Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:06:16 (2663): wrapper (7.7.26015): starting
11:06:16 (2663): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 11:06:16] Arguments: --nthreads 8
[2025-06-03 11:06:16] Threads: 8
[2025-06-03 11:06:16] Checking for CVMFS
[2025-06-03 11:06:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 11:06:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 11:06:17] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 11:06:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 11:06:19] 2.11.2.0 5987 31554 93820 146735 2 59 20608420 25165825 4632 130560 0 16270569 99.799 17369893 2051 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 11:06:19] CVMFS is ok
[2025-06-03 11:06:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 11:06:19] Checking for apptainer binary...
[2025-06-03 11:06:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 11:06:19] Running /usr/bin/apptainer --version
[2025-06-03 11:06:19] apptainer version 1.3.2-1.el7
[2025-06-03 11:06:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 13:02:08] cg-vwn288.simple-grid.lan
[2025-06-03 13:02:08] apptainer works
[2025-06-03 13:02:08] Set ATHENA_PROC_NUMBER=8
[2025-06-03 13:02:08] Set ATHENA_CORE_NUMBER=8
[2025-06-03 13:02:08] Starting ATLAS job with PandaID=6677398984
[2025-06-03 13:02:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 16:42:45]  *** The last 200 lines of the pilot log: ***
[2025-06-03 16:42:45] 2025-06-03 14:35:35,117 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6677398984/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 16:42:45] 2025-06-03 14:35:35,118 | INFO     | extracted standard info from prmon json
[2025-06-03 16:42:45] 2025-06-03 14:35:35,118 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 16:42:45] 2025-06-03 14:35:35,119 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 16:42:45] 2025-06-03 14:35:35,119 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 16:42:45] 2025-06-03 14:35:35,119 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 16:42:45] 2025-06-03 14:35:35,124 | INFO     | fitting pss+swap vs Time
[2025-06-03 16:42:45] 2025-06-03 14:35:35,125 | INFO     | sum of square deviations: 2790348132.0
[2025-06-03 16:42:45] 2025-06-03 14:35:35,127 | INFO     | sum of deviations: 12001111421.5
[2025-06-03 16:42:45] 2025-06-03 14:35:35,127 | INFO     | mean x: 1748954917.5
[2025-06-03 16:42:45] 2025-06-03 14:35:35,127 | INFO     | mean y: 2462012.735576923
[2025-06-03 16:42:45] 2025-06-03 14:35:35,127 | INFO     | -- intersect: -7519682839.151973
[2025-06-03 16:42:45] 2025-06-03 14:35:35,127 | INFO     | intersect: -7519682839.151973
[2025-06-03 16:42:45] 2025-06-03 14:35:35,128 | INFO     | chi2: 2.6023557960398858
[2025-06-03 16:42:45] 2025-06-03 14:35:35,128 | INFO     | sum of square deviations: 2593916542.0
[2025-06-03 16:42:45] 2025-06-03 14:35:35,130 | INFO     | sum of deviations: 25292436953.999992
[2025-06-03 16:42:45] 2025-06-03 14:35:35,130 | INFO     | mean x: 1748954765.0
[2025-06-03 16:42:45] 2025-06-03 14:35:35,130 | INFO     | mean y: 2472124.7044334975
[2025-06-03 16:42:45] 2025-06-03 14:35:35,130 | INFO     | -- intersect: -17051017227.367546
[2025-06-03 16:42:45] 2025-06-03 14:35:35,130 | INFO     | intersect: -17051017227.367546
[2025-06-03 16:42:45] 2025-06-03 14:35:35,131 | INFO     | chi2: 1.836229645706193
