set ATHENA_PROC_NUMBER=2
[2025-06-03 10:45:11] Set ATHENA_CORE_NUMBER=2
[2025-06-03 10:45:11] Starting ATLAS job with PandaID=6677401411
[2025-06-03 10:45:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 12:35:35]  *** The last 200 lines of the pilot log: ***
[2025-06-03 12:35:35] 2025-06-03 10:35:13,588 | INFO     | monitor loop #511: job 0:6677401411 is in state 'finished'
[2025-06-03 12:35:35] 2025-06-03 10:35:13,588 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 12:35:35] 2025-06-03 10:35:16,091 | INFO     | monitor loop #512: job 0:6677401411 is in state 'finished'
[2025-06-03 12:35:35] 2025-06-03 10:35:16,091 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 12:35:35] 2025-06-03 10:35:16,350 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 12:35:35] 2025-06-03 10:35:16,350 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6677401411/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 12:35:35] 2025-06-03 10:35:16,350 | INFO     | extracted standard info from prmon json
[2025-06-03 12:35:35] 2025-06-03 10:35:16,350 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 12:35:35] 2025-06-03 10:35:16,350 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 12:35:35] 2025-06-03 10:35:16,351 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 12:35:35] 2025-06-03 10:35:16,351 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 12:35:35] 2025-06-03 10:35:16,352 | INFO     | fitting pss+swap vs Time
[2025-06-03 12:35:35] 2025-06-03 10:35:16,352 | INFO     | sum of square deviations: 390582207.0
[2025-06-03 12:35:35] 2025-06-03 10:35:16,352 | INFO     | sum of deviations: -5340143099.500001
[2025-06-03 12:35:35] 2025-06-03 10:35:16,352 | INFO     | mean x: 1748943619.5
[2025-06-03 12:35:35] 2025-06-03 10:35:16,352 | INFO     | mean y: 2369137.472222222
[2025-06-03 12:35:35] 2025-06-03 10:35:16,352 | INFO     | -- intersect: 23914388255.863552
[2025-06-03 12:35:35] 2025-06-03 10:35:16,352 | INFO     | intersect: 23914388255.863552
[2025-06-03 12:35:35] 2025-06-03 10:35:16,352 | INFO     | chi2: 1.5820200594418752
[2025-06-03 12:35:35] 2025-06-03 10:35:16,352 | INFO     | sum of square deviations: 338804492.0
[2025-06-03 12:35:35] 2025-06-03 10:35:16,353 | INFO     | sum of deviations: -4235728553.0000014
[2025-06-03 12:35:35] 2025-06-03 10:35:16,353 | INFO     | mean x: 1748943467.0
[2025-06-03 12:35:35] 2025-06-03 10:35:16,353 | INFO     | mean y: 2372392.786407767
[2025-06-03 12:35:35] 2025-06-03 10:35:16,353 | INFO     | -- intersect: 21867636743.398132
[2025-06-03 12:35:35] 2025-06-03 10:35:16,353 | INFO     | intersect: 21867636743.398132
[2025-06-03 12:35:35] 2025-06-03 10:35:16,353 | INFO     | chi2: 1.5842727943408286
[2025-06-03 12:35:35] 2025-06-03 10:35:16,353 | INFO     | current chi2=1.5842727943408286 (change=-0.14239610209165984 %)
[2025-06-03 12:35:35] 2025-06-03 10:35:16,353 | INFO     | right removable region: 102
[2025-06-03 12:35:35] 2025-06-03 10:35:16,353 | INFO     | sum of square deviations: 338804492.0
[2025-06-03 12:35:35] 2025-06-03 10:35:16,353 | INFO     | sum of deviations: -18949053908.000004
