Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:33:13 (3197079): wrapper (7.7.26015): starting
19:33:13 (3197079): wrapper: running run_atlas (--nthreads 8)
[2025-06-02 19:33:13] Arguments: --nthreads 8
[2025-06-02 19:33:13] Threads: 8
[2025-06-02 19:33:13] Checking for CVMFS
[2025-06-02 19:33:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-02 19:33:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-02 19:33:13] Running cvmfs_config stat atlas.cern.ch
[2025-06-02 19:33:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-02 19:33:14] 2.12.6.0 4867 35098 253040 146723 2 420 28629450 40960001 10076 16776704 0 350618971 99.784 210097146 22351 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-02 19:33:14] CVMFS is ok
[2025-06-02 19:33:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-02 19:33:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-02 19:33:14] Further information can be found at the LHC@home message board.
[2025-06-02 19:33:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 19:33:14] Checking for apptainer binary...
[2025-06-02 19:33:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-02 19:33:14] Running /usr/bin/apptainer --version
[2025-06-02 19:33:14] apptainer version 1.4.1-1.el9
[2025-06-02 19:33:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 19:33:14] c7-3-35.aglt2.org
[2025-06-02 19:33:14] apptainer works
[2025-06-02 19:33:14] Set ATHENA_PROC_NUMBER=8
[2025-06-02 19:33:14] Set ATHENA_CORE_NUMBER=8
[2025-06-02 19:33:14] Starting ATLAS job with PandaID=6677390091
[2025-06-02 19:33:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-02 20:30:11]  *** The last 200 lines of the pilot log: ***
[2025-06-02 20:30:12]  is_altstaged=None
[2025-06-02 20:30:12]  is_tar=False
[2025-06-02 20:30:12]  lfn=log.45006595._006398.job.log.tgz.1
[2025-06-02 20:30:12]  mtime=0
[2025-06-02 20:30:12]  protocol_id=None
[2025-06-02 20:30:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-02 20:30:12]  replicas=None
[2025-06-02 20:30:12]  scope=mc23_13p6TeV
[2025-06-02 20:30:12]  status=None
[2025-06-02 20:30:12]  status_code=0
[2025-06-02 20:30:12]  storage_token=
[2025-06-02 20:30:12]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6677390091/log.45006595._006398.job.log.tgz.1
[2025-06-02 20:30:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e9/ec/log.45006595._006398.job.log.tgz.1
[2025-06-02 20:30:12]  workdir=None
[2025-06-02 20:30:12] ]
[2025-06-02 20:30:12] 2025-06-03 00:29:43,246 | INFO     | transferring file log.45006595._006398.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6677390091/log.45006595._006398.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-02 20:30:12] 2025-06-03 00:29:43,246 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6677390091/log.45006595._006398.job.log.tgz.1 /tmp/boinchome/slots/2/log.45006595._006398.job
[2025-06-02 20:30:12] 2025-06-03 00:29:43,268 | INFO     | adding to output.list: log.45006595._006398.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e9/ec/log.45006595._006398.job.log.tg
[2025-06-02 20:30:12] 2025-06-03 00:29:43,269 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-02 20:30:12] 2025-06-03 00:29:43,269 | INFO     | summary of transferred files:
[2025-06-02 20:30:12] 2025-06-03 00:29:43,270 | INFO     |  -- lfn=log.45006595._006398.job.log.tgz.1, status_code=0, status=transferred
[2025-06-02 20:30:12] 2025-06-03 00:29:43,270 | INFO     | stage-out finished correctly
