Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:31:12 (28924): wrapper (7.7.26015): starting
12:31:12 (28924): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 12:31:12] Arguments: --nthreads 8
[2025-06-03 12:31:12] Threads: 8
[2025-06-03 12:31:12] Checking for CVMFS
[2025-06-03 12:31:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 12:31:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 12:31:12] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 12:31:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 12:31:13] 2.11.2.0 1205 31639 90568 146737 3 114 16826600 25165824 4098 130560 0 15898222 99.799 17873890 2166 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 12:31:13] CVMFS is ok
[2025-06-03 12:31:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 12:31:13] Checking for apptainer binary...
[2025-06-03 12:31:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 12:31:13] Running /usr/bin/apptainer --version
[2025-06-03 12:31:13] apptainer version 1.3.2-1.el7
[2025-06-03 12:31:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 12:31:14] cg-vwn325.simple-grid.lan
[2025-06-03 12:31:14] apptainer works
[2025-06-03 12:31:14] Set ATHENA_PROC_NUMBER=8
[2025-06-03 12:31:14] Set ATHENA_CORE_NUMBER=8
[2025-06-03 12:31:14] Starting ATLAS job with PandaID=6677392449
[2025-06-03 12:31:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 17:47:01]  *** The last 200 lines of the pilot log: ***
[2025-06-03 17:47:01] 2025-06-03 14:21:45,547 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6677392449/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 17:47:01] 2025-06-03 14:21:45,548 | INFO     | extracted standard info from prmon json
[2025-06-03 17:47:01] 2025-06-03 14:21:45,548 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 17:47:01] 2025-06-03 14:21:45,548 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 17:47:01] 2025-06-03 14:21:45,549 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 17:47:01] 2025-06-03 14:21:45,549 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 17:47:01] 2025-06-03 14:21:45,554 | INFO     | fitting pss+swap vs Time
[2025-06-03 17:47:01] 2025-06-03 14:21:45,555 | INFO     | sum of square deviations: 3485088600.0
[2025-06-03 17:47:01] 2025-06-03 14:21:45,557 | INFO     | sum of deviations: -34187036938.499992
[2025-06-03 17:47:01] 2025-06-03 14:21:45,557 | INFO     | mean x: 1748953554.5
[2025-06-03 17:47:01] 2025-06-03 14:21:45,557 | INFO     | mean y: 2513320.0223214286
[2025-06-03 17:47:01] 2025-06-03 14:21:45,557 | INFO     | -- intersect: 17158903482.21572
[2025-06-03 17:47:01] 2025-06-03 14:21:45,557 | INFO     | intersect: 17158903482.21572
[2025-06-03 17:47:01] 2025-06-03 14:21:45,558 | INFO     | chi2: 2.7486895782029728
[2025-06-03 17:47:01] 2025-06-03 14:21:45,558 | INFO     | sum of square deviations: 3256879670.0
[2025-06-03 17:47:01] 2025-06-03 14:21:45,560 | INFO     | sum of deviations: -18405996527.999985
[2025-06-03 17:47:01] 2025-06-03 14:21:45,560 | INFO     | mean x: 1748953402.0
[2025-06-03 17:47:01] 2025-06-03 14:21:45,560 | INFO     | mean y: 2523687.1963470317
[2025-06-03 17:47:01] 2025-06-03 14:21:45,560 | INFO     | -- intersect: 9886594794.080612
[2025-06-03 17:47:01] 2025-06-03 14:21:45,560 | INFO     | intersect: 9886594794.080612
[2025-06-03 17:47:01] 2025-06-03 14:21:45,561 | INFO     | chi2: 1.9857947402668326
