Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:45:35 (20548): wrapper (7.7.26015): starting
07:45:35 (20548): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 07:45:35] Arguments: --nthreads 8
[2025-06-03 07:45:35] Threads: 8
[2025-06-03 07:45:35] Checking for CVMFS
[2025-06-03 07:45:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 07:45:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 07:45:36] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 07:45:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 07:45:37] 2.11.2.0 4192 31547 92080 146729 2 159 24334217 25165825 4054 130560 0 15548337 99.834 16471666 2009 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 07:45:37] CVMFS is ok
[2025-06-03 07:45:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 07:45:37] Checking for apptainer binary...
[2025-06-03 07:45:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 07:45:37] Running /usr/bin/apptainer --version
[2025-06-03 07:45:37] apptainer version 1.3.2-1.el7
[2025-06-03 07:45:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 07:45:39] cg-vwn295.simple-grid.lan
[2025-06-03 07:45:39] apptainer works
[2025-06-03 07:45:39] Set ATHENA_PROC_NUMBER=8
[2025-06-03 07:45:39] Set ATHENA_CORE_NUMBER=8
[2025-06-03 07:45:39] Starting ATLAS job with PandaID=6677400052
[2025-06-03 07:45:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 11:46:55]  *** The last 200 lines of the pilot log: ***
[2025-06-03 11:46:55] 2025-06-03 09:22:23,777 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 11:46:55] 2025-06-03 09:22:23,777 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 11:46:55] 2025-06-03 09:22:23,777 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 11:46:55] 2025-06-03 09:22:23,778 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 11:46:55] 2025-06-03 09:22:23,782 | INFO     | fitting pss+swap vs Time
[2025-06-03 11:46:55] 2025-06-03 09:22:23,782 | INFO     | sum of square deviations: 2871616632.5
[2025-06-03 11:46:55] 2025-06-03 09:22:23,784 | INFO     | sum of deviations: 41257487890.499985
[2025-06-03 11:46:55] 2025-06-03 09:22:23,784 | INFO     | mean x: 1748936062.5
[2025-06-03 11:46:55] 2025-06-03 09:22:23,784 | INFO     | mean y: 2448939.319047619
[2025-06-03 11:46:55] 2025-06-03 09:22:23,784 | INFO     | -- intersect: -25125107296.150166
[2025-06-03 11:46:55] 2025-06-03 09:22:23,785 | INFO     | intersect: -25125107296.150166
[2025-06-03 11:46:55] 2025-06-03 09:22:23,785 | INFO     | chi2: 5.223200012395327
[2025-06-03 11:46:55] 2025-06-03 09:22:23,785 | INFO     | sum of square deviations: 2671343110.0
[2025-06-03 11:46:55] 2025-06-03 09:22:23,787 | INFO     | sum of deviations: 53740012897.99999
[2025-06-03 11:46:55] 2025-06-03 09:22:23,787 | INFO     | mean x: 1748935910.0
[2025-06-03 11:46:55] 2025-06-03 09:22:23,787 | INFO     | mean y: 2458241.751219512
[2025-06-03 11:46:55] 2025-06-03 09:22:23,787 | INFO     | -- intersect: -35181280608.31936
[2025-06-03 11:46:55] 2025-06-03 09:22:23,788 | INFO     | intersect: -35181280608.31936
[2025-06-03 11:46:55] 2025-06-03 09:22:23,788 | INFO     | chi2: 4.501100684011137
[2025-06-03 11:46:55] 2025-06-03 09:22:23,788 | INFO     | current chi2=4.501100684011137 (change=13.824845433269935 %)