[2025-06-02 20:30:12] 2025-06-03 00:29:43,386 | INFO     | number of running child processes to parent process 3207588: 1
[2025-06-02 20:30:12] 2025-06-03 00:29:43,387 | INFO     | maximum number of monitored processes: 6
[2025-06-02 20:30:12] 2025-06-03 00:29:45,890 | INFO     | monitor loop #247: job 0:6677390091 is in state 'finished'
[2025-06-02 20:30:12] 2025-06-03 00:29:45,890 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-02 20:30:12] 2025-06-03 00:29:46,097 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-02 20:30:12] 2025-06-03 00:29:46,178 | INFO     | job 6677390091 has state=finished
[2025-06-02 20:30:12] 2025-06-03 00:29:46,179 | INFO     | preparing for final server update for job 6677390091 in state='finished'
[2025-06-02 20:30:12] 2025-06-03 00:29:46,179 | INFO     | this job has now completed (state=finished)
[2025-06-02 20:30:12] 2025-06-03 00:29:46,179 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-02 20:30:12] 2025-06-03 00:29:46,179 | INFO     | log transfer has been attempted: DONE
[2025-06-02 20:30:12] 2025-06-03 00:29:46,180 | INFO     | job 6677390091 has finished - writing final server update
[2025-06-02 20:30:12] 2025-06-03 00:29:46,180 | INFO     | total number of processed events: 400 (read)
[2025-06-02 20:30:12] 2025-06-03 00:29:46,199 | INFO     | executing command: lscpu
[2025-06-02 20:30:12] 2025-06-03 00:29:46,263 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-02 20:30:12] 2025-06-03 00:29:48,392 | INFO     | monitor loop #248: job 0:6677390091 is in state 'finished'
[2025-06-02 20:30:12] 2025-06-03 00:29:48,392 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-02 20:30:12] 2025-06-03 00:29:50,400 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-02 20:30:12] 2025-06-03 00:29:50,400 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6677390091/memory_monitor_summary.json (trf name=prmon)
[2025-06-02 20:30:12] 2025-06-03 00:29:50,401 | INFO     | extracted standard info from prmon json
[2025-06-02 20:30:12] 2025-06-03 00:29:50,401 | INFO     | extracted standard memory fields from prmon json
[2025-06-02 20:30:12] 2025-06-03 00:29:50,401 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-02 20:30:12] 2025-06-03 00:29:50,401 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-02 20:30:12] 2025-06-03 00:29:50,402 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-02 20:30:12] 2025-06-03 00:29:50,403 | INFO     | fitting pss+swap vs Time
[2025-06-02 20:30:12] 2025-06-03 00:29:50,403 | INFO     | sum of square deviations: 34277852.0
[2025-06-02 20:30:12] 2025-06-03 00:29:50,403 | INFO     | sum of deviations: -751330808.5
[2025-06-02 20:30:12] 2025-06-03 00:29:50,403 | INFO     | mean x: 1748908970.5
[2025-06-02 20:30:12] 2025-06-03 00:29:50,404 | INFO     | mean y: 2212724.8125
[2025-06-02 20:30:12] 2025-06-03 00:29:50,404 | INFO     | -- intersect: 38336271428.33534
[2025-06-02 20:30:12] 2025-06-03 00:29:50,404 | INFO     | intersect: 38336271428.33534
[2025-06-02 20:30:12] 2025-06-03 00:29:50,404 | INFO     | chi2: 0.007718969146647144
[2025-06-02 20:30:12] 2025-06-03 00:29:50,404 | INFO     | -- intersect: 38336271428.33534
[2025-06-02 20:30:12] 2025-06-03 00:29:50,404 | INFO     | current memory leak: -21.92 B/s (using 48 data points, chi2=0.01)
[2025-06-02 20:30:12] 2025-06-03 00:29:50,404 | INFO     | ..............................