[2025-06-03 17:47:01] 2025-06-03 14:21:45,561 | INFO     | current chi2=1.9857947402668326 (change=27.754856131659018 %)
[2025-06-03 17:47:01] 2025-06-03 14:21:45,568 | INFO     | sum of square deviations: 3038856977.5
[2025-06-03 17:47:01] 2025-06-03 14:21:45,570 | INFO     | sum of deviations: -17622991713.500004
[2025-06-03 17:47:01] 2025-06-03 14:21:45,570 | INFO     | mean x: 1748953249.5
[2025-06-03 17:47:01] 2025-06-03 14:21:45,570 | INFO     | mean y: 2524235.079439252
[2025-06-03 17:47:01] 2025-06-03 14:21:45,570 | INFO     | -- intersect: 10145084036.822332
[2025-06-03 17:47:01] 2025-06-03 14:21:45,570 | INFO     | intersect: 10145084036.822332
[2025-06-03 17:47:01] 2025-06-03 14:21:45,571 | INFO     | chi2: 1.9847047820848467
[2025-06-03 17:47:01] 2025-06-03 14:21:45,571 | INFO     | current chi2=1.9847047820848467 (change=0.05488775651804851 %)
[2025-06-03 17:47:01] 2025-06-03 14:21:45,571 | INFO     | right removable region: 213
[2025-06-03 17:47:01] 2025-06-03 14:21:45,571 | INFO     | sum of square deviations: 3256879670.0
[2025-06-03 17:47:01] 2025-06-03 14:21:45,573 | INFO     | sum of deviations: -73067080634.0
[2025-06-03 17:47:01] 2025-06-03 14:21:45,573 | INFO     | mean x: 1748953707.0
[2025-06-03 17:47:01] 2025-06-03 14:21:45,574 | INFO     | mean y: 2539066.397260274
[2025-06-03 17:47:01] 2025-06-03 14:21:45,574 | INFO     | -- intersect: 39239770552.60142
[2025-06-03 17:47:01] 2025-06-03 14:21:45,574 | INFO     | intersect: 39239770552.60142
[2025-06-03 17:47:01] 2025-06-03 14:21:45,574 | INFO     | chi2: 1.0041083683739
[2025-06-03 17:47:01] 2025-06-03 14:21:45,574 | INFO     | current chi2=1.0041083683739 (change=63.46956104696398 %)
[2025-06-03 17:47:01] 2025-06-03 14:21:45,575 | INFO     | sum of square deviations: 3038856977.5
[2025-06-03 17:47:01] 2025-06-03 14:21:45,576 | INFO     | sum of deviations: -69500805639.5
[2025-06-03 17:47:01] 2025-06-03 14:21:45,576 | INFO     | mean x: 1748953859.5
[2025-06-03 17:47:01] 2025-06-03 14:21:45,576 | INFO     | mean y: 2536544.0327102803
[2025-06-03 17:47:01] 2025-06-03 14:21:45,577 | INFO     | -- intersect: 40002346723.17526
[2025-06-03 17:47:01] 2025-06-03 14:21:45,577 | INFO     | intersect: 40002346723.17526
[2025-06-03 17:47:01] 2025-06-03 14:21:45,577 | INFO     | chi2: 0.9943166606814533
[2025-06-03 17:47:01] 2025-06-03 14:21:45,577 | INFO     | current chi2=0.9943166606814533 (change=0.9751644345225305 %)
[2025-06-03 17:47:01] 2025-06-03 14:21:45,577 | INFO     | left removable region: 20
[2025-06-03 17:47:01] 2025-06-03 14:21:45,578 | INFO     | sum of square deviations: 2229146912.0
[2025-06-03 17:47:01] 2025-06-03 14:21:45,579 | INFO     | sum of deviations: -39355050543.000015
[2025-06-03 17:47:01] 2025-06-03 14:21:45,579 | INFO     | mean x: 1748953829.0
[2025-06-03 17:47:01] 2025-06-03 14:21:45,579 | INFO     | mean y: 2538922.212435233
[2025-06-03 17:47:01] 2025-06-03 14:21:45,579 | INFO     | -- intersect: 30879896519.031254
[2025-06-03 17:47:01] 2025-06-03 14:21:45,579 | INFO     | intersect: 30879896519.031254
[2025-06-03 17:47:01] 2025-06-03 14:21:45,580 | INFO     | chi2: 0.18579709145540713
[2025-06-03 17:47:01] 2025-06-03 14:21:45,580 | INFO     | -- intersect: 30879896519.031254
[2025-06-03 17:47:01] 2025-06-03 14:21:45,580 | INFO     | current memory leak: -17.65 B/s (using 193 data points, chi2=0.19)
[2025-06-03 17:47:01] 2025-06-03 14:21:45,581 | INFO     | ..............................
