Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:44:57 (29596): wrapper (7.7.26015): starting
08:44:57 (29596): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 08:44:57] Arguments: --nthreads 8
[2025-06-03 08:44:57] Threads: 8
[2025-06-03 08:44:57] Checking for CVMFS
[2025-06-03 08:44:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 08:44:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 08:44:58] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 08:44:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 08:44:59] 2.11.2.0 3140 31447 92900 146731 1 59 21777206 25165824 4635 130560 0 15805542 99.838 17546943 2325 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 08:44:59] CVMFS is ok
[2025-06-03 08:44:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 08:44:59] Checking for apptainer binary...
[2025-06-03 08:44:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 08:44:59] Running /usr/bin/apptainer --version
[2025-06-03 08:45:00] apptainer version 1.3.2-1.el7
[2025-06-03 08:45:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 08:45:12] cg-vwn243.simple-grid.lan
[2025-06-03 08:45:12] apptainer works
[2025-06-03 08:45:12] Set ATHENA_PROC_NUMBER=8
[2025-06-03 08:45:12] Set ATHENA_CORE_NUMBER=8
[2025-06-03 08:45:12] Starting ATLAS job with PandaID=6677382949
[2025-06-03 08:45:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 14:14:33]  *** The last 200 lines of the pilot log: ***
[2025-06-03 14:14:33] 2025-06-03 10:44:15,516 | INFO     | extracted standard info from prmon json
[2025-06-03 14:14:33] 2025-06-03 10:44:15,516 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 14:14:33] 2025-06-03 10:44:15,516 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 14:14:33] 2025-06-03 10:44:15,517 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 14:14:33] 2025-06-03 10:44:15,517 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 14:14:33] 2025-06-03 10:44:15,522 | INFO     | fitting pss+swap vs Time
[2025-06-03 14:14:33] 2025-06-03 10:44:15,523 | INFO     | sum of square deviations: 3438620752.0
[2025-06-03 14:14:33] 2025-06-03 10:44:15,530 | INFO     | sum of deviations: 45375409919.0
[2025-06-03 14:14:33] 2025-06-03 10:44:15,530 | INFO     | mean x: 1748940582.0
[2025-06-03 14:14:33] 2025-06-03 10:44:15,530 | INFO     | mean y: 2438716.5067264573
[2025-06-03 14:14:33] 2025-06-03 10:44:15,531 | INFO     | -- intersect: -23076261016.828808
[2025-06-03 14:14:33] 2025-06-03 10:44:15,531 | INFO     | intersect: -23076261016.828808
[2025-06-03 14:14:33] 2025-06-03 10:44:15,531 | INFO     | chi2: 7.077858336673816
[2025-06-03 14:14:33] 2025-06-03 10:44:15,532 | INFO     | sum of square deviations: 3212467674.5
[2025-06-03 14:14:33] 2025-06-03 10:44:15,533 | INFO     | sum of deviations: 73994121241.00002
[2025-06-03 14:14:33] 2025-06-03 10:44:15,534 | INFO     | mean x: 1748940429.5
[2025-06-03 14:14:33] 2025-06-03 10:44:15,534 | INFO     | mean y: 2457740.5596330273
[2025-06-03 14:14:33] 2025-06-03 10:44:15,534 | INFO     | -- intersect: -40281623936.26275
[2025-06-03 14:14:33] 2025-06-03 10:44:15,534 | INFO     | intersect: -40281623936.26275
[2025-06-03 14:14:33] 2025-06-03 10:44:15,534 | INFO     | chi2: 5.563251221365906
[2025-06-03 14:14:33] 2025-06-03 10:44:15,535 | INFO     | current chi2=5.563251221365906 (change=21.3992290218638 %)