[2025-06-03 12:35:35] 2025-06-03 10:35:16,353 | INFO     | mean x: 1748943772.0
[2025-06-03 12:35:35] 2025-06-03 10:35:16,353 | INFO     | mean y: 2408097.8834951455
[2025-06-03 12:35:35] 2025-06-03 10:35:16,353 | INFO     | -- intersect: 97819381013.60526
[2025-06-03 12:35:35] 2025-06-03 10:35:16,353 | INFO     | intersect: 97819381013.60526
[2025-06-03 12:35:35] 2025-06-03 10:35:16,354 | INFO     | chi2: 0.06887755460945581
[2025-06-03 12:35:35] 2025-06-03 10:35:16,354 | INFO     | current chi2=0.06887755460945581 (change=95.64622747996285 %)
[2025-06-03 12:35:35] 2025-06-03 10:35:16,354 | INFO     | sum of square deviations: 291817564.5
[2025-06-03 12:35:35] 2025-06-03 10:35:16,354 | INFO     | sum of deviations: -16150746618.0
[2025-06-03 12:35:35] 2025-06-03 10:35:16,354 | INFO     | mean x: 1748943924.5
[2025-06-03 12:35:35] 2025-06-03 10:35:16,354 | INFO     | mean y: 2399094.224489796
[2025-06-03 12:35:35] 2025-06-03 10:35:16,354 | INFO     | -- intersect: 96798320964.41069
[2025-06-03 12:35:35] 2025-06-03 10:35:16,354 | INFO     | intersect: 96798320964.41069
[2025-06-03 12:35:35] 2025-06-03 10:35:16,354 | INFO     | chi2: 0.06624042889831751
[2025-06-03 12:35:35] 2025-06-03 10:35:16,354 | INFO     | current chi2=0.06624042889831751 (change=3.828715647776887 %)
[2025-06-03 12:35:35] 2025-06-03 10:35:16,354 | INFO     | left removable region: 20
[2025-06-03 12:35:35] 2025-06-03 10:35:16,354 | INFO     | sum of square deviations: 170944600.5
[2025-06-03 12:35:35] 2025-06-03 10:35:16,354 | INFO     | sum of deviations: -11339523172.5
[2025-06-03 12:35:35] 2025-06-03 10:35:16,355 | INFO     | mean x: 1748944046.5
[2025-06-03 12:35:35] 2025-06-03 10:35:16,355 | INFO     | mean y: 2392050.573170732
[2025-06-03 12:35:35] 2025-06-03 10:35:16,355 | INFO     | -- intersect: 116017706279.18881
[2025-06-03 12:35:35] 2025-06-03 10:35:16,355 | INFO     | intersect: 116017706279.18881
[2025-06-03 12:35:35] 2025-06-03 10:35:16,355 | INFO     | chi2: 0.05729142006024104
[2025-06-03 12:35:35] 2025-06-03 10:35:16,355 | INFO     | -- intersect: 116017706279.18881
[2025-06-03 12:35:35] 2025-06-03 10:35:16,355 | INFO     | current memory leak: -66.33 B/s (using 82 data points, chi2=0.06)
[2025-06-03 12:35:35] 2025-06-03 10:35:16,355 | INFO     | ..............................
[2025-06-03 12:35:35] 2025-06-03 10:35:16,355 | INFO     | . Timing measurements:
[2025-06-03 12:35:35] 2025-06-03 10:35:16,355 | INFO     | . get job = 0 s
[2025-06-03 12:35:35] 2025-06-03 10:35:16,355 | INFO     | . initial setup = 0 s
[2025-06-03 12:35:35] 2025-06-03 10:35:16,355 | INFO     | . payload setup = 9 s
[2025-06-03 12:35:35] 2025-06-03 10:35:16,355 | INFO     | . stage-in = 0 s
[2025-06-03 12:35:35] 2025-06-03 10:35:16,355 | INFO     | . payload execution = 6549 s
[2025-06-03 12:35:35] 2025-06-03 10:35:16,355 | INFO     | . stage-out = 0 s
[2025-06-03 12:35:35] 2025-06-03 10:35:16,355 | INFO     | . log creation = 0 s
[2025-06-03 12:35:35] 2025-06-03 10:35:16,355 | INFO     | ..............................
