Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:58:08 (14993): wrapper (7.7.26015): starting
07:58:08 (14993): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 07:58:08] Arguments: --nthreads 8
[2025-06-03 07:58:08] Threads: 8
[2025-06-03 07:58:08] Checking for CVMFS
[2025-06-03 07:58:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 07:58:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 07:58:09] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 07:58:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 07:58:09] 2.11.2.0 18352 31559 92708 146729 2 155 21461092 25165824 4097 130560 0 16673083 99.789 18801957 4391 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 07:58:09] CVMFS is ok
[2025-06-03 07:58:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 07:58:09] Checking for apptainer binary...
[2025-06-03 07:58:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 07:58:09] Running /usr/bin/apptainer --version
[2025-06-03 07:58:09] apptainer version 1.3.2-1.el7
[2025-06-03 07:58:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 07:58:10] cg-vwn313.simple-grid.lan
[2025-06-03 07:58:10] apptainer works
[2025-06-03 07:58:10] Set ATHENA_PROC_NUMBER=8
[2025-06-03 07:58:10] Set ATHENA_CORE_NUMBER=8
[2025-06-03 07:58:10] Starting ATLAS job with PandaID=6677402265
[2025-06-03 07:58:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 13:25:01]  *** The last 200 lines of the pilot log: ***
[2025-06-03 13:25:01] 2025-06-03 09:39:02,392 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6677402265/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 13:25:01] 2025-06-03 09:39:02,393 | INFO     | extracted standard info from prmon json
[2025-06-03 13:25:01] 2025-06-03 09:39:02,393 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 13:25:01] 2025-06-03 09:39:02,393 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 13:25:01] 2025-06-03 09:39:02,394 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 13:25:01] 2025-06-03 09:39:02,394 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 13:25:01] 2025-06-03 09:39:02,398 | INFO     | fitting pss+swap vs Time
[2025-06-03 13:25:01] 2025-06-03 09:39:02,399 | INFO     | sum of square deviations: 3081657780.0
[2025-06-03 13:25:01] 2025-06-03 09:39:02,401 | INFO     | sum of deviations: -1696453493.0000038
[2025-06-03 13:25:01] 2025-06-03 09:39:02,401 | INFO     | mean x: 1748936903.0
[2025-06-03 13:25:01] 2025-06-03 09:39:02,401 | INFO     | mean y: 2477916.9348837207
[2025-06-03 13:25:01] 2025-06-03 09:39:02,401 | INFO     | -- intersect: 965268184.3639164
[2025-06-03 13:25:01] 2025-06-03 09:39:02,402 | INFO     | intersect: 965268184.3639164
[2025-06-03 13:25:01] 2025-06-03 09:39:02,402 | INFO     | chi2: 2.533648541646066
[2025-06-03 13:25:01] 2025-06-03 09:39:02,410 | INFO     | sum of square deviations: 2871616632.5
[2025-06-03 13:25:01] 2025-06-03 09:39:02,412 | INFO     | sum of deviations: 12296431270.499996
[2025-06-03 13:25:01] 2025-06-03 09:39:02,412 | INFO     | mean x: 1748936750.5
[2025-06-03 13:25:01] 2025-06-03 09:39:02,412 | INFO     | mean y: 2487883.3095238097
[2025-06-03 13:25:01] 2025-06-03 09:39:02,412 | INFO     | -- intersect: -7486562119.250263
[2025-06-03 13:25:01] 2025-06-03 09:39:02,412 | INFO     | intersect: -7486562119.250263
[2025-06-03 13:25:01] 2025-06-03 09:39:02,413 | INFO     | chi2: 1.7689976461381371