[2025-06-03 16:42:45] 2025-06-03 14:35:35,131 | INFO     | current chi2=1.836229645706193 (change=29.439715795186004 %)
[2025-06-03 16:42:45] 2025-06-03 14:35:35,131 | INFO     | sum of square deviations: 2406926989.5
[2025-06-03 16:42:45] 2025-06-03 14:35:35,133 | INFO     | sum of deviations: 24657414113.50001
[2025-06-03 16:42:45] 2025-06-03 14:35:35,133 | INFO     | mean x: 1748954612.5
[2025-06-03 16:42:45] 2025-06-03 14:35:35,133 | INFO     | mean y: 2471606.621212121
[2025-06-03 16:42:45] 2025-06-03 14:35:35,140 | INFO     | -- intersect: -17914440013.15621
[2025-06-03 16:42:45] 2025-06-03 14:35:35,141 | INFO     | intersect: -17914440013.15621
[2025-06-03 16:42:45] 2025-06-03 14:35:35,141 | INFO     | chi2: 1.8377294550642538
[2025-06-03 16:42:45] 2025-06-03 14:35:35,142 | INFO     | current chi2=1.8377294550642538 (change=-0.08167874653194052 %)
[2025-06-03 16:42:45] 2025-06-03 14:35:35,142 | INFO     | right removable region: 197
[2025-06-03 16:42:45] 2025-06-03 14:35:35,142 | INFO     | sum of square deviations: 2593916542.0
[2025-06-03 16:42:45] 2025-06-03 14:35:35,144 | INFO     | sum of deviations: -25444590291.000004
[2025-06-03 16:42:45] 2025-06-03 14:35:35,144 | INFO     | mean x: 1748955070.0
[2025-06-03 16:42:45] 2025-06-03 14:35:35,144 | INFO     | mean y: 2490828.433497537
[2025-06-03 16:42:45] 2025-06-03 14:35:35,144 | INFO     | -- intersect: 17158572943.24397
[2025-06-03 16:42:45] 2025-06-03 14:35:35,144 | INFO     | intersect: 17158572943.24397
[2025-06-03 16:42:45] 2025-06-03 14:35:35,145 | INFO     | chi2: 0.8863467947315137
[2025-06-03 16:42:45] 2025-06-03 14:35:35,145 | INFO     | current chi2=0.8863467947315137 (change=65.94059904951102 %)
[2025-06-03 16:42:45] 2025-06-03 14:35:35,145 | INFO     | sum of square deviations: 2406926989.5
[2025-06-03 16:42:45] 2025-06-03 14:35:35,147 | INFO     | sum of deviations: -22456069324.0
[2025-06-03 16:42:45] 2025-06-03 14:35:35,147 | INFO     | mean x: 1748955222.5
[2025-06-03 16:42:45] 2025-06-03 14:35:35,147 | INFO     | mean y: 2488346.383838384
[2025-06-03 16:42:45] 2025-06-03 14:35:35,148 | INFO     | -- intersect: 16319834029.225061
[2025-06-03 16:42:45] 2025-06-03 14:35:35,148 | INFO     | intersect: 16319834029.225061
[2025-06-03 16:42:45] 2025-06-03 14:35:35,148 | INFO     | chi2: 0.8686021707052805
[2025-06-03 16:42:45] 2025-06-03 14:35:35,148 | INFO     | current chi2=0.8686021707052805 (change=2.0019956219967274 %)
[2025-06-03 16:42:45] 2025-06-03 14:35:35,148 | INFO     | left removable region: 20
[2025-06-03 16:42:45] 2025-06-03 14:35:35,149 | INFO     | sum of square deviations: 1719429448.0
[2025-06-03 16:42:45] 2025-06-03 14:35:35,150 | INFO     | sum of deviations: 2195290631.0
[2025-06-03 16:42:45] 2025-06-03 14:35:35,150 | INFO     | mean x: 1748955192.0
[2025-06-03 16:42:45] 2025-06-03 14:35:35,150 | INFO     | mean y: 2489176.5536723165
[2025-06-03 16:42:45] 2025-06-03 14:35:35,151 | INFO     | -- intersect: -2230498604.0745945
[2025-06-03 16:42:45] 2025-06-03 14:35:35,151 | INFO     | intersect: -2230498604.0745945
[2025-06-03 16:42:45] 2025-06-03 14:35:35,151 | INFO     | chi2: 0.00043632766534203843
[2025-06-03 16:42:45] 2025-06-03 14:35:35,151 | INFO     | -- intersect: -2230498604.0745945
[2025-06-03 16:42:45] 2025-06-03 14:35:35,151 | INFO     | current memory leak: 1.28 B/s (using 177 data points, chi2=0.00)
[2025-06-03 16:42:45] 2025-06-03 14:35:35,152 | INFO     | ..............................
