Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:49:57 (1616): wrapper (7.7.26015): starting
08:49:57 (1616): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 08:49:57] Arguments: --nthreads 8
[2025-06-03 08:49:57] Threads: 8
[2025-06-03 08:49:57] Checking for CVMFS
[2025-06-03 08:49:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 08:49:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 08:49:59] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 08:50:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 08:50:00] 2.11.2.0 14868 31556 99704 146731 1 16 24965390 25165824 4639 130560 0 15950443 99.770 19390037 2587 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 08:50:00] CVMFS is ok
[2025-06-03 08:50:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 08:50:00] Checking for apptainer binary...
[2025-06-03 08:50:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 08:50:00] Running /usr/bin/apptainer --version
[2025-06-03 08:50:00] apptainer version 1.3.2-1.el7
[2025-06-03 08:50:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 11:02:47] cg-vwn478.simple-grid.lan
[2025-06-03 11:02:47] apptainer works
[2025-06-03 11:02:47] Set ATHENA_PROC_NUMBER=8
[2025-06-03 11:02:47] Set ATHENA_CORE_NUMBER=8
[2025-06-03 11:02:47] Starting ATLAS job with PandaID=6677400156
[2025-06-03 11:02:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 15:34:50]  *** The last 200 lines of the pilot log: ***
[2025-06-03 15:34:51] 2025-06-03 12:19:06,744 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6677400156/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 15:34:51] 2025-06-03 12:19:06,745 | INFO     | extracted standard info from prmon json
[2025-06-03 15:34:51] 2025-06-03 12:19:06,745 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 15:34:51] 2025-06-03 12:19:06,745 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 15:34:51] 2025-06-03 12:19:06,745 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 15:34:51] 2025-06-03 12:19:06,745 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 15:34:51] 2025-06-03 12:19:06,749 | INFO     | fitting pss+swap vs Time
[2025-06-03 15:34:51] 2025-06-03 12:19:06,750 | INFO     | sum of square deviations: 2126802667.5
[2025-06-03 15:34:51] 2025-06-03 12:19:06,751 | INFO     | sum of deviations: -14556473828.500017
[2025-06-03 15:34:51] 2025-06-03 12:19:06,751 | INFO     | mean x: 1748947240.5
[2025-06-03 15:34:51] 2025-06-03 12:19:06,751 | INFO     | mean y: 2497404.6263157893
[2025-06-03 15:34:51] 2025-06-03 12:19:06,751 | INFO     | -- intersect: 11972815630.5722
[2025-06-03 15:34:51] 2025-06-03 12:19:06,751 | INFO     | intersect: 11972815630.5722
[2025-06-03 15:34:51] 2025-06-03 12:19:06,752 | INFO     | chi2: 2.76709081563676
[2025-06-03 15:34:51] 2025-06-03 12:19:06,752 | INFO     | sum of square deviations: 1963274020.0
[2025-06-03 15:34:51] 2025-06-03 12:19:06,753 | INFO     | sum of deviations: -1519706419.9999983
[2025-06-03 15:34:51] 2025-06-03 12:19:06,753 | INFO     | mean x: 1748947088.0
[2025-06-03 15:34:51] 2025-06-03 12:19:06,754 | INFO     | mean y: 2509313.227027027
[2025-06-03 15:34:51] 2025-06-03 12:19:06,754 | INFO     | -- intersect: 1356312241.8033965
[2025-06-03 15:34:51] 2025-06-03 12:19:06,754 | INFO     | intersect: 1356312241.8033965
[2025-06-03 15:34:51] 2025-06-03 12:19:06,754 | INFO     | chi2: 2.0052504477694324