[2025-06-02 20:30:12] 2025-06-03 00:29:50,404 | INFO     | . Timing measurements:
[2025-06-02 20:30:12] 2025-06-03 00:29:50,405 | INFO     | . get job = 0 s
[2025-06-02 20:30:12] 2025-06-03 00:29:50,405 | INFO     | . initial setup = 2 s
[2025-06-02 20:30:12] 2025-06-03 00:29:50,405 | INFO     | . payload setup = 6 s
[2025-06-02 20:30:12] 2025-06-03 00:29:50,405 | INFO     | . stage-in = 0 s
[2025-06-02 20:30:12] 2025-06-03 00:29:50,405 | INFO     | . payload execution = 3351 s
[2025-06-02 20:30:12] 2025-06-03 00:29:50,405 | INFO     | . stage-out = 0 s
[2025-06-02 20:30:12] 2025-06-03 00:29:50,405 | INFO     | . log creation = 0 s
[2025-06-02 20:30:12] 2025-06-03 00:29:50,405 | INFO     | ..............................
[2025-06-02 20:30:12] 2025-06-03 00:29:50,758 | INFO     | 
[2025-06-02 20:30:12] 2025-06-03 00:29:50,758 | INFO     | job summary report
[2025-06-02 20:30:12] 2025-06-03 00:29:50,758 | INFO     | --------------------------------------------------
[2025-06-02 20:30:12] 2025-06-03 00:29:50,758 | INFO     | PanDA job id: 6677390091
[2025-06-02 20:30:12] 2025-06-03 00:29:50,758 | INFO     | task id: 45006595
[2025-06-02 20:30:12] 2025-06-03 00:29:50,758 | INFO     | errors: (none)
[2025-06-02 20:30:12] 2025-06-03 00:29:50,758 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-02 20:30:12] 2025-06-03 00:29:50,759 | INFO     | pilot state: finished 
[2025-06-02 20:30:12] 2025-06-03 00:29:50,759 | INFO     | transexitcode: 0
[2025-06-02 20:30:12] 2025-06-03 00:29:50,759 | INFO     | exeerrorcode: 0
[2025-06-02 20:30:12] 2025-06-03 00:29:50,759 | INFO     | exeerrordiag: 
[2025-06-02 20:30:12] 2025-06-03 00:29:50,759 | INFO     | exitcode: 0
[2025-06-02 20:30:12] 2025-06-03 00:29:50,759 | INFO     | exitmsg: OK
[2025-06-02 20:30:12] 2025-06-03 00:29:50,759 | INFO     | cpuconsumptiontime: 24465 s
[2025-06-02 20:30:12] 2025-06-03 00:29:50,759 | INFO     | nevents: 400
[2025-06-02 20:30:12] 2025-06-03 00:29:50,759 | INFO     | neventsw: 0
[2025-06-02 20:30:12] 2025-06-03 00:29:50,759 | INFO     | pid: 3207588
[2025-06-02 20:30:12] 2025-06-03 00:29:50,759 | INFO     | pgrp: 3207588
[2025-06-02 20:30:12] 2025-06-03 00:29:50,759 | INFO     | corecount: 8
[2025-06-02 20:30:12] 2025-06-03 00:29:50,759 | INFO     | event service: False
[2025-06-02 20:30:12] 2025-06-03 00:29:50,759 | INFO     | sizes: {0: 2405177, 5: 2405383, 11: 2405439, 3362: 2430986, 3363: 2439927, 3366: 2439983, 3370: 2440281}
[2025-06-02 20:30:12] 2025-06-03 00:29:50,759 | INFO     | --------------------------------------------------
[2025-06-02 20:30:12] 2025-06-03 00:29:50,759 | INFO     | 
[2025-06-02 20:30:12] 2025-06-03 00:29:50,760 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-06-02 20:30:12] 2025-06-03 00:29:50,783 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-02 20:30:12] 2025-06-03 00:29:50,783 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-02 20:30:12] 2025-06-03 00:29:50,783 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-02 20:30:12] 2025-06-03 00:29:50,783 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-02 20:30:12] 2025-06-03 00:29:50,783 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-02 20:30:12] 2025-06-03 00:29:50,784 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-02 20:30:12] 2025-06-03 00:29:50,784 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-02 