[2025-06-03 16:42:45] 2025-06-03 14:35:35,152 | INFO     | . Timing measurements:
[2025-06-03 16:42:45] 2025-06-03 14:35:35,153 | INFO     | . get job = 0 s
[2025-06-03 16:42:45] 2025-06-03 14:35:35,153 | INFO     | . initial setup = 2 s
[2025-06-03 16:42:45] 2025-06-03 14:35:35,153 | INFO     | . payload setup = 13 s
[2025-06-03 16:42:45] 2025-06-03 14:35:35,153 | INFO     | . stage-in = 0 s
[2025-06-03 16:42:45] 2025-06-03 14:35:35,153 | INFO     | . payload execution = 12664 s
[2025-06-03 16:42:45] 2025-06-03 14:35:35,153 | INFO     | . stage-out = 3 s
[2025-06-03 16:42:45] 2025-06-03 14:35:35,153 | INFO     | . log creation = 0 s
[2025-06-03 16:42:45] 2025-06-03 14:35:35,153 | INFO     | ..............................
[2025-06-03 16:42:45] 2025-06-03 14:35:35,290 | INFO     | 
[2025-06-03 16:42:45] 2025-06-03 14:35:35,291 | INFO     | job summary report
[2025-06-03 16:42:45] 2025-06-03 14:35:35,291 | INFO     | --------------------------------------------------
[2025-06-03 16:42:45] 2025-06-03 14:35:35,291 | INFO     | PanDA job id: 6677398984
[2025-06-03 16:42:45] 2025-06-03 14:35:35,291 | INFO     | task id: 45006595
[2025-06-03 16:42:45] 2025-06-03 14:35:35,291 | INFO     | errors: (none)
[2025-06-03 16:42:45] 2025-06-03 14:35:35,291 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 16:42:45] 2025-06-03 14:35:35,291 | INFO     | pilot state: finished 
[2025-06-03 16:42:45] 2025-06-03 14:35:35,291 | INFO     | transexitcode: 0
[2025-06-03 16:42:45] 2025-06-03 14:35:35,291 | INFO     | exeerrorcode: 0
[2025-06-03 16:42:45] 2025-06-03 14:35:35,291 | INFO     | exeerrordiag: 
[2025-06-03 16:42:45] 2025-06-03 14:35:35,292 | INFO     | exitcode: 0
[2025-06-03 16:42:45] 2025-06-03 14:35:35,292 | INFO     | exitmsg: OK
[2025-06-03 16:42:45] 2025-06-03 14:35:35,292 | INFO     | cpuconsumptiontime: 47542 s
[2025-06-03 16:42:45] 2025-06-03 14:35:35,292 | INFO     | nevents: 400
[2025-06-03 16:42:45] 2025-06-03 14:35:35,292 | INFO     | neventsw: 0
[2025-06-03 16:42:45] 2025-06-03 14:35:35,292 | INFO     | pid: 15454
[2025-06-03 16:42:45] 2025-06-03 14:35:35,292 | INFO     | pgrp: 15454
[2025-06-03 16:42:45] 2025-06-03 14:35:35,292 | INFO     | corecount: 8
[2025-06-03 16:42:45] 2025-06-03 14:35:35,292 | INFO     | event service: False
[2025-06-03 16:42:45] 2025-06-03 14:35:35,292 | INFO     | sizes: {0: 2405011, 1: 2405210, 11: 2405416, 12: 2405444, 12682: 2434570, 12685: 2443539, 12687: 2443723, 12766: 2443893}
[2025-06-03 16:42:45] 2025-06-03 14:35:35,293 | INFO     | --------------------------------------------------
[2025-06-03 16:42:45] 2025-06-03 14:35:35,293 | INFO     | 
[2025-06-03 16:42:45] 2025-06-03 14:35:35,293 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-03 16:42:45] 2025-06-03 14:35:35,597 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 16:42:45] 2025-06-03 14:35:35,597 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 16:42:45] 2025-06-03 14:35:35,597 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 16:42:45] 2025-06-03 14:35:35,597 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 16:42:45] 2025-06-03 14:35:35,597 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 16:42:45] 2025-06-03 14:35:35,597 