[2025-06-03 15:34:51] 2025-06-03 12:19:06,754 | INFO     | current chi2=2.0052504477694324 (change=27.532177966916986 %)
[2025-06-03 15:34:51] 2025-06-03 12:19:06,754 | INFO     | sum of square deviations: 1808350185.0
[2025-06-03 15:34:51] 2025-06-03 12:19:06,758 | INFO     | sum of deviations: -1233649787.0000005
[2025-06-03 15:34:51] 2025-06-03 12:19:06,758 | INFO     | mean x: 1748946935.5
[2025-06-03 15:34:51] 2025-06-03 12:19:06,758 | INFO     | mean y: 2509594.8777777776
[2025-06-03 15:34:51] 2025-06-03 12:19:06,758 | INFO     | -- intersect: 1195634705.4624176
[2025-06-03 15:34:51] 2025-06-03 12:19:06,758 | INFO     | intersect: 1195634705.4624176
[2025-06-03 15:34:51] 2025-06-03 12:19:06,759 | INFO     | chi2: 2.005718632115966
[2025-06-03 15:34:51] 2025-06-03 12:19:06,759 | INFO     | current chi2=2.005718632115966 (change=-0.023347923799469535 %)
[2025-06-03 15:34:51] 2025-06-03 12:19:06,759 | INFO     | right removable region: 179
[2025-06-03 15:34:51] 2025-06-03 12:19:06,759 | INFO     | sum of square deviations: 1963274020.0
[2025-06-03 15:34:51] 2025-06-03 12:19:06,760 | INFO     | sum of deviations: -49694658025.0
[2025-06-03 15:34:51] 2025-06-03 12:19:06,761 | INFO     | mean x: 1748947393.0
[2025-06-03 15:34:51] 2025-06-03 12:19:06,761 | INFO     | mean y: 2529866.091891892
[2025-06-03 15:34:51] 2025-06-03 12:19:06,761 | INFO     | -- intersect: 44272123266.43153
[2025-06-03 15:34:51] 2025-06-03 12:19:06,761 | INFO     | intersect: 44272123266.43153
[2025-06-03 15:34:51] 2025-06-03 12:19:06,761 | INFO     | chi2: 0.9762502530590706
[2025-06-03 15:34:51] 2025-06-03 12:19:06,761 | INFO     | current chi2=0.9762502530590706 (change=64.71925505508148 %)
[2025-06-03 15:34:51] 2025-06-03 12:19:06,762 | INFO     | sum of square deviations: 1808350185.0
[2025-06-03 15:34:51] 2025-06-03 12:19:06,763 | INFO     | sum of deviations: -46965614526.99999
[2025-06-03 15:34:51] 2025-06-03 12:19:06,763 | INFO     | mean x: 1748947545.5
[2025-06-03 15:34:51] 2025-06-03 12:19:06,763 | INFO     | mean y: 2527137.644444444
[2025-06-03 15:34:51] 2025-06-03 12:19:06,763 | INFO     | -- intersect: 45425364446.05868
[2025-06-03 15:34:51] 2025-06-03 12:19:06,763 | INFO     | intersect: 45425364446.05868
[2025-06-03 15:34:51] 2025-06-03 12:19:06,764 | INFO     | chi2: 0.9672346122512956
[2025-06-03 15:34:51] 2025-06-03 12:19:06,764 | INFO     | current chi2=0.9672346122512956 (change=0.92349689841561 %)
[2025-06-03 15:34:51] 2025-06-03 12:19:06,764 | INFO     | left removable region: 20
[2025-06-03 15:34:51] 2025-06-03 12:19:06,764 | INFO     | sum of square deviations: 1246386160.0
[2025-06-03 15:34:51] 2025-06-03 12:19:06,765 | INFO     | sum of deviations: -22043821930.000004
[2025-06-03 15:34:51] 2025-06-03 12:19:06,765 | INFO     | mean x: 1748947515.0
[2025-06-03 15:34:51] 2025-06-03 12:19:06,765 | INFO     | mean y: 2529305.710691824
[2025-06-03 15:34:51] 2025-06-03 12:19:06,765 | INFO     | -- intersect: 30934746641.60923
[2025-06-03 15:34:51] 2025-06-03 12:19:06,765 | INFO     | intersect: 30934746641.60923
[2025-06-03 15:34:51] 2025-06-03 12:19:06,766 | INFO     | chi2: 0.150141175541278
[2025-06-03 15:34:51] 2025-06-03 12:19:06,766 | INFO     | -- intersect: 30934746641.60923
[2025-06-03 15:34:51] 2025-06-03 12:19:06,766 | INFO     | current memory leak: -17.69 B/s (using 159 data points, chi2=0.15)
[2025-06-03 15:34:51] 2025-06-03 12:19:06,767 | INFO     | ..............................