[2025-06-03 11:46:55] 2025-06-03 09:22:23,788 | INFO     | right removable region: 204
[2025-06-03 11:46:55] 2025-06-03 09:22:23,789 | INFO     | sum of square deviations: 2671343110.0
[2025-06-03 11:46:55] 2025-06-03 09:22:23,790 | INFO     | sum of deviations: -23811427043.0
[2025-06-03 11:46:55] 2025-06-03 09:22:23,791 | INFO     | mean x: 1748936215.0
[2025-06-03 11:46:55] 2025-06-03 09:22:23,791 | INFO     | mean y: 2498405.648780488
[2025-06-03 11:46:55] 2025-06-03 09:22:23,791 | INFO     | -- intersect: 15591909938.16175
[2025-06-03 11:46:55] 2025-06-03 09:22:23,791 | INFO     | intersect: 15591909938.16175
[2025-06-03 11:46:55] 2025-06-03 09:22:23,791 | INFO     | chi2: 1.4116169221417265
[2025-06-03 11:46:55] 2025-06-03 09:22:23,791 | INFO     | current chi2=1.4116169221417265 (change=72.97409789416875 %)
[2025-06-03 11:46:55] 2025-06-03 09:22:23,792 | INFO     | sum of square deviations: 2480604650.0
[2025-06-03 11:46:55] 2025-06-03 09:22:23,793 | INFO     | sum of deviations: -41164838101.50001
[2025-06-03 11:46:55] 2025-06-03 09:22:23,793 | INFO     | mean x: 1748936367.5
[2025-06-03 11:46:55] 2025-06-03 09:22:23,794 | INFO     | mean y: 2512137.945
[2025-06-03 11:46:55] 2025-06-03 09:22:23,794 | INFO     | -- intersect: 29025549895.276875
[2025-06-03 11:46:55] 2025-06-03 09:22:23,794 | INFO     | intersect: 29025549895.276875
[2025-06-03 11:46:55] 2025-06-03 09:22:23,794 | INFO     | chi2: 0.9475775766032095
[2025-06-03 11:46:55] 2025-06-03 09:22:23,794 | INFO     | current chi2=0.9475775766032095 (change=32.87289478185551 %)
[2025-06-03 11:46:55] 2025-06-03 09:22:23,795 | INFO     | sum of square deviations: 2299168690.0
[2025-06-03 11:46:55] 2025-06-03 09:22:23,796 | INFO     | sum of deviations: -37199039276.0
[2025-06-03 11:46:55] 2025-06-03 09:22:23,796 | INFO     | mean x: 1748936520.0
[2025-06-03 11:46:55] 2025-06-03 09:22:23,797 | INFO     | mean y: 2508772.235897436
[2025-06-03 11:46:55] 2025-06-03 09:22:23,797 | INFO     | -- intersect: 28299152938.31088
[2025-06-03 11:46:55] 2025-06-03 09:22:23,797 | INFO     | intersect: 28299152938.31088
[2025-06-03 11:46:55] 2025-06-03 09:22:23,797 | INFO     | chi2: 0.9361753965623016
[2025-06-03 11:46:55] 2025-06-03 09:22:23,797 | INFO     | current chi2=0.9361753965623016 (change=1.203297790327772 %)
[2025-06-03 11:46:55] 2025-06-03 09:22:23,798 | INFO     | left removable region: 30
[2025-06-03 11:46:55] 2025-06-03 09:22:23,798 | INFO     | sum of square deviations: 1633472487.5
[2025-06-03 11:46:55] 2025-06-03 09:22:23,799 | INFO     | sum of deviations: -4079678505.4999976
[2025-06-03 11:46:55] 2025-06-03 09:22:23,799 | INFO     | mean x: 1748936794.5
[2025-06-03 11:46:55] 2025-06-03 09:22:23,799 | INFO     | mean y: 2500834.9022988505
[2025-06-03 11:46:55] 2025-06-03 09:22:23,799 | INFO     | -- intersect: 4370557170.469883
[2025-06-03 11:46:55] 2025-06-03 09:22:23,800 | INFO     | intersect: 4370557170.469883
[2025-06-03 11:46:55] 2025-06-03 09:22:23,800 | INFO     | chi2: 0.060754512648297156
[2025-06-03 11:46:55] 2025-06-03 09:22:23,800 | INFO     | -- intersect: 4370557170.469883
[2025-06-03 11:46:55] 2025-06-03 09:22:23,800 | INFO     | current memory leak: -2.50 B/s (using 174 data points, chi2=0.06)
[2025-06-03 11:46:55] 2025-06-03 09:22:23,801 | INFO     | ..............................