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 16:42:45] 2025-06-03 14:35:35,598 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 16:42:45] 2025-06-03 14:35:35,598 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 16:42:45] 2025-06-03 14:35:35,598 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 16:42:45] 2025-06-03 14:35:35,598 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 16:42:45] 2025-06-03 14:35:35,598 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 16:42:45] 2025-06-03 14:35:35,598 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 16:42:45] 2025-06-03 14:35:35,598 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 16:42:45] 2025-06-03 14:35:35,599 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 16:42:45] 2025-06-03 14:35:35,599 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 16:42:45] 2025-06-03 14:35:35,599 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 16:42:45] 2025-06-03 14:35:35,599 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 16:42:45] 2025-06-03 14:35:35,599 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 16:42:45] 2025-06-03 14:35:35,599 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 16:42:45] 2025-06-03 14:35:35,599 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 16:42:45] 2025-06-03 14:35:35,599 | INFO     | job 6677398984 has completed (purged errors)
[2025-06-03 16:42:45] 2025-06-03 14:35:35,600 | INFO     | overall cleanup function is called
[2025-06-03 16:42:45] 2025-06-03 14:35:36,608 | INFO     | --- collectZombieJob: --- 10, [15454]
[2025-06-03 16:42:45] 2025-06-03 14:35:36,609 | INFO     | zombie collector waiting for pid 15454
[2025-06-03 16:42:45] 2025-06-03 14:35:36,609 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 16:42:45] 2025-06-03 14:35:36,609 | INFO     | collected zombie processes
[2025-06-03 16:42:45] 2025-06-03 14:35:36,609 | INFO     | will attempt to kill all subprocesses of pid=15454
[2025-06-03 16:42:45] 2025-06-03 14:35:36,740 | INFO     | process IDs to be killed: [15454] (in reverse order)
[2025-06-03 16:42:45] 2025-06-03 14:35:37,537 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 16:42:45] 2025-06-03 14:35:37,538 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 16:42:45] 2025-06-03 14:35:37,541 | INFO     | did not find any defunct processes belonging to 15454
[2025-06-03 16:42:45] 2025-06-03 14:35:37,545 | INFO     | did not find any defunct processes belonging to 15454
[2025-06-03 16:42:45] 2025-06-03 14:35:37,545 | INFO     | ready for new job
[2025-06-03 16:42:45] 2025-06-03 14:35:37,545 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 16:42:45] 2025-06-03 14:35:37,547 | INFO     | **************************************
[2025-06-03 16:42:45] 2025-06-03 14:35:37,547 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 16:42:45] 2025-06-03 14:35:37,547 | INFO     | **************************************
[2025-06-03 16:42:45] 2025-06-03 14:35:37,547 | INFO     | 
[2025-06-03 16:42:45] 2025-06-03 14:35:37,548 | INFO     | pilot is running in a VM
[2025-06-03 16:42:45] 2025-06-03 14:35:37,548 | INFO     | architecture information:
[2025-06-03 16:42:45] 2025-06-03 14:35:37,565 | INFO     | executing command: cat /etc/os-release