[2025-06-03 13:25:01] 2025-06-03 09:39:02,413 | INFO     | current chi2=1.7689976461381371 (change=30.179832874971247 %)
[2025-06-03 13:25:01] 2025-06-03 09:39:02,413 | INFO     | sum of square deviations: 2671343110.0
[2025-06-03 13:25:01] 2025-06-03 09:39:02,415 | INFO     | sum of deviations: 11969784474.999996
[2025-06-03 13:25:01] 2025-06-03 09:39:02,415 | INFO     | mean x: 1748936598.0
[2025-06-03 13:25:01] 2025-06-03 09:39:02,415 | INFO     | mean y: 2487634.536585366
[2025-06-03 13:25:01] 2025-06-03 09:39:02,415 | INFO     | -- intersect: -7834167290.146492
[2025-06-03 13:25:01] 2025-06-03 09:39:02,415 | INFO     | intersect: -7834167290.146492
[2025-06-03 13:25:01] 2025-06-03 09:39:02,416 | INFO     | chi2: 1.7698917147916937
[2025-06-03 13:25:01] 2025-06-03 09:39:02,416 | INFO     | current chi2=1.7698917147916937 (change=-0.05054097474399646 %)
[2025-06-03 13:25:01] 2025-06-03 09:39:02,416 | INFO     | right removable region: 204
[2025-06-03 13:25:01] 2025-06-03 09:39:02,416 | INFO     | sum of square deviations: 2871616632.5
[2025-06-03 13:25:01] 2025-06-03 09:39:02,418 | INFO     | sum of deviations: -37701602050.0
[2025-06-03 13:25:01] 2025-06-03 09:39:02,426 | INFO     | mean x: 1748937055.5
[2025-06-03 13:25:01] 2025-06-03 09:39:02,426 | INFO     | mean y: 2503815.961904762
[2025-06-03 13:25:01] 2025-06-03 09:39:02,426 | INFO     | -- intersect: 22964388118.587307
[2025-06-03 13:25:01] 2025-06-03 09:39:02,426 | INFO     | intersect: 22964388118.587307
[2025-06-03 13:25:01] 2025-06-03 09:39:02,427 | INFO     | chi2: 0.9393786354166277
[2025-06-03 13:25:01] 2025-06-03 09:39:02,427 | INFO     | current chi2=0.9393786354166277 (change=62.92387756328941 %)
[2025-06-03 13:25:01] 2025-06-03 09:39:02,427 | INFO     | sum of square deviations: 2671343110.0
[2025-06-03 13:25:01] 2025-06-03 09:39:02,429 | INFO     | sum of deviations: -33002376892.0
[2025-06-03 13:25:01] 2025-06-03 09:39:02,429 | INFO     | mean x: 1748937208.0
[2025-06-03 13:25:01] 2025-06-03 09:39:02,429 | INFO     | mean y: 2500206.712195122
[2025-06-03 13:25:01] 2025-06-03 09:39:02,429 | INFO     | -- intersect: 21609265987.861965
[2025-06-03 13:25:01] 2025-06-03 09:39:02,429 | INFO     | intersect: 21609265987.861965
[2025-06-03 13:25:01] 2025-06-03 09:39:02,430 | INFO     | chi2: 0.9234553865923538
[2025-06-03 13:25:01] 2025-06-03 09:39:02,430 | INFO     | current chi2=0.9234553865923538 (change=1.695083135163244 %)
[2025-06-03 13:25:01] 2025-06-03 09:39:02,430 | INFO     | left removable region: 20
[2025-06-03 13:25:01] 2025-06-03 09:39:02,430 | INFO     | sum of square deviations: 1931608310.0
[2025-06-03 13:25:01] 2025-06-03 09:39:02,432 | INFO     | sum of deviations: -4076101709.5000005
[2025-06-03 13:25:01] 2025-06-03 09:39:02,432 | INFO     | mean x: 1748937177.5
[2025-06-03 13:25:01] 2025-06-03 09:39:02,432 | INFO     | mean y: 2498401.5815217393
[2025-06-03 13:25:01] 2025-06-03 09:39:02,432 | INFO     | -- intersect: 3693125420.584073
[2025-06-03 13:25:01] 2025-06-03 09:39:02,432 | INFO     | intersect: 3693125420.584073
[2025-06-03 13:25:01] 2025-06-03 09:39:02,433 | INFO     | chi2: 0.059996182510799474
[2025-06-03 13:25:01] 2025-06-03 09:39:02,433 | INFO     | -- intersect: 3693125420.584073
[2025-06-03 13:25:01] 2025-06-03 09:39:02,433 | INFO     | current memory leak: -2.11 B/s (using 184 data points, chi2=0.06)
[2025-06-03 13:25:01] 2025-06-03 09:39:02,434 | INFO     | ..............................
