Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-03 07:54:48 (12876): Detected: vboxwrapper 26206
2025-06-03 07:54:48 (12876): Detected: BOINC client v8.0.2
2025-06-03 07:54:49 (12876): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-06-03 07:54:49 (12876): Successfully copied 'init_data.xml' to the shared directory.
2025-06-03 07:54:50 (12876): Create VM. (boinc_00af023b81bfab06, slot#7)
2025-06-03 07:54:50 (12876): Setting Memory Size for VM. (4600MB)
2025-06-03 07:54:51 (12876): Setting CPU Count for VM. (6)
2025-06-03 07:54:51 (12876): Setting Chipset Options for VM.
2025-06-03 07:54:51 (12876): Setting Graphics Controller Options for VM.
2025-06-03 07:54:51 (12876): Setting Boot Options for VM.
2025-06-03 07:54:52 (12876): Setting Network Configuration for NAT.
2025-06-03 07:54:52 (12876): Enabling VM Network Access.
2025-06-03 07:54:52 (12876): Disabling USB Support for VM.
2025-06-03 07:54:52 (12876): Disabling COM Port Support for VM.
2025-06-03 07:54:53 (12876): Disabling LPT Port Support for VM.
2025-06-03 07:54:53 (12876): Disabling Audio Support for VM.
2025-06-03 07:54:53 (12876): Disabling Clipboard Support for VM.
2025-06-03 07:54:53 (12876): Disabling Drag and Drop Support for VM.
2025-06-03 07:54:54 (12876): Adding storage controller(s) to VM.
2025-06-03 07:54:54 (12876): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-03 07:54:57 (12876): Adding VirtualBox Guest Additions to VM.
2025-06-03 07:54:57 (12876): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-03 07:54:57 (12876): forwarding host port 60089 to guest port 80
2025-06-03 07:54:57 (12876): Enabling remote desktop for VM.
2025-06-03 07:54:58 (12876): Required extension pack not installed, remote desktop not enabled.
2025-06-03 07:54:58 (12876): Enabling shared directory for VM.
2025-06-03 07:54:58 (12876): Starting VM using VBoxManage interface. (boinc_00af023b81bfab06, slot#7)
2025-06-03 07:55:06 (12876): Successfully started VM. (PID = '7192')
2025-06-03 07:55:06 (12876): Reporting VM Process ID to BOINC.
2025-06-03 07:55:06 (12876): Guest Log: BIOS: VirtualBox 7.0.6
2025-06-03 07:55:06 (12876): Guest Log: CPUID EDX: 0x178bfbff
2025-06-03 07:55:06 (12876): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-03 07:55:06 (12876): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-03 07:55:06 (12876): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-03 07:55:06 (12876): Detected: Web Application Enabled (http://localhost:60089)
2025-06-03 07:55:06 (12876): Preference change detected
2025-06-03 07:55:06 (12876): Setting CPU throttle for VM. (100%)
2025-06-03 07:55:06 (12876): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-03 07:55:08 (12876): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-03 07:55:08 (12876): Guest Log: BIOS: Booting from Hard Disk...