[2025-06-03 17:47:01] 2025-06-03 14:21:45,581 | INFO     | . Timing measurements:
[2025-06-03 17:47:01] 2025-06-03 14:21:45,581 | INFO     | . get job = 0 s
[2025-06-03 17:47:01] 2025-06-03 14:21:45,581 | INFO     | . initial setup = 3 s
[2025-06-03 17:47:01] 2025-06-03 14:21:45,581 | INFO     | . payload setup = 13 s
[2025-06-03 17:47:01] 2025-06-03 14:21:45,581 | INFO     | . stage-in = 0 s
[2025-06-03 17:47:01] 2025-06-03 14:21:45,581 | INFO     | . payload execution = 13671 s
[2025-06-03 17:47:01] 2025-06-03 14:21:45,582 | INFO     | . stage-out = 3 s
[2025-06-03 17:47:01] 2025-06-03 14:21:45,582 | INFO     | . log creation = 1 s
[2025-06-03 17:47:01] 2025-06-03 14:21:45,582 | INFO     | ..............................
[2025-06-03 17:47:01] 2025-06-03 14:21:45,726 | INFO     | 
[2025-06-03 17:47:01] 2025-06-03 14:21:45,727 | INFO     | job summary report
[2025-06-03 17:47:01] 2025-06-03 14:21:45,727 | INFO     | --------------------------------------------------
[2025-06-03 17:47:01] 2025-06-03 14:21:45,727 | INFO     | PanDA job id: 6677392449
[2025-06-03 17:47:01] 2025-06-03 14:21:45,727 | INFO     | task id: 45006595
[2025-06-03 17:47:01] 2025-06-03 14:21:45,727 | INFO     | errors: (none)
[2025-06-03 17:47:01] 2025-06-03 14:21:45,727 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 17:47:01] 2025-06-03 14:21:45,727 | INFO     | pilot state: finished 
[2025-06-03 17:47:01] 2025-06-03 14:21:45,727 | INFO     | transexitcode: 0
[2025-06-03 17:47:01] 2025-06-03 14:21:45,727 | INFO     | exeerrorcode: 0
[2025-06-03 17:47:01] 2025-06-03 14:21:45,727 | INFO     | exeerrordiag: 
[2025-06-03 17:47:01] 2025-06-03 14:21:45,728 | INFO     | exitcode: 0
[2025-06-03 17:47:01] 2025-06-03 14:21:45,728 | INFO     | exitmsg: OK
[2025-06-03 17:47:01] 2025-06-03 14:21:45,728 | INFO     | cpuconsumptiontime: 52450 s
[2025-06-03 17:47:01] 2025-06-03 14:21:45,728 | INFO     | nevents: 400
[2025-06-03 17:47:01] 2025-06-03 14:21:45,728 | INFO     | neventsw: 0
[2025-06-03 17:47:01] 2025-06-03 14:21:45,728 | INFO     | pid: 8777
[2025-06-03 17:47:01] 2025-06-03 14:21:45,728 | INFO     | pgrp: 8777
[2025-06-03 17:47:01] 2025-06-03 14:21:45,728 | INFO     | corecount: 8
[2025-06-03 17:47:01] 2025-06-03 14:21:45,728 | INFO     | event service: False
[2025-06-03 17:47:01] 2025-06-03 14:21:45,728 | INFO     | sizes: {0: 2405007, 1: 2405206, 9: 2405412, 12: 2405440, 13688: 2435057, 13689: 2435056, 13693: 2444183, 13695: 2444239, 13788: 2444409}
[2025-06-03 17:47:01] 2025-06-03 14:21:45,728 | INFO     | --------------------------------------------------
[2025-06-03 17:47:01] 2025-06-03 14:21:45,728 | INFO     | 
[2025-06-03 17:47:01] 2025-06-03 14:21:45,729 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-06-03 17:47:01] 2025-06-03 14:21:46,301 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 17:47:01] 2025-06-03 14:21:46,301 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 17:47:01] 2025-06-03 14:21:46,301 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 17:47:01] 2025-06-03 14:21:46,301 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 17:47:01] 2025-06-03 14:21:46,301 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 17:47:01] 2025-06-03 14:21:46,302 