[2025-06-03 13:25:01] 2025-06-03 09:39:02,434 | INFO     | . Timing measurements:
[2025-06-03 13:25:01] 2025-06-03 09:39:02,434 | INFO     | . get job = 0 s
[2025-06-03 13:25:01] 2025-06-03 09:39:02,434 | INFO     | . initial setup = 3 s
[2025-06-03 13:25:01] 2025-06-03 09:39:02,434 | INFO     | . payload setup = 14 s
[2025-06-03 13:25:01] 2025-06-03 09:39:02,434 | INFO     | . stage-in = 0 s
[2025-06-03 13:25:01] 2025-06-03 09:39:02,434 | INFO     | . payload execution = 13095 s
[2025-06-03 13:25:01] 2025-06-03 09:39:02,435 | INFO     | . stage-out = 3 s
[2025-06-03 13:25:01] 2025-06-03 09:39:02,435 | INFO     | . log creation = 1 s
[2025-06-03 13:25:01] 2025-06-03 09:39:02,435 | INFO     | ..............................
[2025-06-03 13:25:01] 2025-06-03 09:39:02,615 | INFO     | 
[2025-06-03 13:25:01] 2025-06-03 09:39:02,615 | INFO     | job summary report
[2025-06-03 13:25:01] 2025-06-03 09:39:02,615 | INFO     | --------------------------------------------------
[2025-06-03 13:25:01] 2025-06-03 09:39:02,615 | INFO     | PanDA job id: 6677402265
[2025-06-03 13:25:01] 2025-06-03 09:39:02,615 | INFO     | task id: 45006595
[2025-06-03 13:25:01] 2025-06-03 09:39:02,615 | INFO     | errors: (none)
[2025-06-03 13:25:01] 2025-06-03 09:39:02,615 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 13:25:01] 2025-06-03 09:39:02,615 | INFO     | pilot state: finished 
[2025-06-03 13:25:01] 2025-06-03 09:39:02,616 | INFO     | transexitcode: 0
[2025-06-03 13:25:01] 2025-06-03 09:39:02,616 | INFO     | exeerrorcode: 0
[2025-06-03 13:25:01] 2025-06-03 09:39:02,616 | INFO     | exeerrordiag: 
[2025-06-03 13:25:01] 2025-06-03 09:39:02,616 | INFO     | exitcode: 0
[2025-06-03 13:25:01] 2025-06-03 09:39:02,616 | INFO     | exitmsg: OK
[2025-06-03 13:25:01] 2025-06-03 09:39:02,616 | INFO     | cpuconsumptiontime: 50161 s
[2025-06-03 13:25:01] 2025-06-03 09:39:02,616 | INFO     | nevents: 400
[2025-06-03 13:25:01] 2025-06-03 09:39:02,616 | INFO     | neventsw: 0
[2025-06-03 13:25:01] 2025-06-03 09:39:02,616 | INFO     | pid: 30125
[2025-06-03 13:25:01] 2025-06-03 09:39:02,616 | INFO     | pgrp: 30125
[2025-06-03 13:25:01] 2025-06-03 09:39:02,616 | INFO     | corecount: 8
[2025-06-03 13:25:01] 2025-06-03 09:39:02,617 | INFO     | event service: False
[2025-06-03 13:25:01] 2025-06-03 09:39:02,617 | INFO     | sizes: {0: 2404956, 1: 2405211, 10: 2405417, 12: 2405445, 13113: 2434997, 13114: 2434996, 13118: 2444123, 13120: 2444179, 13208: 2444349}
[2025-06-03 13:25:01] 2025-06-03 09:39:02,617 | INFO     | --------------------------------------------------
[2025-06-03 13:25:01] 2025-06-03 09:39:02,617 | INFO     | 
[2025-06-03 13:25:01] 2025-06-03 09:39:02,617 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-06-03 13:25:01] 2025-06-03 09:39:02,730 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 13:25:01] 2025-06-03 09:39:02,731 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 13:25:01] 2025-06-03 09:39:02,731 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 13:25:01] 2025-06-03 09:39:02,731 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 13:25:01] 2025-06-03 09:39:02,731 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 13:25:01] 2025-06-03 09:39:02,731 