[2025-06-03 15:34:51] 2025-06-03 12:19:06,767 | INFO     | . Timing measurements:
[2025-06-03 15:34:51] 2025-06-03 12:19:06,767 | INFO     | . get job = 0 s
[2025-06-03 15:34:51] 2025-06-03 12:19:06,767 | INFO     | . initial setup = 4 s
[2025-06-03 15:34:51] 2025-06-03 12:19:06,767 | INFO     | . payload setup = 16 s
[2025-06-03 15:34:51] 2025-06-03 12:19:06,767 | INFO     | . stage-in = 0 s
[2025-06-03 15:34:51] 2025-06-03 12:19:06,767 | INFO     | . payload execution = 11608 s
[2025-06-03 15:34:51] 2025-06-03 12:19:06,767 | INFO     | . stage-out = 3 s
[2025-06-03 15:34:51] 2025-06-03 12:19:06,767 | INFO     | . log creation = 1 s
[2025-06-03 15:34:51] 2025-06-03 12:19:06,767 | INFO     | ..............................
[2025-06-03 15:34:51] 2025-06-03 12:19:06,908 | INFO     | 
[2025-06-03 15:34:51] 2025-06-03 12:19:06,908 | INFO     | job summary report
[2025-06-03 15:34:51] 2025-06-03 12:19:06,908 | INFO     | --------------------------------------------------
[2025-06-03 15:34:51] 2025-06-03 12:19:06,909 | INFO     | PanDA job id: 6677400156
[2025-06-03 15:34:51] 2025-06-03 12:19:06,909 | INFO     | task id: 45006595
[2025-06-03 15:34:51] 2025-06-03 12:19:06,909 | INFO     | errors: (none)
[2025-06-03 15:34:51] 2025-06-03 12:19:06,909 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 15:34:51] 2025-06-03 12:19:06,909 | INFO     | pilot state: finished 
[2025-06-03 15:34:51] 2025-06-03 12:19:06,909 | INFO     | transexitcode: 0
[2025-06-03 15:34:51] 2025-06-03 12:19:06,909 | INFO     | exeerrorcode: 0
[2025-06-03 15:34:51] 2025-06-03 12:19:06,909 | INFO     | exeerrordiag: 
[2025-06-03 15:34:51] 2025-06-03 12:19:06,909 | INFO     | exitcode: 0
[2025-06-03 15:34:51] 2025-06-03 12:19:06,909 | INFO     | exitmsg: OK
[2025-06-03 15:34:51] 2025-06-03 12:19:06,909 | INFO     | cpuconsumptiontime: 43638 s
[2025-06-03 15:34:51] 2025-06-03 12:19:06,909 | INFO     | nevents: 400
[2025-06-03 15:34:51] 2025-06-03 12:19:06,909 | INFO     | neventsw: 0
[2025-06-03 15:34:51] 2025-06-03 12:19:06,910 | INFO     | pid: 21746
[2025-06-03 15:34:51] 2025-06-03 12:19:06,910 | INFO     | pgrp: 21746
[2025-06-03 15:34:51] 2025-06-03 12:19:06,910 | INFO     | corecount: 8
[2025-06-03 15:34:51] 2025-06-03 12:19:06,910 | INFO     | event service: False
[2025-06-03 15:34:51] 2025-06-03 12:19:06,910 | INFO     | sizes: {0: 2405009, 1: 2405208, 12: 2405208, 13: 2405442, 23: 2405498, 11629: 2434435, 11634: 2443432, 11721: 2443546}
[2025-06-03 15:34:51] 2025-06-03 12:19:06,910 | INFO     | --------------------------------------------------
[2025-06-03 15:34:51] 2025-06-03 12:19:06,910 | INFO     | 
[2025-06-03 15:34:51] 2025-06-03 12:19:06,910 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-06-03 15:34:51] 2025-06-03 12:19:07,018 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 15:34:51] 2025-06-03 12:19:07,018 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 15:34:51] 2025-06-03 12:19:07,019 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 15:34:51] 2025-06-03 12:19:07,019 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 15:34:51] 2025-06-03 12:19:07,019 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 15:34:51] 2025-06-03 12:19:07,019 