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 17:47:01] 2025-06-03 14:21:46,302 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 17:47:01] 2025-06-03 14:21:46,302 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 17:47:01] 2025-06-03 14:21:46,302 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 17:47:01] 2025-06-03 14:21:46,302 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 17:47:01] 2025-06-03 14:21:46,302 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 17:47:01] 2025-06-03 14:21:46,302 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 17:47:01] 2025-06-03 14:21:46,302 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 17:47:01] 2025-06-03 14:21:46,303 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 17:47:01] 2025-06-03 14:21:46,303 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 17:47:01] 2025-06-03 14:21:46,303 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 17:47:01] 2025-06-03 14:21:46,303 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 17:47:01] 2025-06-03 14:21:46,303 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 17:47:01] 2025-06-03 14:21:46,303 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 17:47:01] 2025-06-03 14:21:46,303 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 17:47:01] 2025-06-03 14:21:46,303 | INFO     | job 6677392449 has completed (purged errors)
[2025-06-03 17:47:01] 2025-06-03 14:21:46,304 | INFO     | overall cleanup function is called
[2025-06-03 17:47:01] 2025-06-03 14:21:47,313 | INFO     | --- collectZombieJob: --- 10, [8777]
[2025-06-03 17:47:01] 2025-06-03 14:21:47,313 | INFO     | zombie collector waiting for pid 8777
[2025-06-03 17:47:01] 2025-06-03 14:21:47,314 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 17:47:01] 2025-06-03 14:21:47,314 | INFO     | collected zombie processes
[2025-06-03 17:47:01] 2025-06-03 14:21:47,314 | INFO     | will attempt to kill all subprocesses of pid=8777
[2025-06-03 17:47:01] 2025-06-03 14:21:47,433 | INFO     | process IDs to be killed: [8777] (in reverse order)
[2025-06-03 17:47:01] 2025-06-03 14:21:48,246 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 17:47:01] 2025-06-03 14:21:48,246 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 17:47:01] 2025-06-03 14:21:48,250 | INFO     | did not find any defunct processes belonging to 8777
[2025-06-03 17:47:01] 2025-06-03 14:21:48,253 | INFO     | did not find any defunct processes belonging to 8777
[2025-06-03 17:47:01] 2025-06-03 14:21:48,254 | INFO     | ready for new job
[2025-06-03 17:47:01] 2025-06-03 14:21:48,254 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 17:47:01] 2025-06-03 14:21:48,256 | INFO     | **************************************
[2025-06-03 17:47:01] 2025-06-03 14:21:48,256 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 17:47:01] 2025-06-03 14:21:48,256 | INFO     | **************************************
[2025-06-03 17:47:01] 2025-06-03 14:21:48,256 | INFO     | 
[2025-06-03 17:47:01] 2025-06-03 14:21:48,257 | INFO     | pilot is running in a VM
[2025-06-03 17:47:01] 2025-06-03 14:21:48,257 | INFO     | architecture information:
[2025-06-03 17:47:01] 2025-06-03 14:21:48,267 | INFO     | executing command: cat /etc/os-release