2025-06-03 07:55:11 (12876): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-03 07:55:11 (12876): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-03 07:55:11 (12876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-03 07:55:11 (12876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-03 07:55:11 (12876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-03 07:55:11 (12876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-03 07:55:11 (12876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-03 07:55:11 (12876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-03 07:55:11 (12876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-03 07:55:11 (12876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-03 07:55:11 (12876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-03 07:55:11 (12876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-03 07:55:11 (12876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-03 07:55:11 (12876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-03 07:55:11 (12876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-03 07:55:11 (12876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-03 07:55:11 (12876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-03 07:55:11 (12876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-03 07:55:11 (12876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-03 07:55:11 (12876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-03 07:55:11 (12876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-03 07:55:11 (12876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-03 07:55:11 (12876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-03 07:55:11 (12876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-03 07:55:11 (12876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-03 07:55:11 (12876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-03 07:55:11 (12876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-03 07:55:11 (12876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-03 07:55:11 (12876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-03 07:55:11 (12876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-03 07:55:11 (12876): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-03 07:55:11 (12876): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-03 07:55:19 (12876): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-03 07:55:19 (12876): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-03 07:55:24 (12876): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-03 07:55:24 (12876): Guest Log: 00:00:00.000188 main     Log opened 2025-06-03T07:55:22.311811000Z
2025-06-03 07:55:24 (12876): Guest Log: 00:00:00.000258 main     OS Product: Linux
2025-06-03 07:55:24 (12876): Guest Log: 00:00:00.000279 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-03 07:55:24 (12876): Guest Log: 00:00:00.000296 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-03 07:55:24 (12876): Guest Log: 00:00:00.000313 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-03 07:55:24 (12876): Guest Log: 00:00:00.000313 main     Process ID: 1332
2025-06-03 07:55:24 (12876): Guest Log: 00:00:00.000313 main     Package type: LINUX_64BITS_GENERIC
2025-06-03 07:55:24 (12876): Guest Log: 00:00:00.000782 main     5.2.32 r132073 started. Verbose level = 0
2025-06-03 07:55:24 (12876): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-03 07:55:24 (12876): Guest Log: [INFO] Mounting shared directory
2025-06-03 07:55:24 (12876): Guest Log: [INFO] Checking for init_data.xml
2025-06-03 07:55:34 (12876): Guest Log: 00:00:10.002562 timesync vgsvcTimeSyncWorker: Radical guest time change: -25 188 209 014 000ns (GuestNow=1 748 912 134 104 562 000 ns GuestLast=1 748 937 322 313 576 000 ns fSetTimeLastLoop=true )
2025-06-03 07:55:48 (12876): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-03 07:55:48 (12876): Guest Log: [INFO] Detected branch: prod
2025-06-03 07:55:48 (12876): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-03 07:55:48 (12876): Guest Log: Copying input files
2025-06-03 07:55:49 (12876): Guest Log: Copied input files into RunAtlas.