[2025-06-03 11:46:55] 2025-06-03 09:22:23,801 | INFO     | . Timing measurements:
[2025-06-03 11:46:55] 2025-06-03 09:22:23,801 | INFO     | . get job = 0 s
[2025-06-03 11:46:55] 2025-06-03 09:22:23,801 | INFO     | . initial setup = 2 s
[2025-06-03 11:46:55] 2025-06-03 09:22:23,801 | INFO     | . payload setup = 24 s
[2025-06-03 11:46:55] 2025-06-03 09:22:23,802 | INFO     | . stage-in = 0 s
[2025-06-03 11:46:55] 2025-06-03 09:22:23,802 | INFO     | . payload execution = 12825 s
[2025-06-03 11:46:55] 2025-06-03 09:22:23,802 | INFO     | . stage-out = 3 s
[2025-06-03 11:46:55] 2025-06-03 09:22:23,802 | INFO     | . log creation = 1 s
[2025-06-03 11:46:55] 2025-06-03 09:22:23,802 | INFO     | ..............................
[2025-06-03 11:46:55] 2025-06-03 09:22:23,939 | INFO     | 
[2025-06-03 11:46:55] 2025-06-03 09:22:23,940 | INFO     | job summary report
[2025-06-03 11:46:55] 2025-06-03 09:22:23,940 | INFO     | --------------------------------------------------
[2025-06-03 11:46:55] 2025-06-03 09:22:23,940 | INFO     | PanDA job id: 6677400052
[2025-06-03 11:46:55] 2025-06-03 09:22:23,940 | INFO     | task id: 45006595
[2025-06-03 11:46:55] 2025-06-03 09:22:23,940 | INFO     | errors: (none)
[2025-06-03 11:46:55] 2025-06-03 09:22:23,940 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 11:46:55] 2025-06-03 09:22:23,940 | INFO     | pilot state: finished 
[2025-06-03 11:46:55] 2025-06-03 09:22:23,940 | INFO     | transexitcode: 0
[2025-06-03 11:46:55] 2025-06-03 09:22:23,940 | INFO     | exeerrorcode: 0
[2025-06-03 11:46:55] 2025-06-03 09:22:23,941 | INFO     | exeerrordiag: 
[2025-06-03 11:46:55] 2025-06-03 09:22:23,941 | INFO     | exitcode: 0
[2025-06-03 11:46:55] 2025-06-03 09:22:23,941 | INFO     | exitmsg: OK
[2025-06-03 11:46:55] 2025-06-03 09:22:23,941 | INFO     | cpuconsumptiontime: 47994 s
[2025-06-03 11:46:55] 2025-06-03 09:22:23,941 | INFO     | nevents: 400
[2025-06-03 11:46:55] 2025-06-03 09:22:23,941 | INFO     | neventsw: 0
[2025-06-03 11:46:55] 2025-06-03 09:22:23,941 | INFO     | pid: 12235
[2025-06-03 11:46:55] 2025-06-03 09:22:23,941 | INFO     | pgrp: 12235
[2025-06-03 11:46:55] 2025-06-03 09:22:23,941 | INFO     | corecount: 8
[2025-06-03 11:46:55] 2025-06-03 09:22:23,942 | INFO     | event service: False
[2025-06-03 11:46:55] 2025-06-03 09:22:23,942 | INFO     | sizes: {0: 2405012, 1: 2405211, 12: 2405211, 15: 2405445, 22: 2405473, 12853: 2434856, 12857: 2443799, 12858: 2443855, 12940: 2444025}
[2025-06-03 11:46:55] 2025-06-03 09:22:23,942 | INFO     | --------------------------------------------------
[2025-06-03 11:46:55] 2025-06-03 09:22:23,942 | INFO     | 
[2025-06-03 11:46:55] 2025-06-03 09:22:23,942 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-06-03 11:46:55] 2025-06-03 09:22:24,029 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 11:46:55] 2025-06-03 09:22:24,029 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 11:46:55] 2025-06-03 09:22:24,029 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 11:46:55] 2025-06-03 09:22:24,029 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 11:46:55] 2025-06-03 09:22:24,029 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 11:46:55] 2025-06-03 09:22:24,029 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 