[2025-06-03 17:47:01] 2025-06-03 14:21:48,517 | INFO     | cat /etc/os-release:
[2025-06-03 17:47:01] NAME="CentOS Linux"
[2025-06-03 17:47:01] VERSION="7 (Core)"
[2025-06-03 17:47:01] ID="centos"
[2025-06-03 17:47:01] ID_LIKE="rhel fedora"
[2025-06-03 17:47:01] VERSION_ID="7"
[2025-06-03 17:47:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 17:47:01] ANSI_COLOR="0;31"
[2025-06-03 17:47:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 17:47:01] HOME_URL="https://www.centos.org/"
[2025-06-03 17:47:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 17:47:01] 
[2025-06-03 17:47:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 17:47:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 17:47:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 17:47:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 17:47:01] 
[2025-06-03 17:47:01] 2025-06-03 14:21:48,517 | INFO     | **************************************
[2025-06-03 17:47:01] 2025-06-03 14:21:49,020 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-06-03 17:47:01] 2025-06-03 14:21:49,153 | INFO     | sufficient remaining disk space (496726179840 B)
[2025-06-03 17:47:01] 2025-06-03 14:21:49,154 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 17:47:01] 2025-06-03 14:21:49,154 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 17:47:01] 2025-06-03 14:21:49,154 | INFO     | update_server=False
[2025-06-03 17:47:01] 2025-06-03 14:21:49,154 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 17:47:01] 2025-06-03 14:21:49,154 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 17:47:01] 2025-06-03 14:21:49,155 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 17:47:01] 2025-06-03 14:21:49,156 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 17:47:01] 2025-06-03 14:21:49,156 | INFO     | aborting loop
[2025-06-03 17:47:01] 2025-06-03 14:21:49,288 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 17:47:01] 2025-06-03 14:21:49,289 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 17:47:01] 2025-06-03 14:21:49,289 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 17:47:01] 2025-06-03 14:21:49,468 | INFO     | all payload control threads have been joined
[2025-06-03 17:47:01] 2025-06-03 14:21:49,670 | INFO     | all data control threads have been joined
[2025-06-03 17:47:01] 2025-06-03 14:21:49,839 | INFO     | all job control threads have been joined
[2025-06-03 17:47:01] 2025-06-03 14:21:50,160 | INFO     | [job] retrieve thread has finished
[2025-06-03 17:47:01] 2025-06-03 14:21:50,161 | INFO     | [job] job monitor thread has finished
[2025-06-03 17:47:01] 2025-06-03 14:21:50,322 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 17:47:01] 2025-06-03 14:21:50,374 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 17:47:01] 2025-06-03 14:21:50,418 | INFO     | [payload] validate_post thread has finished
[2025-06-03 17:47:01] 2025-06-03 14:21:50,474 | INFO     | [payload] control thread has finished
[2025-06-03 17:47:01] 2025-06-03 14:21:50,604 | INFO     | [data] copytool_in thread has finished
[2025-06-03 17:47:01] 2025-06-03 14:21:50,676 | INFO     | [data] control thread has finished