2025-06-03 07:55:49 (12876): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-03 07:55:49 (12876): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-03 07:55:49 (12876): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-03 07:55:49 (12876): Guest Log: Further information can be found at the LHC@home message board.
2025-06-03 07:56:16 (12876): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-03 07:56:17 (12876): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-03 07:56:17 (12876): Guest Log: 2.6.3.0 1613 0 32204 146723 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-06-03 07:56:17 (12876): Guest Log: copied the webapp to /var/www
2025-06-03 07:56:17 (12876): Guest Log: ATHENA_PROC_NUMBER=6
2025-06-03 07:56:17 (12876): Guest Log: ATHENA_CORE_NUMBER=6
2025-06-03 07:56:18 (12876): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-03 07:56:18 (12876): Guest Log:  *** Starting ATLAS job. (PandaID=6677398979 taskID=45006595) ***
2025-06-03 09:21:32 (12876): Guest Log:  *** Job finished ***
2025-06-03 09:21:32 (12876): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-03 09:21:32 (12876): Guest Log: 2025-06-03 02:21:19,854 | INFO     | [data] queue_monitor thread has finished
2025-06-03 09:21:32 (12876): Guest Log: 2025-06-03 02:21:23,072 | INFO     | job.realtimelogging is not enabled
2025-06-03 09:21:32 (12876): Guest Log: 2025-06-03 02:21:24,073 | INFO     | [payload] run_realtimelog thread has finished
2025-06-03 09:21:32 (12876): Guest Log: 2025-06-03 02:21:24,404 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140418510071616)>', '<ExcThread(monitor, started 140417731368704)>']
2025-06-03 09:21:32 (12876): Guest Log: 2025-06-03 02:21:25,074 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-03 09:21:32 (12876): Guest Log: 2025-06-03 02:21:25,074 | INFO     | [monitor] control thread has ended
2025-06-03 09:21:32 (12876): Guest Log: 2025-06-03 02:21:29,418 | INFO     | all workflow threads have been joined
2025-06-03 09:21:32 (12876): Guest Log: 2025-06-03 02:21:29,418 | INFO     | end of generic workflow (traces error code: 0)
2025-06-03 09:21:32 (12876): Guest Log: 2025-06-03 02:21:29,418 | INFO     | traces error code: 0
2025-06-03 09:21:32 (12876): Guest Log: 2025-06-03 02:21:29,418 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-03 09:21:32 (12876): Guest Log: 2025-06-03 02:21:29,484 [wrapper] ==== pilot stdout END ====
2025-06-03 09:21:32 (12876): Guest Log: 2025-06-03 02:21:29,488 [wrapper] ==== wrapper stdout RESUME ====
2025-06-03 09:21:32 (12876): Guest Log: 2025-06-03 02:21:29,491 [wrapper] pilotpid: 5958
2025-06-03 09:21:32 (12876): Guest Log: 2025-06-03 02:21:29,496 [wrapper] Pilot exit status: 0
2025-06-03 09:21:32 (12876): Guest Log: 2025-06-03 02:21:29,688 [wrapper] pandaids: 6677398979
2025-06-03 09:21:32 (12876): Guest Log: 2025-06-03 02:21:29,714 [wrapper] cleanup supervisor_pilot   862 5959
2025-06-03 09:21:32 (12876): Guest Log: 2025-06-03 02:21:29,719 [wrapper] Test setup, not cleaning
2025-06-03 09:21:32 (12876): Guest Log: 2025-06-03 02:21:29,724 [wrapper] apfmon messages muted
2025-06-03 09:21:32 (12876): Guest Log: 2025-06-03 02:21:29,728 [wrapper] ==== wrapper stdout END ====
2025-06-03 09:21:32 (12876): Guest Log: 2025-06-03 02:21:29,733 [wrapper] ==== wrapper stderr END ====
2025-06-03 09:21:32 (12876): Guest Log:  *** Error codes and diagnostics ***
2025-06-03 09:21:32 (12876): Guest Log:     "exeErrorCode": 0,
2025-06-03 09:21:32 (12876): Guest Log:     "exeErrorDiag": "",
2025-06-03 09:21:32 (12876): Guest Log:     "pilotErrorCode": 0,
2025-06-03 09:21:32 (12876): Guest Log:     "pilotErrorDiag": "",
2025-06-03 09:21:32 (12876): Guest Log:  *** Listing of results directory ***
2025-06-03 09:21:32 (12876): Guest Log: total 176492
2025-06-03 09:21:32 (12876): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  2 20:11 pilot3.tar.gz
2025-06-03 09:21:32 (12876): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  2 20:28 queuedata.json
2025-06-03 09:21:32 (12876): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  2 20:28 runpilot2-wrapper.sh