20:30:12] 2025-06-03 00:29:50,784 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-02 20:30:12] 2025-06-03 00:29:50,784 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-02 20:30:12] 2025-06-03 00:29:50,784 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-02 20:30:12] 2025-06-03 00:29:50,784 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-02 20:30:12] 2025-06-03 00:29:50,784 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-02 20:30:12] 2025-06-03 00:29:50,784 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-02 20:30:12] 2025-06-03 00:29:50,784 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-02 20:30:12] 2025-06-03 00:29:50,784 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-02 20:30:12] 2025-06-03 00:29:50,784 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-02 20:30:12] 2025-06-03 00:29:50,784 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-02 20:30:12] 2025-06-03 00:29:50,785 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-02 20:30:12] 2025-06-03 00:29:50,785 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-02 20:30:12] 2025-06-03 00:29:50,785 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-02 20:30:12] 2025-06-03 00:29:50,785 | INFO     | job 6677390091 has completed (purged errors)
[2025-06-02 20:30:12] 2025-06-03 00:29:50,785 | INFO     | overall cleanup function is called
[2025-06-02 20:30:12] 2025-06-03 00:29:51,793 | INFO     | --- collectZombieJob: --- 10, [3207588]
[2025-06-02 20:30:12] 2025-06-03 00:29:51,793 | INFO     | zombie collector waiting for pid 3207588
[2025-06-02 20:30:12] 2025-06-03 00:29:51,793 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-02 20:30:12] 2025-06-03 00:29:51,793 | INFO     | collected zombie processes
[2025-06-02 20:30:12] 2025-06-03 00:29:51,794 | INFO     | will attempt to kill all subprocesses of pid=3207588
[2025-06-02 20:30:12] 2025-06-03 00:29:52,216 | INFO     | process IDs to be killed: [3207588] (in reverse order)
[2025-06-02 20:30:12] 2025-06-03 00:29:52,347 | WARNING  | found no corresponding commands to process id(s)
[2025-06-02 20:30:12] 2025-06-03 00:29:52,348 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-02 20:30:12] 2025-06-03 00:29:52,364 | INFO     | did not find any defunct processes belonging to 3207588
[2025-06-02 20:30:12] 2025-06-03 00:29:52,376 | INFO     | did not find any defunct processes belonging to 3207588
[2025-06-02 20:30:12] 2025-06-03 00:29:52,376 | INFO     | ready for new job
[2025-06-02 20:30:12] 2025-06-03 00:29:52,376 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-02 20:30:12] 2025-06-03 00:29:52,378 | INFO     | **************************************
[2025-06-02 20:30:12] 2025-06-03 00:29:52,379 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-02 20:30:12] 2025-06-03 00:29:52,379 | INFO     | **************************************
[2025-06-02 20:30:12] 2025-06-03 00:29:52,379 | INFO     | 
[2025-06-02 20:30:12] 2025-06-03 00:29:52,396 | INFO     | architecture information:
[2025-06-02 20:30:12] 2025-06-03 00:29:52,397 | INFO     | executing command: cat /etc/os-release
[2025-06-02 20:30:12] 2025-06-03 00:29:52,418 | INFO     | cat /etc/os-release:
[2025-06-02 20:30:12] NAME="CentOS Linux"
[2025-06-02 20:30:12] VERSION="7 (Core)"
[2025-06-02 20:30:12] ID="centos"