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 13:25:01] 2025-06-03 09:39:02,731 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 13:25:01] 2025-06-03 09:39:02,731 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 13:25:01] 2025-06-03 09:39:02,731 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 13:25:01] 2025-06-03 09:39:02,731 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 13:25:01] 2025-06-03 09:39:02,732 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 13:25:01] 2025-06-03 09:39:02,732 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 13:25:01] 2025-06-03 09:39:02,732 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 13:25:01] 2025-06-03 09:39:02,732 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 13:25:01] 2025-06-03 09:39:02,732 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 13:25:01] 2025-06-03 09:39:02,732 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 13:25:01] 2025-06-03 09:39:02,732 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 13:25:01] 2025-06-03 09:39:02,733 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 13:25:01] 2025-06-03 09:39:02,733 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 13:25:01] 2025-06-03 09:39:02,733 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 13:25:01] 2025-06-03 09:39:02,733 | INFO     | job 6677402265 has completed (purged errors)
[2025-06-03 13:25:01] 2025-06-03 09:39:02,733 | INFO     | overall cleanup function is called
[2025-06-03 13:25:01] 2025-06-03 09:39:03,742 | INFO     | --- collectZombieJob: --- 10, [30125]
[2025-06-03 13:25:01] 2025-06-03 09:39:03,743 | INFO     | zombie collector waiting for pid 30125
[2025-06-03 13:25:01] 2025-06-03 09:39:03,743 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 13:25:01] 2025-06-03 09:39:03,743 | INFO     | collected zombie processes
[2025-06-03 13:25:01] 2025-06-03 09:39:03,743 | INFO     | will attempt to kill all subprocesses of pid=30125
[2025-06-03 13:25:01] 2025-06-03 09:39:03,863 | INFO     | process IDs to be killed: [30125] (in reverse order)
[2025-06-03 13:25:01] 2025-06-03 09:39:04,042 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 13:25:01] 2025-06-03 09:39:04,042 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 13:25:01] 2025-06-03 09:39:04,046 | INFO     | did not find any defunct processes belonging to 30125
[2025-06-03 13:25:01] 2025-06-03 09:39:04,049 | INFO     | did not find any defunct processes belonging to 30125
[2025-06-03 13:25:01] 2025-06-03 09:39:04,050 | INFO     | ready for new job
[2025-06-03 13:25:01] 2025-06-03 09:39:04,050 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 13:25:01] 2025-06-03 09:39:04,052 | INFO     | **************************************
[2025-06-03 13:25:01] 2025-06-03 09:39:04,052 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 13:25:01] 2025-06-03 09:39:04,056 | INFO     | **************************************
[2025-06-03 13:25:01] 2025-06-03 09:39:04,056 | INFO     | 
[2025-06-03 13:25:01] 2025-06-03 09:39:04,056 | INFO     | pilot is running in a VM
[2025-06-03 13:25:01] 2025-06-03 09:39:04,057 | INFO     | architecture information:
[2025-06-03 13:25:01] 2025-06-03 09:39:04,059 | INFO     | executing command: cat /etc/os-release
