Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:35:54 (24418): wrapper (7.7.26015): starting
09:35:54 (24418): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 09:35:54] Arguments: --nthreads 8
[2025-06-03 09:35:54] Threads: 8
[2025-06-03 09:35:54] Checking for CVMFS
[2025-06-03 09:35:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 09:35:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 09:35:55] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 09:35:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 09:35:56] 2.11.2.0 1304 31472 89632 146734 1 16 20543767 25165824 4634 130560 0 16724371 99.829 17351066 1961 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 09:35:56] CVMFS is ok
[2025-06-03 09:35:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 09:35:56] Checking for apptainer binary...
[2025-06-03 09:35:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 09:35:56] Running /usr/bin/apptainer --version
[2025-06-03 09:35:56] apptainer version 1.3.2-1.el7
[2025-06-03 09:35:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 09:36:08] cg-vwn245.simple-grid.lan
[2025-06-03 09:36:08] apptainer works
[2025-06-03 09:36:08] Set ATHENA_PROC_NUMBER=8
[2025-06-03 09:36:08] Set ATHENA_CORE_NUMBER=8
[2025-06-03 09:36:08] Starting ATLAS job with PandaID=6677396741
[2025-06-03 09:36:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 13:41:25]  *** The last 200 lines of the pilot log: ***
[2025-06-03 13:41:25] 2025-06-03 11:30:11,645 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 13:41:25] 2025-06-03 11:30:11,645 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 13:41:25] 2025-06-03 11:30:11,646 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 13:41:25] 2025-06-03 11:30:11,646 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 13:41:25] 2025-06-03 11:30:11,651 | INFO     | fitting pss+swap vs Time
[2025-06-03 13:41:25] 2025-06-03 11:30:11,652 | INFO     | sum of square deviations: 3212467674.5
[2025-06-03 13:41:25] 2025-06-03 11:30:11,654 | INFO     | sum of deviations: 50018744620.000015
[2025-06-03 13:41:25] 2025-06-03 11:30:11,654 | INFO     | mean x: 1748943479.5
[2025-06-03 13:41:25] 2025-06-03 11:30:11,654 | INFO     | mean y: 2449538.2660550456
[2025-06-03 13:41:25] 2025-06-03 11:30:11,654 | INFO     | -- intersect: -27228939574.323357
[2025-06-03 13:41:25] 2025-06-03 11:30:11,655 | INFO     | intersect: -27228939574.323357
[2025-06-03 13:41:25] 2025-06-03 11:30:11,655 | INFO     | chi2: 7.137222070251598
[2025-06-03 13:41:25] 2025-06-03 11:30:11,656 | INFO     | sum of square deviations: 2996454322.0
[2025-06-03 13:41:25] 2025-06-03 11:30:11,657 | INFO     | sum of deviations: 63266541437.0
[2025-06-03 13:41:25] 2025-06-03 11:30:11,658 | INFO     | mean x: 1748943327.0
[2025-06-03 13:41:25] 2025-06-03 11:30:11,658 | INFO     | mean y: 2458702.1971830986
[2025-06-03 13:41:25] 2025-06-03 11:30:11,658 | INFO     | -- intersect: -36924383351.16556
[2025-06-03 13:41:25] 2025-06-03 11:30:11,658 | INFO     | intersect: -36924383351.16556
[2025-06-03 13:41:25] 2025-06-03 11:30:11,658 | INFO     | chi2: 6.440361592569115
[2025-06-03 13:41:25] 2025-06-03 11:30:11,658 | INFO     | current chi2=6.440361592569115 (change=9.763749408709621 %)
[2025-06-03 13:41:25] 2025-06-03 11:30:11,659 | INFO     | right removable region: 212