[2025-06-03 12:35:35] 2025-06-03 10:35:16,805 | INFO     | 
[2025-06-03 12:35:35] 2025-06-03 10:35:16,805 | INFO     | job summary report
[2025-06-03 12:35:35] 2025-06-03 10:35:16,805 | INFO     | --------------------------------------------------
[2025-06-03 12:35:35] 2025-06-03 10:35:16,805 | INFO     | PanDA job id: 6677401411
[2025-06-03 12:35:35] 2025-06-03 10:35:16,806 | INFO     | task id: 45006595
[2025-06-03 12:35:35] 2025-06-03 10:35:16,806 | INFO     | errors: (none)
[2025-06-03 12:35:35] 2025-06-03 10:35:16,806 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 12:35:35] 2025-06-03 10:35:16,806 | INFO     | pilot state: finished 
[2025-06-03 12:35:35] 2025-06-03 10:35:16,806 | INFO     | transexitcode: 0
[2025-06-03 12:35:35] 2025-06-03 10:35:16,806 | INFO     | exeerrorcode: 0
[2025-06-03 12:35:35] 2025-06-03 10:35:16,806 | INFO     | exeerrordiag: 
[2025-06-03 12:35:35] 2025-06-03 10:35:16,807 | INFO     | exitcode: 0
[2025-06-03 12:35:35] 2025-06-03 10:35:16,807 | INFO     | exitmsg: OK
[2025-06-03 12:35:35] 2025-06-03 10:35:16,807 | INFO     | cpuconsumptiontime: 12715 s
[2025-06-03 12:35:35] 2025-06-03 10:35:16,807 | INFO     | nevents: 400
[2025-06-03 12:35:35] 2025-06-03 10:35:16,807 | INFO     | neventsw: 0
[2025-06-03 12:35:35] 2025-06-03 10:35:16,807 | INFO     | pid: 1001427
[2025-06-03 12:35:35] 2025-06-03 10:35:16,807 | INFO     | pgrp: 1001427
[2025-06-03 12:35:35] 2025-06-03 10:35:16,808 | INFO     | corecount: 2
[2025-06-03 12:35:35] 2025-06-03 10:35:16,808 | INFO     | event service: False
[2025-06-03 12:35:35] 2025-06-03 10:35:16,808 | INFO     | sizes: {0: 2405185, 8: 2405391, 11: 2405419, 6562: 2432457, 6563: 2441459, 6573: 2441573}
[2025-06-03 12:35:35] 2025-06-03 10:35:16,808 | INFO     | --------------------------------------------------
[2025-06-03 12:35:35] 2025-06-03 10:35:16,808 | INFO     | 
[2025-06-03 12:35:35] 2025-06-03 10:35:16,808 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-06-03 12:35:35] 2025-06-03 10:35:16,821 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 12:35:35] 2025-06-03 10:35:16,821 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 12:35:35] 2025-06-03 10:35:16,821 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 12:35:35] 2025-06-03 10:35:16,821 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 12:35:35] 2025-06-03 10:35:16,821 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 12:35:35] 2025-06-03 10:35:16,821 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 12:35:35] 2025-06-03 10:35:16,821 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 12:35:35] 2025-06-03 10:35:16,821 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 12:35:35] 2025-06-03 10:35:16,822 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 12:35:35] 2025-06-03 10:35:16,822 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 12:35:35] 2025-06-03 10:35:16,822 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 12:35:35] 2025-06-03 10:35:16,822 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 12:35:35] 2025-06-03 10:35:16,822 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 12:35:35] 2025-06-03 10:35:16,822 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 12:35:35] 2025-06-03 10:35:16,822 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 12:35:35] 2025-06-03 10:35:16,822 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 12:35:35] 2025-06-03 10:35:16,822 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 12:35:35] 2025-06-03 10:35:16,822 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 12:35:35] 2025-06-03 10:35:16,822 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 12:35:35] 2025-06-03 10:35:16,822 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 12:35:35] 2025-06-03 10:35:16,822 | INFO     | job 6677401411 has completed (purged errors)
[2025-06-03 12:35:35] 2025-06-03 10:35:16,822 | INFO     | overall cleanup function is called