[2025-06-03 16:42:45] 2025-06-03 14:35:37,771 | INFO     | cat /etc/os-release:
[2025-06-03 16:42:45] NAME="CentOS Linux"
[2025-06-03 16:42:45] VERSION="7 (Core)"
[2025-06-03 16:42:45] ID="centos"
[2025-06-03 16:42:45] ID_LIKE="rhel fedora"
[2025-06-03 16:42:45] VERSION_ID="7"
[2025-06-03 16:42:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 16:42:45] ANSI_COLOR="0;31"
[2025-06-03 16:42:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 16:42:45] HOME_URL="https://www.centos.org/"
[2025-06-03 16:42:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 16:42:45] 
[2025-06-03 16:42:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 16:42:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 16:42:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 16:42:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 16:42:45] 
[2025-06-03 16:42:45] 2025-06-03 14:35:37,772 | INFO     | **************************************
[2025-06-03 16:42:45] 2025-06-03 14:35:38,275 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-03 16:42:45] 2025-06-03 14:35:38,577 | INFO     | sufficient remaining disk space (496576233472 B)
[2025-06-03 16:42:45] 2025-06-03 14:35:38,578 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 16:42:45] 2025-06-03 14:35:38,578 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 16:42:45] 2025-06-03 14:35:38,578 | INFO     | update_server=False
[2025-06-03 16:42:45] 2025-06-03 14:35:38,578 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 16:42:45] 2025-06-03 14:35:38,578 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 16:42:45] 2025-06-03 14:35:38,579 | INFO     | aborting loop
[2025-06-03 16:42:45] 2025-06-03 14:35:38,584 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 16:42:45] 2025-06-03 14:35:38,723 | INFO     | all job control threads have been joined
[2025-06-03 16:42:45] 2025-06-03 14:35:39,029 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 16:42:45] 2025-06-03 14:35:39,030 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 16:42:45] 2025-06-03 14:35:39,030 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 16:42:45] 2025-06-03 14:35:39,098 | INFO     | all data control threads have been joined
[2025-06-03 16:42:45] 2025-06-03 14:35:39,581 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 16:42:45] 2025-06-03 14:35:39,584 | INFO     | [job] retrieve thread has finished
[2025-06-03 16:42:45] 2025-06-03 14:35:39,588 | INFO     | [job] job monitor thread has finished
[2025-06-03 16:42:45] 2025-06-03 14:35:39,658 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 16:42:45] 2025-06-03 14:35:39,730 | INFO     | [job] control thread has finished
[2025-06-03 16:42:45] 2025-06-03 14:35:39,959 | INFO     | all payload control threads have been joined
[2025-06-03 16:42:45] 2025-06-03 14:35:40,106 | INFO     | [data] control thread has finished
[2025-06-03 16:42:45] 2025-06-03 14:35:40,193 | INFO     | [payload] failed_post thread has finished
[2025-06-03 16:42:45] 2025-06-03 14:35:40,306 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 16:42:45] 2025-06-03 14:35:40,317 | INFO     | [data] copytool_in thread has finished