[2025-06-03 13:41:25] 2025-06-03 11:30:11,659 | INFO     | sum of square deviations: 2996454322.0
[2025-06-03 13:41:25] 2025-06-03 11:30:11,661 | INFO     | sum of deviations: -25641061835.999992
[2025-06-03 13:41:25] 2025-06-03 11:30:11,661 | INFO     | mean x: 1748943632.0
[2025-06-03 13:41:25] 2025-06-03 11:30:11,661 | INFO     | mean y: 2502905.469483568
[2025-06-03 13:41:25] 2025-06-03 11:30:11,661 | INFO     | -- intersect: 14968448318.533058
[2025-06-03 13:41:25] 2025-06-03 11:30:11,661 | INFO     | intersect: 14968448318.533058
[2025-06-03 13:41:25] 2025-06-03 11:30:11,666 | INFO     | chi2: 2.242086062064825
[2025-06-03 13:41:25] 2025-06-03 11:30:11,666 | INFO     | current chi2=2.242086062064825 (change=68.58601231689309 %)
[2025-06-03 13:41:25] 2025-06-03 11:30:11,667 | INFO     | sum of square deviations: 2790348132.0
[2025-06-03 13:41:25] 2025-06-03 11:30:11,668 | INFO     | sum of deviations: -59228668427.5
[2025-06-03 13:41:25] 2025-06-03 11:30:11,668 | INFO     | mean x: 1748943784.5
[2025-06-03 13:41:25] 2025-06-03 11:30:11,669 | INFO     | mean y: 2527569.0048076925
[2025-06-03 13:41:25] 2025-06-03 11:30:11,669 | INFO     | -- intersect: 37126071517.70931
[2025-06-03 13:41:25] 2025-06-03 11:30:11,669 | INFO     | intersect: 37126071517.70931
[2025-06-03 13:41:25] 2025-06-03 11:30:11,669 | INFO     | chi2: 0.9984597343189906
[2025-06-03 13:41:25] 2025-06-03 11:30:11,669 | INFO     | current chi2=0.9984597343189906 (change=55.467376956999146 %)
[2025-06-03 13:41:25] 2025-06-03 11:30:11,670 | INFO     | sum of square deviations: 2593916542.0
[2025-06-03 13:41:25] 2025-06-03 11:30:11,671 | INFO     | sum of deviations: -57661848870.99999
[2025-06-03 13:41:25] 2025-06-03 11:30:11,671 | INFO     | mean x: 1748943937.0
[2025-06-03 13:41:25] 2025-06-03 11:30:11,672 | INFO     | mean y: 2526312.290640394
[2025-06-03 13:41:25] 2025-06-03 11:30:11,672 | INFO     | -- intersect: 38880932516.288605
[2025-06-03 13:41:25] 2025-06-03 11:30:11,672 | INFO     | intersect: 38880932516.288605
[2025-06-03 13:41:25] 2025-06-03 11:30:11,672 | INFO     | chi2: 0.9828314262398545
[2025-06-03 13:41:25] 2025-06-03 11:30:11,672 | INFO     | current chi2=0.9828314262398545 (change=1.5652416959804103 %)
[2025-06-03 13:41:25] 2025-06-03 11:30:11,672 | INFO     | left removable region: 30
[2025-06-03 13:41:25] 2025-06-03 11:30:11,673 | INFO     | sum of square deviations: 1869302025.5
[2025-06-03 13:41:25] 2025-06-03 11:30:11,674 | INFO     | sum of deviations: -24636938487.5
[2025-06-03 13:41:25] 2025-06-03 11:30:11,674 | INFO     | mean x: 1748944211.5
[2025-06-03 13:41:25] 2025-06-03 11:30:11,674 | INFO     | mean y: 2521717.456043956
[2025-06-03 13:41:25] 2025-06-03 11:30:11,674 | INFO     | -- intersect: 23053173976.429207
[2025-06-03 13:41:25] 2025-06-03 11:30:11,674 | INFO     | intersect: 23053173976.429207
[2025-06-03 13:41:25] 2025-06-03 11:30:11,675 | INFO     | chi2: 0.1605089910698209
[2025-06-03 13:41:25] 2025-06-03 11:30:11,675 | INFO     | -- intersect: 23053173976.429207
[2025-06-03 13:41:25] 2025-06-03 11:30:11,675 | INFO     | current memory leak: -13.18 B/s (using 182 data points, chi2=0.16)
[2025-06-03 13:41:25] 2025-06-03 11:30:11,681 | INFO     | ..............................