[2025-06-03 17:47:01] 2025-06-03 14:21:50,718 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 17:47:01] 2025-06-03 14:21:50,744 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 17:47:01] 2025-06-03 14:21:50,845 | INFO     | [job] control thread has finished
[2025-06-03 17:47:01] 2025-06-03 14:21:51,057 | INFO     | [payload] failed_post thread has finished
[2025-06-03 17:47:01] 2025-06-03 14:21:51,141 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 17:47:01] 2025-06-03 14:21:51,161 | INFO     | [data] copytool_out thread has finished
[2025-06-03 17:47:01] 2025-06-03 14:21:51,169 | INFO     | [job] validate thread has finished
[2025-06-03 17:47:01] 2025-06-03 14:21:51,750 | INFO     | [job] queue monitor thread has finished
[2025-06-03 17:47:01] 2025-06-03 14:21:53,164 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 17:47:01] 2025-06-03 14:21:53,795 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139777546590016)>', '<ExcThread(monitor, started 139776866895616)>']
[2025-06-03 17:47:01] 2025-06-03 14:21:54,318 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 17:47:01] 2025-06-03 14:21:54,318 | INFO     | [monitor] control thread has ended
[2025-06-03 17:47:01] 2025-06-03 14:21:58,821 | INFO     | all workflow threads have been joined
[2025-06-03 17:47:01] 2025-06-03 14:21:58,821 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 17:47:01] 2025-06-03 14:21:58,822 | INFO     | traces error code: 0
[2025-06-03 17:47:01] 2025-06-03 14:21:58,822 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 17:47:01] 2025-06-03 14:21:59,118 [wrapper] ==== pilot stdout END ====
[2025-06-03 17:47:01] 2025-06-03 14:21:59,218 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 17:47:01] 2025-06-03 14:21:59,279 [wrapper] pilotpid: 1080
[2025-06-03 17:47:01] 2025-06-03 14:21:59,362 [wrapper] Pilot exit status: 0
[2025-06-03 17:47:01] 2025-06-03 14:21:59,838 [wrapper] pandaids: 6677392449
[2025-06-03 17:47:01] 2025-06-03 14:22:00,779 [wrapper] cleanup supervisor_pilot 10004 1081
[2025-06-03 17:47:01] 2025-06-03 14:22:00,868 [wrapper] Test setup, not cleaning
[2025-06-03 17:47:01] 2025-06-03 14:22:00,914 [wrapper] apfmon messages muted
[2025-06-03 17:47:01] 2025-06-03 14:22:00,996 [wrapper] ==== wrapper stdout END ====
[2025-06-03 17:47:01] 2025-06-03 14:22:01,075 [wrapper] ==== wrapper stderr END ====
[2025-06-03 17:47:01]  *** Error codes and diagnostics ***
[2025-06-03 17:47:01]     "exeErrorCode": 0,
[2025-06-03 17:47:01]     "exeErrorDiag": "",
[2025-06-03 17:47:01]     "pilotErrorCode": 0,
[2025-06-03 17:47:01]     "pilotErrorDiag": "",
[2025-06-03 17:47:01]  *** Listing of results directory ***
[2025-06-03 17:47:01] total 399940
[2025-06-03 17:47:01] -rw-r--r--. 1 boinc boinc    495897 Jun  2 20:30 pilot3.tar.gz
[2025-06-03 17:47:01] -rw-r--r--. 1 boinc boinc      5111 Jun  2 20:42 queuedata.json
[2025-06-03 17:47:01] -rwx------. 1 boinc boinc     37140 Jun  2 20:42 runpilot2-wrapper.sh
[2025-06-03 17:47:01] -rw-r--r--. 1 boinc boinc       100 Jun  3 12:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 17:47:01] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 12:31 run_atlas
[2025-06-03 17:47:01] -rw-r--r--. 1 boinc boinc       105 Jun  3 12:31 job.xml