[2025-06-02 20:30:12] ID_LIKE="rhel fedora"
[2025-06-02 20:30:12] VERSION_ID="7"
[2025-06-02 20:30:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-02 20:30:12] ANSI_COLOR="0;31"
[2025-06-02 20:30:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-02 20:30:12] HOME_URL="https://www.centos.org/"
[2025-06-02 20:30:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-02 20:30:12] 
[2025-06-02 20:30:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-02 20:30:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-02 20:30:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-02 20:30:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-02 20:30:12] 
[2025-06-02 20:30:12] 2025-06-03 00:29:52,418 | INFO     | **************************************
[2025-06-02 20:30:12] 2025-06-03 00:29:52,923 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-06-02 20:30:12] 2025-06-03 00:29:52,940 | INFO     | sufficient remaining disk space (124206972928 B)
[2025-06-02 20:30:12] 2025-06-03 00:29:52,940 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-02 20:30:12] 2025-06-03 00:29:52,940 | INFO     | current server update state: UPDATING_FINAL
[2025-06-02 20:30:12] 2025-06-03 00:29:52,941 | INFO     | update_server=False
[2025-06-02 20:30:12] 2025-06-03 00:29:52,941 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-02 20:30:12] 2025-06-03 00:29:52,941 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-02 20:30:12] 2025-06-03 00:29:52,995 | INFO     | all job control threads have been joined
[2025-06-02 20:30:12] 2025-06-03 00:29:53,403 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-02 20:30:12] 2025-06-03 00:29:53,404 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-02 20:30:12] 2025-06-03 00:29:53,404 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-02 20:30:12] 2025-06-03 00:29:53,404 | INFO     | will abort loop
[2025-06-02 20:30:12] 2025-06-03 00:29:53,863 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-02 20:30:12] 2025-06-03 00:29:53,932 | INFO     | found 0 job(s) in 20 queues
[2025-06-02 20:30:12] 2025-06-03 00:29:53,932 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-02 20:30:12] 2025-06-03 00:29:53,932 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-02 20:30:12] 2025-06-03 00:29:53,942 | INFO     | [job] retrieve thread has finished
[2025-06-02 20:30:12] 2025-06-03 00:29:53,971 | INFO     | all data control threads have been joined
[2025-06-02 20:30:12] 2025-06-03 00:29:53,980 | INFO     | [payload] failed_post thread has finished
[2025-06-02 20:30:12] 2025-06-03 00:29:54,001 | INFO     | [job] control thread has finished
[2025-06-02 20:30:12] 2025-06-03 00:29:54,397 | INFO     | all payload control threads have been joined
[2025-06-02 20:30:12] 2025-06-03 00:29:54,405 | INFO     | [job] job monitor thread has finished
[2025-06-02 20:30:12] 2025-06-03 00:29:54,639 | INFO     | [payload] validate_post thread has finished
[2025-06-02 20:30:12] 2025-06-03 00:29:54,878 | INFO     | [job] validate thread has finished
[2025-06-02 20:30:12] 2025-06-03 00:29:54,976 | INFO     | [data] control thread has finished
[2025-06-02 20:30:12] 2025-06-03 00:29:55,033 | INFO     | [job] create_data_payload thread has finished
[2025-06-02 20:30:12] 2025-06-03 00:29:55,201 | INFO     | [payload] validate_pre thread has finished