[2025-06-03 13:41:25] 2025-06-03 11:30:11,681 | INFO     | . Timing measurements:
[2025-06-03 13:41:25] 2025-06-03 11:30:11,682 | INFO     | . get job = 0 s
[2025-06-03 13:41:25] 2025-06-03 11:30:11,682 | INFO     | . initial setup = 10 s
[2025-06-03 13:41:25] 2025-06-03 11:30:11,682 | INFO     | . payload setup = 154 s
[2025-06-03 13:41:25] 2025-06-03 11:30:11,682 | INFO     | . stage-in = 0 s
[2025-06-03 13:41:25] 2025-06-03 11:30:11,682 | INFO     | . payload execution = 13413 s
[2025-06-03 13:41:25] 2025-06-03 11:30:11,682 | INFO     | . stage-out = 4 s
[2025-06-03 13:41:25] 2025-06-03 11:30:11,682 | INFO     | . log creation = 1 s
[2025-06-03 13:41:25] 2025-06-03 11:30:11,682 | INFO     | ..............................
[2025-06-03 13:41:25] 2025-06-03 11:30:11,865 | INFO     | 
[2025-06-03 13:41:25] 2025-06-03 11:30:11,865 | INFO     | job summary report
[2025-06-03 13:41:25] 2025-06-03 11:30:11,865 | INFO     | --------------------------------------------------
[2025-06-03 13:41:25] 2025-06-03 11:30:11,865 | INFO     | PanDA job id: 6677396741
[2025-06-03 13:41:25] 2025-06-03 11:30:11,865 | INFO     | task id: 45006595
[2025-06-03 13:41:25] 2025-06-03 11:30:11,865 | INFO     | errors: (none)
[2025-06-03 13:41:25] 2025-06-03 11:30:11,866 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 13:41:25] 2025-06-03 11:30:11,866 | INFO     | pilot state: finished 
[2025-06-03 13:41:25] 2025-06-03 11:30:11,866 | INFO     | transexitcode: 0
[2025-06-03 13:41:25] 2025-06-03 11:30:11,866 | INFO     | exeerrorcode: 0
[2025-06-03 13:41:25] 2025-06-03 11:30:11,866 | INFO     | exeerrordiag: 
[2025-06-03 13:41:25] 2025-06-03 11:30:11,866 | INFO     | exitcode: 0
[2025-06-03 13:41:25] 2025-06-03 11:30:11,866 | INFO     | exitmsg: OK
[2025-06-03 13:41:25] 2025-06-03 11:30:11,866 | INFO     | cpuconsumptiontime: 49014 s
[2025-06-03 13:41:25] 2025-06-03 11:30:11,867 | INFO     | nevents: 400
[2025-06-03 13:41:25] 2025-06-03 11:30:11,867 | INFO     | neventsw: 0
[2025-06-03 13:41:25] 2025-06-03 11:30:11,867 | INFO     | pid: 7437
[2025-06-03 13:41:25] 2025-06-03 11:30:11,867 | INFO     | pgrp: 7437
[2025-06-03 13:41:25] 2025-06-03 11:30:11,867 | INFO     | corecount: 8
[2025-06-03 13:41:25] 2025-06-03 11:30:11,867 | INFO     | event service: False
[2025-06-03 13:41:25] 2025-06-03 11:30:11,867 | INFO     | sizes: {0: 2405012, 1: 2405211, 12: 2405211, 23: 2405239, 34: 2405267, 44: 2405295, 55: 2405451, 66: 2405479, 77: 2405507, 84: 2405769, 87: 2405797, 13572: 2435699
[2025-06-03 13:41:25] 2025-06-03 11:30:11,867 | INFO     | --------------------------------------------------
[2025-06-03 13:41:25] 2025-06-03 11:30:11,867 | INFO     | 
[2025-06-03 13:41:25] 2025-06-03 11:30:11,868 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-06-03 13:41:25] 2025-06-03 11:30:12,114 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 13:41:25] 2025-06-03 11:30:12,115 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 13:41:25] 2025-06-03 11:30:12,115 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 13:41:25] 2025-06-03 11:30:12,115 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 13:41:25] 2025-06-03 11:30:12,115 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 13:41:25] 2025-06-03 11:30:12,115 