[2025-06-03 13:25:01] 2025-06-03 09:39:04,131 | INFO     | cat /etc/os-release:
[2025-06-03 13:25:01] NAME="CentOS Linux"
[2025-06-03 13:25:01] VERSION="7 (Core)"
[2025-06-03 13:25:01] ID="centos"
[2025-06-03 13:25:01] ID_LIKE="rhel fedora"
[2025-06-03 13:25:01] VERSION_ID="7"
[2025-06-03 13:25:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 13:25:01] ANSI_COLOR="0;31"
[2025-06-03 13:25:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 13:25:01] HOME_URL="https://www.centos.org/"
[2025-06-03 13:25:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 13:25:01] 
[2025-06-03 13:25:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 13:25:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 13:25:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 13:25:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 13:25:01] 
[2025-06-03 13:25:01] 2025-06-03 09:39:04,131 | INFO     | **************************************
[2025-06-03 13:25:01] 2025-06-03 09:39:04,635 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-06-03 13:25:01] 2025-06-03 09:39:04,657 | INFO     | sufficient remaining disk space (496842571776 B)
[2025-06-03 13:25:01] 2025-06-03 09:39:04,658 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 13:25:01] 2025-06-03 09:39:04,658 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 13:25:01] 2025-06-03 09:39:04,658 | INFO     | update_server=False
[2025-06-03 13:25:01] 2025-06-03 09:39:04,658 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 13:25:01] 2025-06-03 09:39:04,659 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:25:01] 2025-06-03 09:39:04,660 | INFO     | aborting loop
[2025-06-03 13:25:01] 2025-06-03 09:39:04,660 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 13:25:01] 2025-06-03 09:39:04,674 | INFO     | all payload control threads have been joined
[2025-06-03 13:25:01] 2025-06-03 09:39:05,285 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 13:25:01] 2025-06-03 09:39:05,286 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 13:25:01] 2025-06-03 09:39:05,286 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 13:25:01] 2025-06-03 09:39:05,374 | INFO     | all data control threads have been joined
[2025-06-03 13:25:01] 2025-06-03 09:39:05,658 | INFO     | all job control threads have been joined
[2025-06-03 13:25:01] 2025-06-03 09:39:05,664 | INFO     | [job] retrieve thread has finished
[2025-06-03 13:25:01] 2025-06-03 09:39:05,665 | INFO     | [job] job monitor thread has finished
[2025-06-03 13:25:01] 2025-06-03 09:39:05,680 | INFO     | [payload] control thread has finished
[2025-06-03 13:25:01] 2025-06-03 09:39:06,029 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 13:25:01] 2025-06-03 09:39:06,077 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 13:25:01] 2025-06-03 09:39:06,163 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 13:25:01] 2025-06-03 09:39:06,380 | INFO     | [data] control thread has finished
[2025-06-03 13:25:01] 2025-06-03 09:39:06,430 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 13:25:01] 2025-06-03 09:39:06,471 | INFO     | [payload] validate_post thread has finished
[2025-06-03 13:25:01] 2025-06-03 09:39:06,621 | INFO     | [data] copytool_in thread has finished