[2025-06-03 16:42:45] 2025-06-03 14:35:40,378 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 16:42:45] 2025-06-03 14:35:40,544 | INFO     | [job] validate thread has finished
[2025-06-03 16:42:45] 2025-06-03 14:35:40,590 | INFO     | [data] copytool_out thread has finished
[2025-06-03 16:42:45] 2025-06-03 14:35:40,819 | INFO     | [payload] validate_post thread has finished
[2025-06-03 16:42:45] 2025-06-03 14:35:40,893 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 16:42:45] 2025-06-03 14:35:40,966 | INFO     | [payload] control thread has finished
[2025-06-03 16:42:45] 2025-06-03 14:35:41,074 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 16:42:45] 2025-06-03 14:35:41,313 | INFO     | [job] queue monitor thread has finished
[2025-06-03 16:42:45] 2025-06-03 14:35:43,590 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 16:42:45] 2025-06-03 14:35:45,018 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140339273975616)>', '<ExcThread(monitor, started 140338719090432)>']
[2025-06-03 16:42:45] 2025-06-03 14:35:45,065 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 16:42:45] 2025-06-03 14:35:45,066 | INFO     | [monitor] control thread has ended
[2025-06-03 16:42:45] 2025-06-03 14:35:50,043 | INFO     | all workflow threads have been joined
[2025-06-03 16:42:45] 2025-06-03 14:35:50,044 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 16:42:45] 2025-06-03 14:35:50,044 | INFO     | traces error code: 0
[2025-06-03 16:42:45] 2025-06-03 14:35:50,044 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 16:42:45] 2025-06-03 14:35:50,295 [wrapper] ==== pilot stdout END ====
[2025-06-03 16:42:45] 2025-06-03 14:35:50,299 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 16:42:45] 2025-06-03 14:35:50,302 [wrapper] pilotpid: 6914
[2025-06-03 16:42:45] 2025-06-03 14:35:50,309 [wrapper] Pilot exit status: 0
[2025-06-03 16:42:45] 2025-06-03 14:35:50,760 [wrapper] pandaids: 6677398984
[2025-06-03 16:42:45] 2025-06-03 14:35:51,416 [wrapper] cleanup supervisor_pilot  4607 6915
[2025-06-03 16:42:45] 2025-06-03 14:35:51,466 [wrapper] Test setup, not cleaning
[2025-06-03 16:42:45] 2025-06-03 14:35:51,557 [wrapper] apfmon messages muted
[2025-06-03 16:42:45] 2025-06-03 14:35:51,666 [wrapper] ==== wrapper stdout END ====
[2025-06-03 16:42:45] 2025-06-03 14:35:51,801 [wrapper] ==== wrapper stderr END ====
[2025-06-03 16:42:45]  *** Error codes and diagnostics ***
[2025-06-03 16:42:45]     "exeErrorCode": 0,
[2025-06-03 16:42:45]     "exeErrorDiag": "",
[2025-06-03 16:42:45]     "pilotErrorCode": 0,
[2025-06-03 16:42:45]     "pilotErrorDiag": "",
[2025-06-03 16:42:45]  *** Listing of results directory ***
[2025-06-03 16:42:45] total 388732
[2025-06-03 16:42:45] -rw-r--r--. 1 boinc boinc    495897 Jun  2 22:11 pilot3.tar.gz
[2025-06-03 16:42:45] -rw-r--r--. 1 boinc boinc      5111 Jun  2 22:28 queuedata.json
[2025-06-03 16:42:45] -rwx------. 1 boinc boinc     37140 Jun  2 22:28 runpilot2-wrapper.sh
[2025-06-03 16:42:45] -rw-r--r--. 1 boinc boinc       100 Jun  3 11:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 16:42:45] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 11:06 run_atlas
[2025-06-03 16:42:45] -rw-r--r--. 1 boinc boinc       105 Jun  3 11:06 job.xml