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 13:41:25] 2025-06-03 11:30:12,115 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 13:41:25] 2025-06-03 11:30:12,115 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 13:41:25] 2025-06-03 11:30:12,115 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 13:41:25] 2025-06-03 11:30:12,115 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 13:41:25] 2025-06-03 11:30:12,116 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 13:41:25] 2025-06-03 11:30:12,116 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 13:41:25] 2025-06-03 11:30:12,116 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 13:41:25] 2025-06-03 11:30:12,116 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 13:41:25] 2025-06-03 11:30:12,116 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 13:41:25] 2025-06-03 11:30:12,116 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 13:41:25] 2025-06-03 11:30:12,116 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 13:41:25] 2025-06-03 11:30:12,116 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 13:41:25] 2025-06-03 11:30:12,116 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 13:41:25] 2025-06-03 11:30:12,117 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 13:41:25] 2025-06-03 11:30:12,117 | INFO     | job 6677396741 has completed (purged errors)
[2025-06-03 13:41:25] 2025-06-03 11:30:12,117 | INFO     | overall cleanup function is called
[2025-06-03 13:41:25] 2025-06-03 11:30:13,126 | INFO     | --- collectZombieJob: --- 10, [7437]
[2025-06-03 13:41:25] 2025-06-03 11:30:13,126 | INFO     | zombie collector waiting for pid 7437
[2025-06-03 13:41:25] 2025-06-03 11:30:13,126 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 13:41:25] 2025-06-03 11:30:13,126 | INFO     | collected zombie processes
[2025-06-03 13:41:25] 2025-06-03 11:30:13,126 | INFO     | will attempt to kill all subprocesses of pid=7437
[2025-06-03 13:41:25] 2025-06-03 11:30:13,280 | INFO     | process IDs to be killed: [7437] (in reverse order)
[2025-06-03 13:41:25] 2025-06-03 11:30:13,728 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 13:41:25] 2025-06-03 11:30:13,729 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 13:41:25] 2025-06-03 11:30:13,732 | INFO     | did not find any defunct processes belonging to 7437
[2025-06-03 13:41:25] 2025-06-03 11:30:13,735 | INFO     | did not find any defunct processes belonging to 7437
[2025-06-03 13:41:25] 2025-06-03 11:30:13,735 | INFO     | ready for new job
[2025-06-03 13:41:25] 2025-06-03 11:30:13,736 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 13:41:25] 2025-06-03 11:30:13,738 | INFO     | **************************************
[2025-06-03 13:41:25] 2025-06-03 11:30:13,738 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 13:41:25] 2025-06-03 11:30:13,738 | INFO     | **************************************
[2025-06-03 13:41:25] 2025-06-03 11:30:13,738 | INFO     | 
[2025-06-03 13:41:25] 2025-06-03 11:30:13,738 | INFO     | pilot is running in a VM
[2025-06-03 13:41:25] 2025-06-03 11:30:13,739 | INFO     | architecture information:
[2025-06-03 13:41:25] 2025-06-03 11:30:13,747 | INFO     | executing command: cat /etc/os-release