[2025-06-03 12:35:35] 2025-06-03 10:35:17,828 | INFO     | --- collectZombieJob: --- 10, [1001427]
[2025-06-03 12:35:35] 2025-06-03 10:35:17,828 | INFO     | zombie collector waiting for pid 1001427
[2025-06-03 12:35:35] 2025-06-03 10:35:17,829 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 12:35:35] 2025-06-03 10:35:17,829 | INFO     | collected zombie processes
[2025-06-03 12:35:35] 2025-06-03 10:35:17,829 | INFO     | will attempt to kill all subprocesses of pid=1001427
[2025-06-03 12:35:35] 2025-06-03 10:35:17,863 | INFO     | process IDs to be killed: [1001427] (in reverse order)
[2025-06-03 12:35:35] 2025-06-03 10:35:17,885 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 12:35:35] 2025-06-03 10:35:17,886 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 12:35:35] 2025-06-03 10:35:17,889 | INFO     | did not find any defunct processes belonging to 1001427
[2025-06-03 12:35:35] 2025-06-03 10:35:17,890 | INFO     | did not find any defunct processes belonging to 1001427
[2025-06-03 12:35:35] 2025-06-03 10:35:17,891 | INFO     | ready for new job
[2025-06-03 12:35:35] 2025-06-03 10:35:17,891 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 12:35:35] 2025-06-03 10:35:17,891 | INFO     | **************************************
[2025-06-03 12:35:35] 2025-06-03 10:35:17,891 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 12:35:35] 2025-06-03 10:35:17,891 | INFO     | **************************************
[2025-06-03 12:35:35] 2025-06-03 10:35:17,891 | INFO     | 
[2025-06-03 12:35:35] 2025-06-03 10:35:17,891 | INFO     | architecture information:
[2025-06-03 12:35:35] 2025-06-03 10:35:17,892 | INFO     | executing command: cat /etc/os-release
[2025-06-03 12:35:35] 2025-06-03 10:35:17,901 | INFO     | cat /etc/os-release:
[2025-06-03 12:35:35] NAME="CentOS Linux"
[2025-06-03 12:35:35] VERSION="7 (Core)"
[2025-06-03 12:35:35] ID="centos"
[2025-06-03 12:35:35] ID_LIKE="rhel fedora"
[2025-06-03 12:35:35] VERSION_ID="7"
[2025-06-03 12:35:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 12:35:35] ANSI_COLOR="0;31"
[2025-06-03 12:35:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 12:35:35] HOME_URL="https://www.centos.org/"
[2025-06-03 12:35:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 12:35:35] 
[2025-06-03 12:35:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 12:35:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 12:35:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 12:35:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 12:35:35] 
[2025-06-03 12:35:35] 2025-06-03 10:35:17,901 | INFO     | **************************************
[2025-06-03 12:35:35] 2025-06-03 10:35:18,404 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-03 12:35:35] 2025-06-03 10:35:18,417 | INFO     | sufficient remaining disk space (489045360640 B)
[2025-06-03 12:35:35] 2025-06-03 10:35:18,417 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 12:35:35] 2025-06-03 10:35:18,417 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 12:35:35] 2025-06-03 10:35:18,417 | INFO     | update_server=False
[2025-06-03 12:35:35] 2025-06-03 10:35:18,417 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 12:35:35] 2025-06-03 10:35:18,417 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 12:35:35] 2025-06-03 10:35:18,417 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 12:35:35] 2025-06-03 10:35:18,417 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 12:35:35] 2025-06-03 10:35:18,417 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 12:35:35] 2025-06-03 10:35:18,438 | INFO     | all data control threads have been joined
[2025-06-03 12:35:35] 2025-06-03 10:35:18,594 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-03 12:35:35] 2025-06-03 10:35:18,594 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-03 12:35:35] 2025-06-03 10:35:18,594 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 12:35:35] 2025-06-03 10:35:18,595 | INFO     | will abort loop