[2025-06-03 13:25:01] 2025-06-03 09:39:06,664 | INFO     | [job] control thread has finished
[2025-06-03 13:25:01] 2025-06-03 09:39:06,667 | INFO     | [data] copytool_out thread has finished
[2025-06-03 13:25:01] 2025-06-03 09:39:06,795 | INFO     | [job] validate thread has finished
[2025-06-03 13:25:01] 2025-06-03 09:39:07,087 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 13:25:01] 2025-06-03 09:39:07,099 | INFO     | [payload] failed_post thread has finished
[2025-06-03 13:25:01] 2025-06-03 09:39:07,629 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:25:01] 2025-06-03 09:39:08,635 | INFO     | [job] queue monitor thread has finished
[2025-06-03 13:25:01] 2025-06-03 09:39:10,441 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 13:25:01] 2025-06-03 09:39:11,997 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139754586060608)>', '<ExcThread(monitor, started 139753965987584)>']
[2025-06-03 13:25:01] 2025-06-03 09:39:12,327 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 13:25:01] 2025-06-03 09:39:12,328 | INFO     | [monitor] control thread has ended
[2025-06-03 13:25:01] 2025-06-03 09:39:17,023 | INFO     | all workflow threads have been joined
[2025-06-03 13:25:01] 2025-06-03 09:39:17,024 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 13:25:01] 2025-06-03 09:39:17,024 | INFO     | traces error code: 0
[2025-06-03 13:25:01] 2025-06-03 09:39:17,024 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 13:25:01] 2025-06-03 09:39:17,351 [wrapper] ==== pilot stdout END ====
[2025-06-03 13:25:01] 2025-06-03 09:39:17,444 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 13:25:01] 2025-06-03 09:39:17,534 [wrapper] pilotpid: 19099
[2025-06-03 13:25:01] 2025-06-03 09:39:17,577 [wrapper] Pilot exit status: 0
[2025-06-03 13:25:01] 2025-06-03 09:39:17,973 [wrapper] pandaids: 6677402265
[2025-06-03 13:25:01] 2025-06-03 09:39:18,882 [wrapper] cleanup supervisor_pilot 13874 19100
[2025-06-03 13:25:01] 2025-06-03 09:39:19,001 [wrapper] Test setup, not cleaning
[2025-06-03 13:25:01] 2025-06-03 09:39:19,098 [wrapper] apfmon messages muted
[2025-06-03 13:25:01] 2025-06-03 09:39:19,202 [wrapper] ==== wrapper stdout END ====
[2025-06-03 13:25:01] 2025-06-03 09:39:19,253 [wrapper] ==== wrapper stderr END ====
[2025-06-03 13:25:01]  *** Error codes and diagnostics ***
[2025-06-03 13:25:01]     "exeErrorCode": 0,
[2025-06-03 13:25:01]     "exeErrorDiag": "",
[2025-06-03 13:25:01]     "pilotErrorCode": 0,
[2025-06-03 13:25:01]     "pilotErrorDiag": "",
[2025-06-03 13:25:01]  *** Listing of results directory ***
[2025-06-03 13:25:01] total 395836
[2025-06-03 13:25:01] -rw-r--r--. 1 boinc boinc    495897 Jun  2 23:29 pilot3.tar.gz
[2025-06-03 13:25:01] -rwx------. 1 boinc boinc     37140 Jun  2 23:45 runpilot2-wrapper.sh
[2025-06-03 13:25:01] -rw-r--r--. 1 boinc boinc      5111 Jun  2 23:45 queuedata.json
[2025-06-03 13:25:01] -rw-r--r--. 1 boinc boinc       100 Jun  3 07:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 13:25:01] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 07:58 run_atlas
[2025-06-03 13:25:01] -rw-r--r--. 1 boinc boinc       105 Jun  3 07:58 job.xml