[2025-06-03 13:41:25] 2025-06-03 11:30:13,814 | INFO     | cat /etc/os-release:
[2025-06-03 13:41:25] NAME="CentOS Linux"
[2025-06-03 13:41:25] VERSION="7 (Core)"
[2025-06-03 13:41:25] ID="centos"
[2025-06-03 13:41:25] ID_LIKE="rhel fedora"
[2025-06-03 13:41:25] VERSION_ID="7"
[2025-06-03 13:41:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 13:41:25] ANSI_COLOR="0;31"
[2025-06-03 13:41:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 13:41:25] HOME_URL="https://www.centos.org/"
[2025-06-03 13:41:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 13:41:25] 
[2025-06-03 13:41:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 13:41:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 13:41:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 13:41:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 13:41:25] 
[2025-06-03 13:41:25] 2025-06-03 11:30:13,814 | INFO     | **************************************
[2025-06-03 13:41:25] 2025-06-03 11:30:14,318 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-06-03 13:41:25] 2025-06-03 11:30:14,499 | INFO     | sufficient remaining disk space (497015586816 B)
[2025-06-03 13:41:25] 2025-06-03 11:30:14,499 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 13:41:25] 2025-06-03 11:30:14,499 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 13:41:25] 2025-06-03 11:30:14,499 | INFO     | update_server=False
[2025-06-03 13:41:25] 2025-06-03 11:30:14,500 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 13:41:25] 2025-06-03 11:30:14,501 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 13:41:25] 2025-06-03 11:30:14,501 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 13:41:25] 2025-06-03 11:30:14,501 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 13:41:25] 2025-06-03 11:30:14,501 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 13:41:25] 2025-06-03 11:30:14,806 | INFO     | all payload control threads have been joined
[2025-06-03 13:41:25] 2025-06-03 11:30:14,998 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:41:25] 2025-06-03 11:30:14,998 | INFO     | aborting loop
[2025-06-03 13:41:25] 2025-06-03 11:30:15,032 | INFO     | all data control threads have been joined
[2025-06-03 13:41:25] 2025-06-03 11:30:15,506 | INFO     | [job] retrieve thread has finished
[2025-06-03 13:41:25] 2025-06-03 11:30:15,526 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 13:41:25] 2025-06-03 11:30:15,636 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 13:41:25] 2025-06-03 11:30:15,654 | INFO     | [job] validate thread has finished
[2025-06-03 13:41:25] 2025-06-03 11:30:15,731 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 13:41:25] 2025-06-03 11:30:15,812 | INFO     | [payload] control thread has finished
[2025-06-03 13:41:25] 2025-06-03 11:30:16,004 | INFO     | [job] job monitor thread has finished
[2025-06-03 13:41:25] 2025-06-03 11:30:16,037 | INFO     | [data] control thread has finished
[2025-06-03 13:41:25] 2025-06-03 11:30:16,043 | INFO     | all job control threads have been joined
[2025-06-03 13:41:25] 2025-06-03 11:30:16,140 | INFO     | [payload] failed_post thread has finished
[2025-06-03 13:41:25] 2025-06-03 11:30:16,279 | INFO     | [data] copytool_in thread has finished