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 15:34:51] 2025-06-03 12:19:07,019 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 15:34:51] 2025-06-03 12:19:07,019 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 15:34:51] 2025-06-03 12:19:07,019 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 15:34:51] 2025-06-03 12:19:07,019 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 15:34:51] 2025-06-03 12:19:07,019 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 15:34:51] 2025-06-03 12:19:07,019 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 15:34:51] 2025-06-03 12:19:07,019 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 15:34:51] 2025-06-03 12:19:07,020 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 15:34:51] 2025-06-03 12:19:07,020 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 15:34:51] 2025-06-03 12:19:07,020 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 15:34:51] 2025-06-03 12:19:07,020 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 15:34:51] 2025-06-03 12:19:07,020 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 15:34:51] 2025-06-03 12:19:07,020 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 15:34:51] 2025-06-03 12:19:07,020 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 15:34:51] 2025-06-03 12:19:07,020 | INFO     | job 6677400156 has completed (purged errors)
[2025-06-03 15:34:51] 2025-06-03 12:19:07,020 | INFO     | overall cleanup function is called
[2025-06-03 15:34:51] 2025-06-03 12:19:08,029 | INFO     | --- collectZombieJob: --- 10, [21746]
[2025-06-03 15:34:51] 2025-06-03 12:19:08,030 | INFO     | zombie collector waiting for pid 21746
[2025-06-03 15:34:51] 2025-06-03 12:19:08,030 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 15:34:51] 2025-06-03 12:19:08,030 | INFO     | collected zombie processes
[2025-06-03 15:34:51] 2025-06-03 12:19:08,030 | INFO     | will attempt to kill all subprocesses of pid=21746
[2025-06-03 15:34:51] 2025-06-03 12:19:08,152 | INFO     | process IDs to be killed: [21746] (in reverse order)
[2025-06-03 15:34:51] 2025-06-03 12:19:08,884 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 15:34:51] 2025-06-03 12:19:08,884 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 15:34:51] 2025-06-03 12:19:08,887 | INFO     | did not find any defunct processes belonging to 21746
[2025-06-03 15:34:51] 2025-06-03 12:19:08,890 | INFO     | did not find any defunct processes belonging to 21746
[2025-06-03 15:34:51] 2025-06-03 12:19:08,890 | INFO     | ready for new job
[2025-06-03 15:34:51] 2025-06-03 12:19:08,890 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 15:34:51] 2025-06-03 12:19:08,892 | INFO     | **************************************
[2025-06-03 15:34:51] 2025-06-03 12:19:08,892 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 15:34:51] 2025-06-03 12:19:08,892 | INFO     | **************************************
[2025-06-03 15:34:51] 2025-06-03 12:19:08,892 | INFO     | 
[2025-06-03 15:34:51] 2025-06-03 12:19:08,892 | INFO     | pilot is running in a VM
[2025-06-03 15:34:51] 2025-06-03 12:19:08,893 | INFO     | architecture information:
[2025-06-03 15:34:51] 2025-06-03 12:19:08,904 | INFO     | executing command: cat /etc/os-release