[2025-06-03 16:42:45] -rw-r--r--. 2 boinc boinc 216678425 Jun  3 11:06 EVNT.45006593._000443.pool.root.1
[2025-06-03 16:42:45] -rw-r--r--. 2 boinc boinc     15093 Jun  3 11:06 start_atlas.sh
[2025-06-03 16:42:45] drwxrwx--x. 2 boinc boinc        68 Jun  3 11:06 shared
[2025-06-03 16:42:45] -rw-r--r--. 2 boinc boinc    508882 Jun  3 11:06 input.tar.gz
[2025-06-03 16:42:45] -rw-r--r--. 1 boinc boinc      6391 Jun  3 11:06 init_data.xml
[2025-06-03 16:42:45] -rw-r--r--. 1 boinc boinc         0 Jun  3 11:06 boinc_lockfile
[2025-06-03 16:42:45] -rw-r--r--. 1 boinc boinc      2524 Jun  3 13:02 pandaJob.out
[2025-06-03 16:42:45] -rw-------. 1 boinc boinc    985490 Jun  3 13:02 agis_schedconf.cvmfs.json
[2025-06-03 16:42:45] drwx------. 4 boinc boinc      4096 Jun  3 13:02 pilot3
[2025-06-03 16:42:45] -rw-------. 1 boinc boinc 174586573 Jun  3 16:33 HITS.45006595._011071.pool.root.1
[2025-06-03 16:42:45] -rw-r--r--. 1 boinc boinc       530 Jun  3 16:33 boinc_task_state.xml
[2025-06-03 16:42:45] -rw-------. 1 boinc boinc      1020 Jun  3 16:34 memory_monitor_summary.json
[2025-06-03 16:42:45] -rw-------. 1 boinc boinc   1603667 Jun  3 16:34 agis_ddmendpoints.agis.ALL.json
[2025-06-03 16:42:45] -rw-------. 1 boinc boinc    380802 Jun  3 16:34 log.45006595._011071.job.log.tgz.1
[2025-06-03 16:42:45] -rw-------. 1 boinc boinc      7686 Jun  3 16:35 heartbeat.json
[2025-06-03 16:42:45] -rw-------. 1 boinc boinc        95 Jun  3 16:35 pilot_heartbeat.json
[2025-06-03 16:42:45] -rw-------. 1 boinc boinc      4416 Jun  3 16:35 pilotlog.txt
[2025-06-03 16:42:45] -rw-------. 1 boinc boinc   1108595 Jun  3 16:35 log.45006595._011071.job.log.1
[2025-06-03 16:42:45] -rw-------. 1 boinc boinc       357 Jun  3 16:35 output.list
[2025-06-03 16:42:45] -rw-r--r--. 1 boinc boinc       620 Jun  3 16:35 runtime_log
[2025-06-03 16:42:45] -rw-------. 1 boinc boinc   1505280 Jun  3 16:35 result.tar.gz
[2025-06-03 16:42:45] -rw-r--r--. 1 boinc boinc      8659 Jun  3 16:35 runtime_log.err
[2025-06-03 16:42:45] -rw-------. 1 boinc boinc       656 Jun  3 16:35 djDODm2wQg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmKZgKDm0UNZWm.diag
[2025-06-03 16:42:45] -rw-r--r--. 1 boinc boinc      8192 Jun  3 16:42 boinc_mmap_file
[2025-06-03 16:42:45] -rw-r--r--. 1 boinc boinc        28 Jun  3 16:42 wrapper_checkpoint.txt
[2025-06-03 16:42:45] -rw-r--r--. 1 boinc boinc     20487 Jun  3 16:42 stderr.txt
[2025-06-03 16:42:45] HITS file was successfully produced:
[2025-06-03 16:42:45] -rw-------. 1 boinc boinc 174586573 Jun  3 16:33 shared/HITS.pool.root.1
[2025-06-03 16:42:45]  *** Contents of shared directory: ***
[2025-06-03 16:42:45] total 384088
[2025-06-03 16:42:45] -rw-r--r--. 2 boinc boinc 216678425 Jun  3 11:06 ATLAS.root_0
[2025-06-03 16:42:45] -rw-r--r--. 2 boinc boinc     15093 Jun  3 11:06 start_atlas.sh
[2025-06-03 16:42:45] -rw-r--r--. 2 boinc boinc    508882 Jun  3 11:06 input.tar.gz
[2025-06-03 16:42:45] -rw-------. 1 boinc boinc 174586573 Jun  3 16:33 HITS.pool.root.1
[2025-06-03 16:42:45] -rw-------. 1 boinc boinc   1505280 Jun  3 16:35 result.tar.gz
16:42:47 (2663): run_atlas exited; CPU time 47704.070594
16:42:47 (2663): called boinc_finish(0)

</stderr_txt>
]]>

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