[2025-06-02 20:30:12] 2025-06-03 00:29:55,337 | INFO     | [payload] execute_payloads thread has finished
[2025-06-02 20:30:12] 2025-06-03 00:29:55,339 | INFO     | [data] copytool_in thread has finished
[2025-06-02 20:30:12] 2025-06-03 00:29:55,402 | INFO     | [payload] control thread has finished
[2025-06-02 20:30:12] 2025-06-03 00:29:55,495 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-02 20:30:12] 2025-06-03 00:29:55,868 | INFO     | [data] copytool_out thread has finished
[2025-06-02 20:30:12] 2025-06-03 00:29:56,500 | INFO     | [job] queue monitor thread has finished
[2025-06-02 20:30:12] 2025-06-03 00:29:56,952 | INFO     | [data] queue_monitor thread has finished
[2025-06-02 20:30:12] 2025-06-03 00:30:03,617 | INFO     | job.realtimelogging is not enabled
[2025-06-02 20:30:12] 2025-06-03 00:30:04,622 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-02 20:30:12] 2025-06-03 00:30:06,646 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140358988588864)>', '<ExcThread(monitor, started 140358499419904)>']
[2025-06-02 20:30:12] 2025-06-03 00:30:06,997 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-02 20:30:12] 2025-06-03 00:30:06,997 | INFO     | [monitor] control thread has ended
[2025-06-02 20:30:12] 2025-06-03 00:30:11,672 | INFO     | all workflow threads have been joined
[2025-06-02 20:30:12] 2025-06-03 00:30:11,672 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-02 20:30:12] 2025-06-03 00:30:11,673 | INFO     | traces error code: 0
[2025-06-02 20:30:12] 2025-06-03 00:30:11,673 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-02 20:30:12] 2025-06-03 00:30:11,811 [wrapper] ==== pilot stdout END ====
[2025-06-02 20:30:12] 2025-06-03 00:30:11,815 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-02 20:30:12] 2025-06-03 00:30:11,818 [wrapper] pilotpid: 3200655
[2025-06-02 20:30:12] 2025-06-03 00:30:11,820 [wrapper] Pilot exit status: 0
[2025-06-02 20:30:12] 2025-06-03 00:30:11,831 [wrapper] pandaids: 6677390091
[2025-06-02 20:30:12] 2025-06-03 00:30:11,922 [wrapper] cleanup supervisor_pilot 3453193 3200656
[2025-06-02 20:30:12] 2025-06-03 00:30:11,925 [wrapper] Test setup, not cleaning
[2025-06-02 20:30:12] 2025-06-03 00:30:11,929 [wrapper] apfmon messages muted
[2025-06-02 20:30:12] 2025-06-03 00:30:11,932 [wrapper] ==== wrapper stdout END ====
[2025-06-02 20:30:12] 2025-06-03 00:30:11,935 [wrapper] ==== wrapper stderr END ====
[2025-06-02 20:30:12]  *** Error codes and diagnostics ***
[2025-06-02 20:30:12]     "exeErrorCode": 0,
[2025-06-02 20:30:12]     "exeErrorDiag": "",
[2025-06-02 20:30:12]     "pilotErrorCode": 0,
[2025-06-02 20:30:12]     "pilotErrorDiag": "",
[2025-06-02 20:30:12]  *** Listing of results directory ***
[2025-06-02 20:30:12] total 389928
[2025-06-02 20:30:12] -rw-r--r--. 1 boincer umatlas    495897 Jun  2 13:47 pilot3.tar.gz
[2025-06-02 20:30:12] -rw-r--r--. 1 boincer umatlas      5111 Jun  2 13:52 queuedata.json
[2025-06-02 20:30:12] -rwx------. 1 boincer umatlas     37140 Jun  2 13:52 runpilot2-wrapper.sh
[2025-06-02 20:30:12] -rw-r--r--. 1 boincer umatlas       100 Jun  2 19:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-02 20:30:12] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  2 19:33 run_atlas
[2025-06-02 20:30:12] -rw-r--r--. 1 boincer umatlas       105 Jun  2 19:33 job.xml