[2025-06-03 15:34:51] 2025-06-03 12:19:09,174 | INFO     | cat /etc/os-release:
[2025-06-03 15:34:51] NAME="CentOS Linux"
[2025-06-03 15:34:51] VERSION="7 (Core)"
[2025-06-03 15:34:51] ID="centos"
[2025-06-03 15:34:51] ID_LIKE="rhel fedora"
[2025-06-03 15:34:51] VERSION_ID="7"
[2025-06-03 15:34:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 15:34:51] ANSI_COLOR="0;31"
[2025-06-03 15:34:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 15:34:51] HOME_URL="https://www.centos.org/"
[2025-06-03 15:34:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 15:34:51] 
[2025-06-03 15:34:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 15:34:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 15:34:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 15:34:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 15:34:51] 
[2025-06-03 15:34:51] 2025-06-03 12:19:09,174 | INFO     | **************************************
[2025-06-03 15:34:51] 2025-06-03 12:19:09,677 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-06-03 15:34:51] 2025-06-03 12:19:09,950 | INFO     | sufficient remaining disk space (497078501376 B)
[2025-06-03 15:34:51] 2025-06-03 12:19:09,951 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 15:34:51] 2025-06-03 12:19:09,951 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 15:34:51] 2025-06-03 12:19:09,951 | INFO     | update_server=False
[2025-06-03 15:34:51] 2025-06-03 12:19:09,951 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 15:34:51] 2025-06-03 12:19:09,952 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 15:34:51] 2025-06-03 12:19:09,952 | INFO     | aborting loop
[2025-06-03 15:34:51] 2025-06-03 12:19:10,058 | INFO     | all data control threads have been joined
[2025-06-03 15:34:51] 2025-06-03 12:19:10,067 | INFO     | all payload control threads have been joined
[2025-06-03 15:34:51] 2025-06-03 12:19:10,146 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 15:34:51] 2025-06-03 12:19:10,146 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 15:34:51] 2025-06-03 12:19:10,146 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 15:34:51] 2025-06-03 12:19:10,884 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 15:34:51] 2025-06-03 12:19:10,957 | INFO     | [job] retrieve thread has finished
[2025-06-03 15:34:51] 2025-06-03 12:19:10,958 | INFO     | [job] job monitor thread has finished
[2025-06-03 15:34:51] 2025-06-03 12:19:11,064 | INFO     | [data] control thread has finished
[2025-06-03 15:34:51] 2025-06-03 12:19:11,073 | INFO     | [payload] control thread has finished
[2025-06-03 15:34:51] 2025-06-03 12:19:11,221 | INFO     | all job control threads have been joined
[2025-06-03 15:34:51] 2025-06-03 12:19:11,230 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 15:34:51] 2025-06-03 12:19:11,277 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 15:34:51] 2025-06-03 12:19:11,688 | INFO     | [job] validate thread has finished
[2025-06-03 15:34:51] 2025-06-03 12:19:11,696 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 15:34:51] 2025-06-03 12:19:11,776 | INFO     | [payload] validate_post thread has finished