11:46:55] 2025-06-03 09:22:24,030 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 11:46:55] 2025-06-03 09:22:24,030 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 11:46:55] 2025-06-03 09:22:24,030 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 11:46:55] 2025-06-03 09:22:24,030 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 11:46:55] 2025-06-03 09:22:24,030 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 11:46:55] 2025-06-03 09:22:24,030 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 11:46:55] 2025-06-03 09:22:24,030 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 11:46:55] 2025-06-03 09:22:24,030 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 11:46:55] 2025-06-03 09:22:24,030 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 11:46:55] 2025-06-03 09:22:24,030 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 11:46:55] 2025-06-03 09:22:24,030 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 11:46:55] 2025-06-03 09:22:24,030 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 11:46:55] 2025-06-03 09:22:24,031 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 11:46:55] 2025-06-03 09:22:24,031 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 11:46:55] 2025-06-03 09:22:24,031 | INFO     | job 6677400052 has completed (purged errors)
[2025-06-03 11:46:55] 2025-06-03 09:22:24,031 | INFO     | overall cleanup function is called
[2025-06-03 11:46:55] 2025-06-03 09:22:25,040 | INFO     | --- collectZombieJob: --- 10, [12235]
[2025-06-03 11:46:55] 2025-06-03 09:22:25,040 | INFO     | zombie collector waiting for pid 12235
[2025-06-03 11:46:55] 2025-06-03 09:22:25,041 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 11:46:55] 2025-06-03 09:22:25,041 | INFO     | collected zombie processes
[2025-06-03 11:46:55] 2025-06-03 09:22:25,041 | INFO     | will attempt to kill all subprocesses of pid=12235
[2025-06-03 11:46:55] 2025-06-03 09:22:25,143 | INFO     | process IDs to be killed: [12235] (in reverse order)
[2025-06-03 11:46:55] 2025-06-03 09:22:25,714 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 11:46:55] 2025-06-03 09:22:25,715 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 11:46:55] 2025-06-03 09:22:25,718 | INFO     | did not find any defunct processes belonging to 12235
[2025-06-03 11:46:55] 2025-06-03 09:22:25,721 | INFO     | did not find any defunct processes belonging to 12235
[2025-06-03 11:46:55] 2025-06-03 09:22:25,722 | INFO     | ready for new job
[2025-06-03 11:46:55] 2025-06-03 09:22:25,722 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 11:46:55] 2025-06-03 09:22:25,724 | INFO     | **************************************
[2025-06-03 11:46:55] 2025-06-03 09:22:25,724 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 11:46:55] 2025-06-03 09:22:25,724 | INFO     | **************************************
[2025-06-03 11:46:55] 2025-06-03 09:22:25,724 | INFO     | 
[2025-06-03 11:46:55] 2025-06-03 09:22:25,725 | INFO     | pilot is running in a VM
[2025-06-03 11:46:55] 2025-06-03 09:22:25,725 | INFO     | architecture information:
[2025-06-03 11:46:55] 2025-06-03 09:22:25,725 | INFO     | executing command: cat /etc/os-release
[2025-06-03 11:46:55] 2025-06-03 09:22:26,007 | INFO     | cat /etc/os-release:
[2025-06-03 11:46:55] NAME="CentOS Linux"
[2025-06-03 11:46:55] VERSION="7 (Core)"
[2025-06-03 11:46:55] ID="centos"
[2025-06-03 11:46:55] ID_LIKE="rhel fedora"
[2025-06-03 11:46:55] VERSION_ID="7"
[2025-06-03 11:46:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 11:46:55] ANSI_COLOR="0;31"
[2025-06-03 11:46:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 11:46:55] HOME_URL="https://www.centos.org/"
[2025-06-03 11:46:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 11:46:55] 
[2025-06-03 11:46:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 11:46:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 11:46:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 11:46:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 11:46:55] 
[2025-06-03 11:46:55] 2025-06-03 09:22:26,007 | INFO     | **************************************
[2025-06-03 11:46:55] 2025-06-03 09:22:26,513 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-06-03 11:46:55] 2025-06-03 09:22:26,611 | INFO     | sufficient remaining disk space (496860397568 B)
[2025-06-03 11:46:55] 2025-06-03 09:22:26,611 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 11:46:55] 2025-06-03 09:22:26,611 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 11:46:55] 2025-06-03 09:22:26,612 | INFO     | update_server=False
[2025-06-03 11:46:55] 2025-06-03 09:22:26,612 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 11:46:55] 2025-06-03 09:22:26,613 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 11:46:55] 2025-06-03 09:22:26,614 | INFO     | aborting loop
[2025-06-03 11:46:55] 2025-06-03 09:22:26,671 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 11:46:55] 2025-06-03 09:22:27,345 | INFO     | PID=26707 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-03 11:46:55] 2025-06-03 09:22:27,345 | INFO     | .. there are 9 such processes running
[2025-06-03 11:46:55] 2025-06-03 09:22:27,345 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 11:46:55] 2025-06-03 09:22:27,345 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 11:46:55] 2025-06-03 09:22:27,345 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 11:46:55] 2025-06-03 09:22:27,425 | INFO     | all data control threads have been joined
[2025-06-03 11:46:55] 2025-06-03 09:22:27,609 | INFO     | all job control threads have been joined
[2025-06-03 11:46:55] 2025-06-03 09:22:27,617 | INFO     | [job] retrieve thread has finished
[2025-06-03 11:46:55] 2025-06-03 09:22:27,619 | INFO     | [job] job monitor thread has finished
[2025-06-03 11:46:55] 2025-06-03 09:22:27,836 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 11:46:55] 2025-06-03 09:22:27,894 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 11:46:55] 2025-06-03 09:22:27,993 | INFO     | [data] copytool_in thread has finished
[2025-06-03 11:46:55] 2025-06-03 09:22:28,090 | INFO     | all payload control threads have been joined
[2025-06-03 11:46:55] 2025-06-03 09:22:28,146 | INFO     | [payload] validate_post thread has finished
[2025-06-03 11:46:55] 2025-06-03 09:22:28,297 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 11:46:55] 2025-06-03 09:22:28,392 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 11:46:55] 2025-06-03 09:22:28,431 | INFO     | [data] control thread has finished