[2025-06-02 20:30:12] -rw-r--r--. 2 boincer umatlas 217282087 Jun  2 19:33 EVNT.45006593._000256.pool.root.1
[2025-06-02 20:30:12] -rw-r--r--. 2 boincer umatlas     15093 Jun  2 19:33 start_atlas.sh
[2025-06-02 20:30:12] drwxrwx--x. 2 boincer umatlas      4096 Jun  2 19:33 shared
[2025-06-02 20:30:12] -rw-r--r--. 2 boincer umatlas    508874 Jun  2 19:33 input.tar.gz
[2025-06-02 20:30:12] -rw-r--r--. 1 boincer umatlas         0 Jun  2 19:33 boinc_lockfile
[2025-06-02 20:30:12] -rw-r--r--. 1 boincer umatlas      2521 Jun  2 19:33 pandaJob.out
[2025-06-02 20:30:12] -rw-------. 1 boincer umatlas    988081 Jun  2 19:33 agis_schedconf.cvmfs.json
[2025-06-02 20:30:12] -rw-------. 1 boincer umatlas   1603667 Jun  2 19:33 agis_ddmendpoints.agis.ALL.json
[2025-06-02 20:30:12] drwx------. 4 boincer umatlas      4096 Jun  2 19:33 pilot3
[2025-06-02 20:30:12] -rw-------. 1 boincer umatlas 176872186 Jun  2 20:29 HITS.45006595._006398.pool.root.1
[2025-06-02 20:30:12] -rw-r--r--. 1 boincer umatlas      6937 Jun  2 20:29 init_data.xml
[2025-06-02 20:30:12] -rw-r--r--. 1 boincer umatlas       529 Jun  2 20:29 boinc_task_state.xml
[2025-06-02 20:30:12] -rw-------. 1 boincer umatlas        95 Jun  2 20:29 pilot_heartbeat.json
[2025-06-02 20:30:12] -rw-------. 1 boincer umatlas      1026 Jun  2 20:29 memory_monitor_summary.json
[2025-06-02 20:30:12] -rw-------. 1 boincer umatlas    302205 Jun  2 20:29 log.45006595._006398.job.log.tgz.1
[2025-06-02 20:30:12] -rw-------. 1 boincer umatlas      7676 Jun  2 20:29 heartbeat.json
[2025-06-02 20:30:12] -rw-r--r--. 1 boincer umatlas        27 Jun  2 20:30 wrapper_checkpoint.txt
[2025-06-02 20:30:12] -rw-r--r--. 1 boincer umatlas      8192 Jun  2 20:30 boinc_mmap_file
[2025-06-02 20:30:12] -rw-------. 1 boincer umatlas      4612 Jun  2 20:30 pilotlog.txt
[2025-06-02 20:30:12] -rw-------. 1 boincer umatlas    343283 Jun  2 20:30 log.45006595._006398.job.log.1
[2025-06-02 20:30:12] -rw-------. 1 boincer umatlas       357 Jun  2 20:30 output.list
[2025-06-02 20:30:12] -rw-r--r--. 1 boincer umatlas       620 Jun  2 20:30 runtime_log
[2025-06-02 20:30:12] -rw-------. 1 boincer umatlas    665600 Jun  2 20:30 result.tar.gz
[2025-06-02 20:30:12] -rw-------. 1 boincer umatlas       650 Jun  2 20:30 ykOLDmsVOg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmKrfKDmyqQvJn.diag
[2025-06-02 20:30:12] -rw-r--r--. 1 boincer umatlas      8654 Jun  2 20:30 runtime_log.err
[2025-06-02 20:30:12] -rw-r--r--. 1 boincer umatlas     21327 Jun  2 20:30 stderr.txt
[2025-06-02 20:30:12] HITS file was successfully produced:
[2025-06-02 20:30:12] -rw-------. 1 boincer umatlas 176872186 Jun  2 20:29 shared/HITS.pool.root.1
[2025-06-02 20:30:12]  *** Contents of shared directory: ***
[2025-06-02 20:30:12] total 386096
[2025-06-02 20:30:12] -rw-r--r--. 2 boincer umatlas 217282087 Jun  2 19:33 ATLAS.root_0
[2025-06-02 20:30:12] -rw-r--r--. 2 boincer umatlas     15093 Jun  2 19:33 start_atlas.sh
[2025-06-02 20:30:12] -rw-r--r--. 2 boincer umatlas    508874 Jun  2 19:33 input.tar.gz
[2025-06-02 20:30:12] -rw-------. 1 boincer umatlas 176872186 Jun  2 20:29 HITS.pool.root.1
[2025-06-02 20:30:12] -rw-------. 1 boincer umatlas    665600 Jun  2 20:30 result.tar.gz
20:30:13 (3197079): run_atlas exited; CPU time 24559.667717
20:30:13 (3197079): called boinc_finish(0)

</stderr_txt>
]]>

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