[2025-06-03 15:34:51] 2025-06-03 12:19:11,926 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 15:34:51] 2025-06-03 12:19:11,957 | INFO     | [payload] failed_post thread has finished
[2025-06-03 15:34:51] 2025-06-03 12:19:12,028 | INFO     | [data] copytool_in thread has finished
[2025-06-03 15:34:51] 2025-06-03 12:19:12,227 | INFO     | [job] control thread has finished
[2025-06-03 15:34:51] 2025-06-03 12:19:12,238 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 15:34:51] 2025-06-03 12:19:12,336 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 15:34:51] 2025-06-03 12:19:12,895 | INFO     | [data] copytool_out thread has finished
[2025-06-03 15:34:51] 2025-06-03 12:19:12,933 | INFO     | [job] queue monitor thread has finished
[2025-06-03 15:34:51] 2025-06-03 12:19:16,345 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 15:34:51] 2025-06-03 12:19:16,387 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139976487020352)>', '<ExcThread(monitor, started 139975920178944)>']
[2025-06-03 15:34:51] 2025-06-03 12:19:17,187 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 15:34:51] 2025-06-03 12:19:17,188 | INFO     | [monitor] control thread has ended
[2025-06-03 15:34:51] 2025-06-03 12:19:21,412 | INFO     | all workflow threads have been joined
[2025-06-03 15:34:51] 2025-06-03 12:19:21,413 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 15:34:51] 2025-06-03 12:19:21,413 | INFO     | traces error code: 0
[2025-06-03 15:34:51] 2025-06-03 12:19:21,413 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 15:34:51] 2025-06-03 12:19:21,749 [wrapper] ==== pilot stdout END ====
[2025-06-03 15:34:51] 2025-06-03 12:19:21,790 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 15:34:51] 2025-06-03 12:19:21,882 [wrapper] pilotpid: 11140
[2025-06-03 15:34:51] 2025-06-03 12:19:21,970 [wrapper] Pilot exit status: 0
[2025-06-03 15:34:51] 2025-06-03 12:19:22,222 [wrapper] pandaids: 6677400156
[2025-06-03 15:34:51] 2025-06-03 12:19:22,838 [wrapper] cleanup supervisor_pilot  7006 11141
[2025-06-03 15:34:51] 2025-06-03 12:19:22,896 [wrapper] Test setup, not cleaning
[2025-06-03 15:34:51] 2025-06-03 12:19:22,961 [wrapper] apfmon messages muted
[2025-06-03 15:34:51] 2025-06-03 12:19:23,087 [wrapper] ==== wrapper stdout END ====
[2025-06-03 15:34:51] 2025-06-03 12:19:23,164 [wrapper] ==== wrapper stderr END ====
[2025-06-03 15:34:51]  *** Error codes and diagnostics ***
[2025-06-03 15:34:51]     "exeErrorCode": 0,
[2025-06-03 15:34:51]     "exeErrorDiag": "",
[2025-06-03 15:34:51]     "pilotErrorCode": 0,
[2025-06-03 15:34:51]     "pilotErrorDiag": "",
[2025-06-03 15:34:51]  *** Listing of results directory ***
[2025-06-03 15:34:51] total 387612
[2025-06-03 15:34:51] -rw-r--r--. 1 boinc boinc    495897 Jun  2 22:11 pilot3.tar.gz
[2025-06-03 15:34:51] -rw-r--r--. 1 boinc boinc      5111 Jun  2 22:40 queuedata.json
[2025-06-03 15:34:51] -rwx------. 1 boinc boinc     37140 Jun  2 22:42 runpilot2-wrapper.sh
[2025-06-03 15:34:51] -rw-r--r--. 1 boinc boinc       100 Jun  3 08:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 15:34:51] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 08:49 run_atlas
[2025-06-03 15:34:51] -rw-r--r--. 1 boinc boinc       105 Jun  3 08:49 job.xml