[2025-06-03 11:46:55] 2025-06-03 09:22:28,615 | INFO     | [job] control thread has finished
[2025-06-03 11:46:55] 2025-06-03 09:22:28,678 | INFO     | [data] copytool_out thread has finished
[2025-06-03 11:46:55] 2025-06-03 09:22:28,956 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 11:46:55] 2025-06-03 09:22:29,002 | INFO     | [job] validate thread has finished
[2025-06-03 11:46:55] 2025-06-03 09:22:29,096 | INFO     | [payload] control thread has finished
[2025-06-03 11:46:55] 2025-06-03 09:22:29,131 | INFO     | [payload] failed_post thread has finished
[2025-06-03 11:46:55] 2025-06-03 09:22:29,248 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 11:46:55] 2025-06-03 09:22:29,962 | INFO     | [job] queue monitor thread has finished
[2025-06-03 11:46:55] 2025-06-03 09:22:33,258 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 11:46:55] 2025-06-03 09:22:33,764 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139635969271616)>', '<ExcThread(monitor, started 139635158152960)>']
[2025-06-03 11:46:55] 2025-06-03 09:22:34,386 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 11:46:55] 2025-06-03 09:22:34,386 | INFO     | [monitor] control thread has ended
[2025-06-03 11:46:55] 2025-06-03 09:22:38,790 | INFO     | all workflow threads have been joined
[2025-06-03 11:46:55] 2025-06-03 09:22:38,790 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 11:46:55] 2025-06-03 09:22:38,791 | INFO     | traces error code: 0
[2025-06-03 11:46:55] 2025-06-03 09:22:38,791 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 11:46:55] 2025-06-03 09:22:39,091 [wrapper] ==== pilot stdout END ====
[2025-06-03 11:46:55] 2025-06-03 09:22:39,144 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 11:46:55] 2025-06-03 09:22:39,240 [wrapper] pilotpid: 26707
[2025-06-03 11:46:55] 2025-06-03 09:22:39,361 [wrapper] Pilot exit status: 0
[2025-06-03 11:46:55] 2025-06-03 09:22:39,742 [wrapper] pandaids: 6677400052
[2025-06-03 11:46:55] 2025-06-03 09:22:40,253 [wrapper] cleanup supervisor_pilot 15811 26708
[2025-06-03 11:46:55] 2025-06-03 09:22:40,307 [wrapper] Test setup, not cleaning
[2025-06-03 11:46:55] 2025-06-03 09:22:40,360 [wrapper] apfmon messages muted
[2025-06-03 11:46:55] 2025-06-03 09:22:40,441 [wrapper] ==== wrapper stdout END ====
[2025-06-03 11:46:55] 2025-06-03 09:22:40,502 [wrapper] ==== wrapper stderr END ====
[2025-06-03 11:46:55]  *** Error codes and diagnostics ***
[2025-06-03 11:46:55]     "exeErrorCode": 0,
[2025-06-03 11:46:55]     "exeErrorDiag": "",
[2025-06-03 11:46:55]     "pilotErrorCode": 0,
[2025-06-03 11:46:55]     "pilotErrorDiag": "",
[2025-06-03 11:46:55]  *** Listing of results directory ***
[2025-06-03 11:46:55] total 387600
[2025-06-03 11:46:55] -rw-r--r--. 1 boinc boinc    495897 Jun  2 22:11 pilot3.tar.gz
[2025-06-03 11:46:55] -rw-r--r--. 1 boinc boinc      5111 Jun  2 22:34 queuedata.json
[2025-06-03 11:46:55] -rwx------. 1 boinc boinc     37140 Jun  2 22:34 runpilot2-wrapper.sh
[2025-06-03 11:46:55] -rw-r--r--. 1 boinc boinc       100 Jun  3 07:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 11:46:55] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 07:45 run_atlas
[2025-06-03 11:46:55] -rw-r--r--. 1 boinc boinc       105 Jun  3 07:45 job.xml