[2025-06-03 13:41:25] 2025-06-03 11:30:16,391 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 13:41:25] 2025-06-03 11:30:16,879 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:41:25] 2025-06-03 11:30:16,990 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 13:41:25] 2025-06-03 11:30:17,049 | INFO     | [job] control thread has finished
[2025-06-03 13:41:25] 2025-06-03 11:30:17,103 | INFO     | [payload] validate_post thread has finished
[2025-06-03 13:41:25] 2025-06-03 11:30:17,533 | INFO     | [data] copytool_out thread has finished
[2025-06-03 13:41:25] 2025-06-03 11:30:17,885 | INFO     | [job] queue monitor thread has finished
[2025-06-03 13:41:25] 2025-06-03 11:30:19,645 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 13:41:25] 2025-06-03 11:30:24,747 | INFO     | job.realtimelogging is not enabled
[2025-06-03 13:41:25] 2025-06-03 11:30:25,753 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 13:41:25] 2025-06-03 11:30:27,584 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140025248180032)>', '<ExcThread(monitor, started 140024590890752)>']
[2025-06-03 13:41:25] 2025-06-03 11:30:28,587 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 13:41:25] 2025-06-03 11:30:28,587 | INFO     | [monitor] control thread has ended
[2025-06-03 13:41:25] 2025-06-03 11:30:32,610 | INFO     | all workflow threads have been joined
[2025-06-03 13:41:25] 2025-06-03 11:30:32,610 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 13:41:25] 2025-06-03 11:30:32,610 | INFO     | traces error code: 0
[2025-06-03 13:41:25] 2025-06-03 11:30:32,611 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 13:41:25] 2025-06-03 11:30:33,001 [wrapper] ==== pilot stdout END ====
[2025-06-03 13:41:25] 2025-06-03 11:30:33,101 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 13:41:25] 2025-06-03 11:30:33,232 [wrapper] pilotpid: 29236
[2025-06-03 13:41:25] 2025-06-03 11:30:33,328 [wrapper] Pilot exit status: 0
[2025-06-03 13:41:25] 2025-06-03 11:30:33,799 [wrapper] pandaids: 6677396741
[2025-06-03 13:41:25] 2025-06-03 11:30:34,808 [wrapper] cleanup supervisor_pilot  1907 29237
[2025-06-03 13:41:25] 2025-06-03 11:30:34,892 [wrapper] Test setup, not cleaning
[2025-06-03 13:41:25] 2025-06-03 11:30:34,992 [wrapper] apfmon messages muted
[2025-06-03 13:41:25] 2025-06-03 11:30:35,085 [wrapper] ==== wrapper stdout END ====
[2025-06-03 13:41:25] 2025-06-03 11:30:35,180 [wrapper] ==== wrapper stderr END ====
[2025-06-03 13:41:25]  *** Error codes and diagnostics ***
[2025-06-03 13:41:25]     "exeErrorCode": 0,
[2025-06-03 13:41:25]     "exeErrorDiag": "",
[2025-06-03 13:41:25]     "pilotErrorCode": 0,
[2025-06-03 13:41:25]     "pilotErrorDiag": "",
[2025-06-03 13:41:25]  *** Listing of results directory ***
[2025-06-03 13:41:25] total 392692
[2025-06-03 13:41:25] -rw-r--r--. 1 boinc boinc    495897 Jun  2 21:34 pilot3.tar.gz
[2025-06-03 13:41:25] -rw-r--r--. 1 boinc boinc      5111 Jun  2 21:44 queuedata.json
[2025-06-03 13:41:25] -rwx------. 1 boinc boinc     37140 Jun  2 21:44 runpilot2-wrapper.sh
[2025-06-03 13:41:25] -rw-r--r--. 1 boinc boinc       100 Jun  3 09:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 13:41:25] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 09:35 run_atlas
[2025-06-03 13:41:25] -rw-r--r--. 1 boinc boinc       105 Jun  3 09:35 job.xml