2025-06-03 09:21:32 (12876): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  3 00:55 start_atlas.sh
2025-06-03 09:21:32 (12876): Guest Log: -rwxr-xr-x. 1 atlas atlas    508876 Jun  3 00:55 input.tar.gz
2025-06-03 09:21:32 (12876): Guest Log: -rwxr-xr-x. 1 atlas atlas      8953 Jun  3 00:55 init_data.xml
2025-06-03 09:21:32 (12876): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  3 00:55 EVNT.45006593._000443.pool.root.1 -> /data/./ATLAS.root_0
2025-06-03 09:21:32 (12876): Guest Log: -rw-r--r--. 1 atlas atlas      2524 Jun  3 00:56 pandaJob.out
2025-06-03 09:21:32 (12876): Guest Log: -rw-------. 1 atlas atlas    988081 Jun  3 00:57 agis_schedconf.cvmfs.json
2025-06-03 09:21:32 (12876): Guest Log: -rw-------. 1 atlas atlas   1603667 Jun  3 00:57 agis_ddmendpoints.agis.ALL.json
2025-06-03 09:21:32 (12876): Guest Log: drwx------. 4 atlas atlas      4096 Jun  3 00:57 pilot3
2025-06-03 09:21:32 (12876): Guest Log: -rw-------. 1 atlas atlas        95 Jun  3 02:20 pilot_heartbeat.json
2025-06-03 09:21:32 (12876): Guest Log: -rw-------. 1 atlas atlas 175499611 Jun  3 02:20 HITS.45006595._011066.pool.root.1
2025-06-03 09:21:32 (12876): Guest Log: -rw-------. 1 atlas atlas      1024 Jun  3 02:20 memory_monitor_summary.json
2025-06-03 09:21:32 (12876): Guest Log: -rw-------. 1 atlas atlas    275042 Jun  3 02:20 log.45006595._011066.job.log.tgz.1
2025-06-03 09:21:32 (12876): Guest Log: -rw-------. 1 atlas atlas      7713 Jun  3 02:21 heartbeat.json
2025-06-03 09:21:32 (12876): Guest Log: -rw-------. 1 atlas atlas      4485 Jun  3 02:21 pilotlog.txt
2025-06-03 09:21:32 (12876): Guest Log: -rw-------. 1 atlas atlas    453578 Jun  3 02:21 log.45006595._011066.job.log.1
2025-06-03 09:21:32 (12876): Guest Log: -rw-------. 1 atlas atlas       357 Jun  3 02:21 output.list
2025-06-03 09:21:32 (12876): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  3 02:21 runtime_log
2025-06-03 09:21:32 (12876): Guest Log: -rw-------. 1 atlas atlas    747520 Jun  3 02:21 result.tar.gz
2025-06-03 09:21:32 (12876): Guest Log: -rw-------. 1 atlas atlas       664 Jun  3 02:21 Vg6NDm2wQg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFZgKDmQOkuTm.diag
2025-06-03 09:21:32 (12876): Guest Log: -rw-r--r--. 1 atlas atlas      8628 Jun  3 02:21 runtime_log.err
2025-06-03 09:21:32 (12876): Guest Log: Looking for outputfile HITS.45006595._011066.pool.root.1
2025-06-03 09:21:32 (12876): Guest Log: HITS file was successfully produced
2025-06-03 09:21:32 (12876): Guest Log: -rw-------. 1 atlas atlas 175499611 Jun  3 02:20 /home/atlas/RunAtlas/HITS.45006595._011066.pool.root.1
2025-06-03 09:21:33 (12876): Guest Log: Successfully finished the ATLAS job!
2025-06-03 09:21:33 (12876): Guest Log: Copying the results back to the shared directory!
2025-06-03 09:21:33 (12876): Guest Log:  *** Contents of shared directory: ***
2025-06-03 09:21:33 (12876): Guest Log: total 384252
2025-06-03 09:21:33 (12876): Guest Log: -rwxrwxrwx. 1 root root 216678425 Jun  3 00:54 ATLAS.root_0
2025-06-03 09:21:33 (12876): Guest Log: -rwxrwxrwx. 1 root root 175499611 Jun  3  2025 HITS.pool.root.1
2025-06-03 09:21:33 (12876): Guest Log: -rwxrwxrwx. 1 root root      8953 Jun  3 00:54 init_data.xml
2025-06-03 09:21:33 (12876): Guest Log: -rwxrwxrwx. 1 root root    508876 Jun  3 00:30 input.tar.gz
2025-06-03 09:21:33 (12876): Guest Log: -rwxrwxrwx. 1 root root    747520 Jun  3  2025 result.tar.gz
2025-06-03 09:21:33 (12876): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  3 00:30 start_atlas.sh
2025-06-03 09:21:33 (12876): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-03 09:21:33 (12876): VM Completion File Detected.
2025-06-03 09:21:33 (12876): Powering off VM.
2025-06-03 09:21:34 (12876): Successfully stopped VM.
2025-06-03 09:21:34 (12876): Deregistering VM. (boinc_00af023b81bfab06, slot#7)
2025-06-03 09:21:34 (12876): Removing network bandwidth throttle group from VM.
2025-06-03 09:21:34 (12876): Removing VM from VirtualBox.
09:21:40 (12876): called boinc_finish(0)

</stderr_txt>
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