[2025-06-03 11:46:55] -rw-r--r--. 1 boinc boinc      6392 Jun  3 07:45 init_data.xml
[2025-06-03 11:46:55] -rw-r--r--. 2 boinc boinc 215261590 Jun  3 07:45 EVNT.45006593._000451.pool.root.1
[2025-06-03 11:46:55] -rw-r--r--. 2 boinc boinc     15093 Jun  3 07:45 start_atlas.sh
[2025-06-03 11:46:55] drwxrwx--x. 2 boinc boinc        68 Jun  3 07:45 shared
[2025-06-03 11:46:55] -rw-r--r--. 2 boinc boinc    508873 Jun  3 07:45 input.tar.gz
[2025-06-03 11:46:55] -rw-r--r--. 1 boinc boinc         0 Jun  3 07:45 boinc_lockfile
[2025-06-03 11:46:55] -rw-r--r--. 1 boinc boinc      2524 Jun  3 07:45 pandaJob.out
[2025-06-03 11:46:55] -rw-------. 1 boinc boinc    988073 Jun  3 07:46 agis_schedconf.cvmfs.json
[2025-06-03 11:46:55] drwx------. 4 boinc boinc      4096 Jun  3 07:46 pilot3
[2025-06-03 11:46:55] -rw-------. 1 boinc boinc 174777303 Jun  3 11:19 HITS.45006595._011276.pool.root.1
[2025-06-03 11:46:55] -rw-r--r--. 1 boinc boinc       531 Jun  3 11:19 boinc_task_state.xml
[2025-06-03 11:46:55] -rw-------. 1 boinc boinc      1013 Jun  3 11:20 memory_monitor_summary.json
[2025-06-03 11:46:55] -rw-------. 1 boinc boinc   1603667 Jun  3 11:20 agis_ddmendpoints.agis.ALL.json
[2025-06-03 11:46:55] -rw-------. 1 boinc boinc    389493 Jun  3 11:20 log.45006595._011276.job.log.tgz.1
[2025-06-03 11:46:55] -rw-------. 1 boinc boinc        95 Jun  3 11:21 pilot_heartbeat.json
[2025-06-03 11:46:55] -rw-------. 1 boinc boinc      7697 Jun  3 11:22 heartbeat.json
[2025-06-03 11:46:55] -rw-------. 1 boinc boinc      4809 Jun  3 11:22 pilotlog.txt
[2025-06-03 11:46:55] -rw-------. 1 boinc boinc   1123426 Jun  3 11:22 log.45006595._011276.job.log.1
[2025-06-03 11:46:55] -rw-------. 1 boinc boinc       357 Jun  3 11:22 output.list
[2025-06-03 11:46:55] -rw-r--r--. 1 boinc boinc       620 Jun  3 11:22 runtime_log
[2025-06-03 11:46:55] -rw-------. 1 boinc boinc   1536000 Jun  3 11:22 result.tar.gz
[2025-06-03 11:46:55] -rw-r--r--. 1 boinc boinc      8673 Jun  3 11:22 runtime_log.err
[2025-06-03 11:46:55] -rw-------. 1 boinc boinc       656 Jun  3 11:22 2xjLDm62Qg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmZZWKDmMtYpen.diag
[2025-06-03 11:46:55] -rw-r--r--. 1 boinc boinc      8192 Jun  3 11:46 boinc_mmap_file
[2025-06-03 11:46:55] -rw-r--r--. 1 boinc boinc        28 Jun  3 11:46 wrapper_checkpoint.txt
[2025-06-03 11:46:55] -rw-r--r--. 1 boinc boinc     20553 Jun  3 11:46 stderr.txt
[2025-06-03 11:46:55] HITS file was successfully produced:
[2025-06-03 11:46:55] -rw-------. 1 boinc boinc 174777303 Jun  3 11:19 shared/HITS.pool.root.1
[2025-06-03 11:46:55]  *** Contents of shared directory: ***
[2025-06-03 11:46:56] total 382920
[2025-06-03 11:46:56] -rw-r--r--. 2 boinc boinc 215261590 Jun  3 07:45 ATLAS.root_0
[2025-06-03 11:46:56] -rw-r--r--. 2 boinc boinc     15093 Jun  3 07:45 start_atlas.sh
[2025-06-03 11:46:56] -rw-r--r--. 2 boinc boinc    508873 Jun  3 07:45 input.tar.gz
[2025-06-03 11:46:56] -rw-------. 1 boinc boinc 174777303 Jun  3 11:19 HITS.pool.root.1
[2025-06-03 11:46:56] -rw-------. 1 boinc boinc   1536000 Jun  3 11:22 result.tar.gz
11:46:57 (20548): run_atlas exited; CPU time 48165.867737
11:46:57 (20548): called boinc_finish(0)

</stderr_txt>
]]>

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