[2025-06-03 13:41:25] -rw-r--r--. 2 boinc boinc 213623758 Jun  3 09:35 EVNT.45006593._000401.pool.root.1
[2025-06-03 13:41:25] -rw-r--r--. 1 boinc boinc      6393 Jun  3 09:35 init_data.xml
[2025-06-03 13:41:25] -rw-r--r--. 2 boinc boinc     15093 Jun  3 09:35 start_atlas.sh
[2025-06-03 13:41:25] drwxrwx--x. 2 boinc boinc        68 Jun  3 09:35 shared
[2025-06-03 13:41:25] -rw-r--r--. 2 boinc boinc    508873 Jun  3 09:35 input.tar.gz
[2025-06-03 13:41:25] -rw-r--r--. 1 boinc boinc         0 Jun  3 09:35 boinc_lockfile
[2025-06-03 13:41:25] -rw-r--r--. 1 boinc boinc      2524 Jun  3 09:36 pandaJob.out
[2025-06-03 13:41:25] -rw-------. 1 boinc boinc    985499 Jun  3 09:39 agis_schedconf.cvmfs.json
[2025-06-03 13:41:25] drwx------. 4 boinc boinc      4096 Jun  3 09:39 pilot3
[2025-06-03 13:41:25] -rw-------. 1 boinc boinc 181574937 Jun  3 13:27 HITS.45006595._010006.pool.root.1
[2025-06-03 13:41:25] -rw-r--r--. 1 boinc boinc       531 Jun  3 13:27 boinc_task_state.xml
[2025-06-03 13:41:25] -rw-------. 1 boinc boinc      1018 Jun  3 13:28 memory_monitor_summary.json
[2025-06-03 13:41:25] -rw-------. 1 boinc boinc   1603667 Jun  3 13:28 agis_ddmendpoints.agis.ALL.json
[2025-06-03 13:41:25] -rw-------. 1 boinc boinc    371357 Jun  3 13:28 log.45006595._010006.job.log.tgz.1
[2025-06-03 13:41:25] -rw-------. 1 boinc boinc        95 Jun  3 13:29 pilot_heartbeat.json
[2025-06-03 13:41:25] -rw-------. 1 boinc boinc      7698 Jun  3 13:30 heartbeat.json
[2025-06-03 13:41:25] -rw-------. 1 boinc boinc      4612 Jun  3 13:30 pilotlog.txt
[2025-06-03 13:41:25] -rw-------. 1 boinc boinc   1175619 Jun  3 13:30 log.45006595._010006.job.log.1
[2025-06-03 13:41:25] -rw-------. 1 boinc boinc       357 Jun  3 13:30 output.list
[2025-06-03 13:41:25] -rw-r--r--. 1 boinc boinc       620 Jun  3 13:30 runtime_log
[2025-06-03 13:41:25] -rw-------. 1 boinc boinc   1566720 Jun  3 13:30 result.tar.gz
[2025-06-03 13:41:25] -rw-r--r--. 1 boinc boinc      8673 Jun  3 13:30 runtime_log.err
[2025-06-03 13:41:25] -rw-------. 1 boinc boinc       656 Jun  3 13:30 oPbNDmBGQg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQNgKDmL3obnn.diag
[2025-06-03 13:41:25] -rw-r--r--. 1 boinc boinc      8192 Jun  3 13:41 boinc_mmap_file
[2025-06-03 13:41:25] -rw-r--r--. 1 boinc boinc        28 Jun  3 13:41 wrapper_checkpoint.txt
[2025-06-03 13:41:25] -rw-r--r--. 1 boinc boinc     20501 Jun  3 13:41 stderr.txt
[2025-06-03 13:41:25] HITS file was successfully produced:
[2025-06-03 13:41:25] -rw-------. 1 boinc boinc 181574937 Jun  3 13:27 shared/HITS.pool.root.1
[2025-06-03 13:41:25]  *** Contents of shared directory: ***
[2025-06-03 13:41:25] total 387988
[2025-06-03 13:41:25] -rw-r--r--. 2 boinc boinc 213623758 Jun  3 09:35 ATLAS.root_0
[2025-06-03 13:41:25] -rw-r--r--. 2 boinc boinc     15093 Jun  3 09:35 start_atlas.sh
[2025-06-03 13:41:25] -rw-r--r--. 2 boinc boinc    508873 Jun  3 09:35 input.tar.gz
[2025-06-03 13:41:25] -rw-------. 1 boinc boinc 181574937 Jun  3 13:27 HITS.pool.root.1
[2025-06-03 13:41:25] -rw-------. 1 boinc boinc   1566720 Jun  3 13:30 result.tar.gz
13:41:27 (24418): run_atlas exited; CPU time 49199.500395
13:41:27 (24418): called boinc_finish(0)

</stderr_txt>
]]>

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