[2025-06-03 13:25:01] -rw-r--r--. 2 boinc boinc 218622478 Jun  3 07:58 EVNT.45006593._000507.pool.root.1
[2025-06-03 13:25:01] -rw-r--r--. 2 boinc boinc     15093 Jun  3 07:58 start_atlas.sh
[2025-06-03 13:25:01] drwxrwx--x. 2 boinc boinc        68 Jun  3 07:58 shared
[2025-06-03 13:25:01] -rw-r--r--. 2 boinc boinc    508881 Jun  3 07:58 input.tar.gz
[2025-06-03 13:25:01] -rw-r--r--. 1 boinc boinc      6392 Jun  3 07:58 init_data.xml
[2025-06-03 13:25:01] -rw-r--r--. 1 boinc boinc         0 Jun  3 07:58 boinc_lockfile
[2025-06-03 13:25:01] -rw-r--r--. 1 boinc boinc      2524 Jun  3 07:58 pandaJob.out
[2025-06-03 13:25:01] -rw-------. 1 boinc boinc    988073 Jun  3 07:58 agis_schedconf.cvmfs.json
[2025-06-03 13:25:01] drwx------. 4 boinc boinc      4096 Jun  3 07:58 pilot3
[2025-06-03 13:25:01] -rw-------. 1 boinc boinc 179820425 Jun  3 11:36 HITS.45006595._012670.pool.root.1
[2025-06-03 13:25:01] -rw-r--r--. 1 boinc boinc       531 Jun  3 11:36 boinc_task_state.xml
[2025-06-03 13:25:01] -rw-------. 1 boinc boinc      1030 Jun  3 11:37 memory_monitor_summary.json
[2025-06-03 13:25:01] -rw-------. 1 boinc boinc   1603667 Jun  3 11:37 agis_ddmendpoints.agis.ALL.json
[2025-06-03 13:25:01] -rw-------. 1 boinc boinc    384126 Jun  3 11:37 log.45006595._012670.job.log.tgz.1
[2025-06-03 13:25:01] -rw-------. 1 boinc boinc        95 Jun  3 11:38 pilot_heartbeat.json
[2025-06-03 13:25:01] -rw-------. 1 boinc boinc      7698 Jun  3 11:39 heartbeat.json
[2025-06-03 13:25:01] -rw-------. 1 boinc boinc      4417 Jun  3 11:39 pilotlog.txt
[2025-06-03 13:25:01] -rw-------. 1 boinc boinc   1149655 Jun  3 11:39 log.45006595._012670.job.log.1
[2025-06-03 13:25:01] -rw-------. 1 boinc boinc       357 Jun  3 11:39 output.list
[2025-06-03 13:25:01] -rw-r--r--. 1 boinc boinc       620 Jun  3 11:39 runtime_log
[2025-06-03 13:25:01] -rw-------. 1 boinc boinc   1556480 Jun  3 11:39 result.tar.gz
[2025-06-03 13:25:01] -rw-r--r--. 1 boinc boinc      8673 Jun  3 11:39 runtime_log.err
[2025-06-03 13:25:01] -rw-------. 1 boinc boinc       656 Jun  3 11:39 1nKODmH9Rg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm4qgKDmJj5rJn.diag
[2025-06-03 13:25:01] -rw-r--r--. 1 boinc boinc      8192 Jun  3 13:25 boinc_mmap_file
[2025-06-03 13:25:01] -rw-r--r--. 1 boinc boinc        28 Jun  3 13:25 wrapper_checkpoint.txt
[2025-06-03 13:25:01] -rw-r--r--. 1 boinc boinc     20514 Jun  3 13:25 stderr.txt
[2025-06-03 13:25:01] HITS file was successfully produced:
[2025-06-03 13:25:01] -rw-------. 1 boinc boinc 179820425 Jun  3 11:36 shared/HITS.pool.root.1
[2025-06-03 13:25:01]  *** Contents of shared directory: ***
[2025-06-03 13:25:01] total 391144
[2025-06-03 13:25:01] -rw-r--r--. 2 boinc boinc 218622478 Jun  3 07:58 ATLAS.root_0
[2025-06-03 13:25:01] -rw-r--r--. 2 boinc boinc     15093 Jun  3 07:58 start_atlas.sh
[2025-06-03 13:25:01] -rw-r--r--. 2 boinc boinc    508881 Jun  3 07:58 input.tar.gz
[2025-06-03 13:25:01] -rw-------. 1 boinc boinc 179820425 Jun  3 11:36 HITS.pool.root.1
[2025-06-03 13:25:01] -rw-------. 1 boinc boinc   1556480 Jun  3 11:39 result.tar.gz
13:25:03 (14993): run_atlas exited; CPU time 50323.246607
13:25:03 (14993): called boinc_finish(0)

</stderr_txt>
]]>

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