[2025-06-03 12:35:35] 2025-06-03 10:35:19,056 | INFO     | all job control threads have been joined
[2025-06-03 12:35:35] 2025-06-03 10:35:19,113 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 12:35:35] 2025-06-03 10:35:19,143 | INFO     | all payload control threads have been joined
[2025-06-03 12:35:35] 2025-06-03 10:35:19,422 | INFO     | [job] retrieve thread has finished
[2025-06-03 12:35:35] 2025-06-03 10:35:19,441 | INFO     | [data] copytool_in thread has finished
[2025-06-03 12:35:35] 2025-06-03 10:35:19,444 | INFO     | [data] control thread has finished
[2025-06-03 12:35:35] 2025-06-03 10:35:19,600 | INFO     | [job] job monitor thread has finished
[2025-06-03 12:35:35] 2025-06-03 10:35:19,628 | INFO     | [payload] validate_post thread has finished
[2025-06-03 12:35:35] 2025-06-03 10:35:19,886 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 12:35:35] 2025-06-03 10:35:20,062 | INFO     | [job] control thread has finished
[2025-06-03 12:35:35] 2025-06-03 10:35:20,148 | INFO     | [payload] control thread has finished
[2025-06-03 12:35:35] 2025-06-03 10:35:20,609 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 12:35:35] 2025-06-03 10:35:20,629 | INFO     | [payload] failed_post thread has finished
[2025-06-03 12:35:35] 2025-06-03 10:35:20,645 | INFO     | [job] validate thread has finished
[2025-06-03 12:35:35] 2025-06-03 10:35:20,826 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 12:35:35] 2025-06-03 10:35:21,120 | INFO     | [data] copytool_out thread has finished
[2025-06-03 12:35:35] 2025-06-03 10:35:21,138 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 12:35:35] 2025-06-03 10:35:21,404 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 12:35:35] 2025-06-03 10:35:22,410 | INFO     | [job] queue monitor thread has finished
[2025-06-03 12:35:35] 2025-06-03 10:35:25,142 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 12:35:35] 2025-06-03 10:35:28,784 | INFO     | job.realtimelogging is not enabled
[2025-06-03 12:35:35] 2025-06-03 10:35:29,790 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 12:35:35] 2025-06-03 10:35:30,223 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140166582089536)>', '<ExcThread(monitor, started 140165578221312)>']
[2025-06-03 12:35:35] 2025-06-03 10:35:30,480 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 12:35:35] 2025-06-03 10:35:30,481 | INFO     | [monitor] control thread has ended
[2025-06-03 12:35:35] 2025-06-03 10:35:35,249 | INFO     | all workflow threads have been joined
[2025-06-03 12:35:35] 2025-06-03 10:35:35,249 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 12:35:35] 2025-06-03 10:35:35,250 | INFO     | traces error code: 0
[2025-06-03 12:35:35] 2025-06-03 10:35:35,250 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 12:35:35] 2025-06-03 10:35:35,294 [wrapper] ==== pilot stdout END ====
[2025-06-03 12:35:35] 2025-06-03 10:35:35,296 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 12:35:35] 2025-06-03 10:35:35,299 [wrapper] pilotpid: 994958
[2025-06-03 12:35:35] 2025-06-03 10:35:35,301 [wrapper] Pilot exit status: 0
[2025-06-03 12:35:35] 2025-06-03 10:35:35,307 [wrapper] pandaids: 6677401411 6677401411
[2025-06-03 12:35:35] 2025-06-03 10:35:35,320 [wrapper] cleanup supervisor_pilot 1015862 994959
[2025-06-03 12:35:35] 2025-06-03 10:35:35,323 [wrapper] Test setup, not cleaning
[2025-06-03 12:35:35] 2025-06-03 10:35:35,325 [wrapper] apfmon messages muted
[2025-06-03 12:35:35] 2025-06-03 10:35:35,327 [wrapper] ==== wrapper stdout END ====
[2025-06-03 12:35:35] 2025-06-03 10:35:35,329 [wrapper] ==== wrapper stderr END ====
[2025-06-03 12:35:35]  *** Error codes and diagnostics ***
[2025-06-03 12:35:35]     "exeErrorCode": 0,
[2025-06-03 12:35:35]     "exeErrorDiag": "",
[2025-06-03 12:35:35]     "pilotErrorCode": 0,
[2025-06-03 12:35:35]     "pilotErrorDiag": "",