[2025-06-03 15:34:51] -rw-r--r--. 2 boinc boinc 213449061 Jun  3 08:49 EVNT.45006593._000456.pool.root.1
[2025-06-03 15:34:51] -rw-r--r--. 2 boinc boinc    508875 Jun  3 08:49 input.tar.gz
[2025-06-03 15:34:51] -rw-r--r--. 1 boinc boinc      6392 Jun  3 08:49 init_data.xml
[2025-06-03 15:34:51] -rw-r--r--. 2 boinc boinc     15093 Jun  3 08:49 start_atlas.sh
[2025-06-03 15:34:51] drwxrwx--x. 2 boinc boinc        68 Jun  3 08:49 shared
[2025-06-03 15:34:51] -rw-r--r--. 1 boinc boinc         0 Jun  3 08:49 boinc_lockfile
[2025-06-03 15:34:51] -rw-r--r--. 1 boinc boinc      2523 Jun  3 11:02 pandaJob.out
[2025-06-03 15:34:51] -rw-------. 1 boinc boinc    985498 Jun  3 11:03 agis_schedconf.cvmfs.json
[2025-06-03 15:34:51] drwx------. 4 boinc boinc      4096 Jun  3 11:03 pilot3
[2025-06-03 15:34:51] -rw-------. 1 boinc boinc 176875998 Jun  3 14:16 HITS.45006595._011380.pool.root.1
[2025-06-03 15:34:51] -rw-r--r--. 1 boinc boinc       531 Jun  3 14:16 boinc_task_state.xml
[2025-06-03 15:34:51] -rw-------. 1 boinc boinc      1020 Jun  3 14:17 memory_monitor_summary.json
[2025-06-03 15:34:51] -rw-------. 1 boinc boinc   1603667 Jun  3 14:17 agis_ddmendpoints.agis.ALL.json
[2025-06-03 15:34:51] -rw-------. 1 boinc boinc    353180 Jun  3 14:17 log.45006595._011380.job.log.tgz.1
[2025-06-03 15:34:51] -rw-------. 1 boinc boinc        95 Jun  3 14:18 pilot_heartbeat.json
[2025-06-03 15:34:51] -rw-------. 1 boinc boinc      7693 Jun  3 14:19 heartbeat.json
[2025-06-03 15:34:51] -rw-------. 1 boinc boinc      4416 Jun  3 14:19 pilotlog.txt
[2025-06-03 15:34:51] -rw-------. 1 boinc boinc   1028651 Jun  3 14:19 log.45006595._011380.job.log.1
[2025-06-03 15:34:51] -rw-------. 1 boinc boinc       357 Jun  3 14:19 output.list
[2025-06-03 15:34:51] -rw-r--r--. 1 boinc boinc       620 Jun  3 14:19 runtime_log
[2025-06-03 15:34:51] -rw-------. 1 boinc boinc   1402880 Jun  3 14:19 result.tar.gz
[2025-06-03 15:34:51] -rw-r--r--. 1 boinc boinc      8659 Jun  3 14:19 runtime_log.err
[2025-06-03 15:34:51] -rw-------. 1 boinc boinc       656 Jun  3 14:19 IdXMDmHARg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmCegKDmfncqCo.diag
[2025-06-03 15:34:51] -rw-r--r--. 1 boinc boinc      8192 Jun  3 15:34 boinc_mmap_file
[2025-06-03 15:34:51] -rw-r--r--. 1 boinc boinc        28 Jun  3 15:34 wrapper_checkpoint.txt
[2025-06-03 15:34:51] -rw-r--r--. 1 boinc boinc     20482 Jun  3 15:34 stderr.txt
[2025-06-03 15:34:51] HITS file was successfully produced:
[2025-06-03 15:34:51] -rw-------. 1 boinc boinc 176875998 Jun  3 14:16 shared/HITS.pool.root.1
[2025-06-03 15:34:51]  *** Contents of shared directory: ***
[2025-06-03 15:34:51] total 383068
[2025-06-03 15:34:51] -rw-r--r--. 2 boinc boinc 213449061 Jun  3 08:49 ATLAS.root_0
[2025-06-03 15:34:51] -rw-r--r--. 2 boinc boinc    508875 Jun  3 08:49 input.tar.gz
[2025-06-03 15:34:51] -rw-r--r--. 2 boinc boinc     15093 Jun  3 08:49 start_atlas.sh
[2025-06-03 15:34:51] -rw-------. 1 boinc boinc 176875998 Jun  3 14:16 HITS.pool.root.1
[2025-06-03 15:34:51] -rw-------. 1 boinc boinc   1402880 Jun  3 14:19 result.tar.gz
15:34:52 (1616): run_atlas exited; CPU time 43774.244917
15:34:52 (1616): called boinc_finish(0)

</stderr_txt>
]]>

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