[2025-06-03 17:47:01] -rw-r--r--. 2 boinc boinc 215020603 Jun  3 12:31 EVNT.45006593._000316.pool.root.1
[2025-06-03 17:47:01] -rw-r--r--. 1 boinc boinc      6392 Jun  3 12:31 init_data.xml
[2025-06-03 17:47:01] -rw-r--r--. 2 boinc boinc     15093 Jun  3 12:31 start_atlas.sh
[2025-06-03 17:47:01] drwxrwx--x. 2 boinc boinc        68 Jun  3 12:31 shared
[2025-06-03 17:47:01] -rw-r--r--. 2 boinc boinc    508876 Jun  3 12:31 input.tar.gz
[2025-06-03 17:47:01] -rw-r--r--. 1 boinc boinc         0 Jun  3 12:31 boinc_lockfile
[2025-06-03 17:47:01] -rw-r--r--. 1 boinc boinc      2521 Jun  3 12:31 pandaJob.out
[2025-06-03 17:47:01] -rw-------. 1 boinc boinc    985490 Jun  3 12:31 agis_schedconf.cvmfs.json
[2025-06-03 17:47:01] drwx------. 4 boinc boinc      4096 Jun  3 12:31 pilot3
[2025-06-03 17:47:01] -rw-------. 1 boinc boinc 187536200 Jun  3 16:18 HITS.45006595._007897.pool.root.1
[2025-06-03 17:47:01] -rw-r--r--. 1 boinc boinc       530 Jun  3 16:19 boinc_task_state.xml
[2025-06-03 17:47:01] -rw-------. 1 boinc boinc      1019 Jun  3 16:20 memory_monitor_summary.json
[2025-06-03 17:47:01] -rw-------. 1 boinc boinc   1603667 Jun  3 16:20 agis_ddmendpoints.agis.ALL.json
[2025-06-03 17:47:01] -rw-------. 1 boinc boinc    391802 Jun  3 16:20 log.45006595._007897.job.log.tgz.1
[2025-06-03 17:47:01] -rw-------. 1 boinc boinc        95 Jun  3 16:21 pilot_heartbeat.json
[2025-06-03 17:47:01] -rw-------. 1 boinc boinc      7689 Jun  3 16:21 heartbeat.json
[2025-06-03 17:47:01] -rw-------. 1 boinc boinc      4417 Jun  3 16:21 pilotlog.txt
[2025-06-03 17:47:01] -rw-------. 1 boinc boinc   1190811 Jun  3 16:22 log.45006595._007897.job.log.1
[2025-06-03 17:47:01] -rw-------. 1 boinc boinc       357 Jun  3 16:22 output.list
[2025-06-03 17:47:01] -rw-r--r--. 1 boinc boinc       620 Jun  3 16:22 runtime_log
[2025-06-03 17:47:01] -rw-------. 1 boinc boinc   1597440 Jun  3 16:22 result.tar.gz
[2025-06-03 17:47:01] -rw-r--r--. 1 boinc boinc      8673 Jun  3 16:22 runtime_log.err
[2025-06-03 17:47:01] -rw-------. 1 boinc boinc       656 Jun  3 16:22 9QHKDmPIPg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDma3fKDmDBiJAo.diag
[2025-06-03 17:47:01] -rw-r--r--. 1 boinc boinc      8192 Jun  3 17:47 boinc_mmap_file
[2025-06-03 17:47:01] -rw-r--r--. 1 boinc boinc        28 Jun  3 17:47 wrapper_checkpoint.txt
[2025-06-03 17:47:01] -rw-r--r--. 1 boinc boinc     20496 Jun  3 17:47 stderr.txt
[2025-06-03 17:47:01] HITS file was successfully produced:
[2025-06-03 17:47:01] -rw-------. 1 boinc boinc 187536200 Jun  3 16:18 shared/HITS.pool.root.1
[2025-06-03 17:47:01]  *** Contents of shared directory: ***
[2025-06-03 17:47:01] total 395204
[2025-06-03 17:47:01] -rw-r--r--. 2 boinc boinc 215020603 Jun  3 12:31 ATLAS.root_0
[2025-06-03 17:47:01] -rw-r--r--. 2 boinc boinc     15093 Jun  3 12:31 start_atlas.sh
[2025-06-03 17:47:01] -rw-r--r--. 2 boinc boinc    508876 Jun  3 12:31 input.tar.gz
[2025-06-03 17:47:01] -rw-------. 1 boinc boinc 187536200 Jun  3 16:18 HITS.pool.root.1
[2025-06-03 17:47:01] -rw-------. 1 boinc boinc   1597440 Jun  3 16:22 result.tar.gz
17:47:03 (28924): run_atlas exited; CPU time 52626.273625
17:47:03 (28924): called boinc_finish(0)

</stderr_txt>
]]>

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