[2025-06-03 12:35:35]  *** Listing of results directory ***
[2025-06-03 12:35:35] total 599556
[2025-06-03 12:35:35] drwx------ 4 boinc boinc      4096 Apr  3 10:00 pilot3
[2025-06-03 12:35:35] -rw-r--r-- 1 boinc boinc    495897 Jun  2 23:10 pilot3.tar.gz
[2025-06-03 12:35:35] -rw-r--r-- 1 boinc boinc      5111 Jun  2 23:12 queuedata.json
[2025-06-03 12:35:35] -rwx------ 1 boinc boinc     37140 Jun  2 23:13 runpilot2-wrapper.sh
[2025-06-03 12:35:35] -rw-r--r-- 1 boinc boinc       100 Jun  3 09:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 12:35:35] -rwxr-xr-x 1 boinc boinc      7986 Jun  3 09:42 run_atlas
[2025-06-03 12:35:35] -rw-r--r-- 1 boinc boinc       105 Jun  3 09:42 job.xml
[2025-06-03 12:35:35] -rw-r--r-- 3 boinc boinc 215346701 Jun  3 09:42 EVNT.45006593._000483.pool.root.1
[2025-06-03 12:35:35] -rw-r--r-- 3 boinc boinc 215346701 Jun  3 09:42 ATLAS.root_0
[2025-06-03 12:35:35] drwxrwx--x 2 boinc boinc      4096 Jun  3 09:42 shared
[2025-06-03 12:35:35] -rw-r--r-- 2 boinc boinc    508876 Jun  3 09:42 input.tar.gz
[2025-06-03 12:35:35] -rw-r--r-- 2 boinc boinc     15093 Jun  3 09:42 start_atlas.sh
[2025-06-03 12:35:35] -rw-r--r-- 1 boinc boinc         0 Jun  3 09:42 boinc_lockfile
[2025-06-03 12:35:35] -rw------- 1 boinc boinc   1603667 Jun  3 09:42 agis_ddmendpoints.agis.ALL.json
[2025-06-03 12:35:35] -rw-r--r-- 1 boinc boinc      6695 Jun  3 10:45 init_data.xml
[2025-06-03 12:35:35] -rw-r--r-- 1 boinc boinc      2524 Jun  3 10:45 pandaJob.out
[2025-06-03 12:35:35] -rw------- 1 boinc boinc    985498 Jun  3 10:45 agis_schedconf.cvmfs.json
[2025-06-03 12:35:35] -rw------- 1 boinc boinc 177713524 Jun  3 12:34 HITS.45006595._012065.pool.root.1
[2025-06-03 12:35:35] -rw------- 1 boinc boinc        97 Jun  3 12:34 pilot_heartbeat.json
[2025-06-03 12:35:35] -rw-r--r-- 1 boinc boinc       529 Jun  3 12:34 boinc_task_state.xml
[2025-06-03 12:35:35] -rw------- 1 boinc boinc      1024 Jun  3 12:35 memory_monitor_summary.json
[2025-06-03 12:35:35] -rw------- 1 boinc boinc    229216 Jun  3 12:35 log.45006595._012065.job.log.tgz.1
[2025-06-03 12:35:35] -rw------- 1 boinc boinc      7651 Jun  3 12:35 heartbeat.json
[2025-06-03 12:35:35] -rw-r--r-- 1 boinc boinc      8192 Jun  3 12:35 boinc_mmap_file
[2025-06-03 12:35:35] -rw-r--r-- 1 boinc boinc        27 Jun  3 12:35 wrapper_checkpoint.txt
[2025-06-03 12:35:35] -rw------- 1 boinc boinc      4738 Jun  3 12:35 pilotlog.txt
[2025-06-03 12:35:35] -rw------- 1 boinc boinc    626177 Jun  3 12:35 log.45006595._012065.job.log.1
[2025-06-03 12:35:35] -rw------- 1 boinc boinc       357 Jun  3 12:35 output.list
[2025-06-03 12:35:35] -rw-r--r-- 1 boinc boinc       620 Jun  3 12:35 runtime_log
[2025-06-03 12:35:35] -rw------- 1 boinc boinc    870400 Jun  3 12:35 result.tar.gz
[2025-06-03 12:35:35] -rw-r--r-- 1 boinc boinc      8823 Jun  3 12:35 runtime_log.err
[2025-06-03 12:35:35] -rw------- 1 boinc boinc       785 Jun  3 12:35 8TjKDmFeRg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOkgKDmy36Cnm.diag
[2025-06-03 12:35:35] -rw-r--r-- 1 boinc boinc     23124 Jun  3 12:35 stderr.txt
[2025-06-03 12:35:35] HITS file was successfully produced:
[2025-06-03 12:35:35] -rw------- 1 boinc boinc 177713524 Jun  3 12:34 shared/HITS.pool.root.1
[2025-06-03 12:35:35]  *** Contents of shared directory: ***
[2025-06-03 12:35:35] total 385224
[2025-06-03 12:35:35] -rw-r--r-- 3 boinc boinc 215346701 Jun  3 09:42 ATLAS.root_0
[2025-06-03 12:35:35] -rw-r--r-- 2 boinc boinc    508876 Jun  3 09:42 input.tar.gz
[2025-06-03 12:35:35] -rw-r--r-- 2 boinc boinc     15093 Jun  3 09:42 start_atlas.sh
[2025-06-03 12:35:35] -rw------- 1 boinc boinc 177713524 Jun  3 12:34 HITS.pool.root.1
[2025-06-03 12:35:35] -rw------- 1 boinc boinc    870400 Jun  3 12:35 result.tar.gz
12:35:36 (990785): run_atlas exited; CPU time 12741.516931
12:35:36 (990785): called boinc_finish(0)

</stderr_txt>
]]>

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