[2025-06-03 14:14:33] 2025-06-03 10:44:15,535 | INFO     | right removable region: 217
[2025-06-03 14:14:33] 2025-06-03 10:44:15,535 | INFO     | sum of square deviations: 3212467674.5
[2025-06-03 14:14:33] 2025-06-03 10:44:15,537 | INFO     | sum of deviations: -29121850942.5
[2025-06-03 14:14:33] 2025-06-03 10:44:15,537 | INFO     | mean x: 1748940734.5
[2025-06-03 14:14:33] 2025-06-03 10:44:15,537 | INFO     | mean y: 2488890.848623853
[2025-06-03 14:14:33] 2025-06-03 10:44:15,537 | INFO     | -- intersect: 15857089322.058493
[2025-06-03 14:14:33] 2025-06-03 10:44:15,538 | INFO     | intersect: 15857089322.058493
[2025-06-03 14:14:33] 2025-06-03 10:44:15,538 | INFO     | chi2: 2.6407485451897332
[2025-06-03 14:14:33] 2025-06-03 10:44:15,538 | INFO     | current chi2=2.6407485451897332 (change=62.69000565458149 %)
[2025-06-03 14:14:33] 2025-06-03 10:44:15,539 | INFO     | sum of square deviations: 2996454322.0
[2025-06-03 14:14:33] 2025-06-03 10:44:15,540 | INFO     | sum of deviations: -55111173460.0
[2025-06-03 14:14:33] 2025-06-03 10:44:15,541 | INFO     | mean x: 1748940887.0
[2025-06-03 14:14:33] 2025-06-03 10:44:15,541 | INFO     | mean y: 2507075.5539906104
[2025-06-03 14:14:33] 2025-06-03 10:44:15,541 | INFO     | -- intersect: 32169252914.8197
[2025-06-03 14:14:33] 2025-06-03 10:44:15,541 | INFO     | intersect: 32169252914.8197
[2025-06-03 14:14:33] 2025-06-03 10:44:15,541 | INFO     | chi2: 1.8498436720306934
[2025-06-03 14:14:33] 2025-06-03 10:44:15,542 | INFO     | current chi2=1.8498436720306934 (change=29.95002589700242 %)
[2025-06-03 14:14:33] 2025-06-03 10:44:15,542 | INFO     | sum of square deviations: 2790348132.0
[2025-06-03 14:14:33] 2025-06-03 10:44:15,544 | INFO     | sum of deviations: -56032933815.5
[2025-06-03 14:14:33] 2025-06-03 10:44:15,544 | INFO     | mean x: 1748941039.5
[2025-06-03 14:14:33] 2025-06-03 10:44:15,544 | INFO     | mean y: 2507731.706730769
[2025-06-03 14:14:33] 2025-06-03 10:44:15,544 | INFO     | -- intersect: 35122963272.5981
[2025-06-03 14:14:33] 2025-06-03 10:44:15,544 | INFO     | intersect: 35122963272.5981
[2025-06-03 14:14:33] 2025-06-03 10:44:15,553 | INFO     | chi2: 1.8324686467047835
[2025-06-03 14:14:33] 2025-06-03 10:44:15,553 | INFO     | current chi2=1.8324686467047835 (change=0.9392699279737656 %)
[2025-06-03 14:14:33] 2025-06-03 10:44:15,553 | INFO     | left removable region: 30
[2025-06-03 14:14:33] 2025-06-03 10:44:15,554 | INFO     | sum of square deviations: 2027639878.0
[2025-06-03 14:14:33] 2025-06-03 10:44:15,555 | INFO     | sum of deviations: -6410607363.999999
[2025-06-03 14:14:33] 2025-06-03 10:44:15,555 | INFO     | mean x: 1748941314.0
[2025-06-03 14:14:33] 2025-06-03 10:44:15,556 | INFO     | mean y: 2511999.6363636362
[2025-06-03 14:14:33] 2025-06-03 10:44:15,563 | INFO     | -- intersect: 5531983079.970006
[2025-06-03 14:14:33] 2025-06-03 10:44:15,563 | INFO     | intersect: 5531983079.970006
[2025-06-03 14:14:33] 2025-06-03 10:44:15,564 | INFO     | chi2: 0.0895316407240574
[2025-06-03 14:14:33] 2025-06-03 10:44:15,564 | INFO     | -- intersect: 5531983079.970006
[2025-06-03 14:14:33] 2025-06-03 10:44:15,564 | INFO     | current memory leak: -3.16 B/s (using 187 data points, chi2=0.09)
[2025-06-03 14:14:33] 2025-06-03 10:44:15,565 | INFO     | ..............................
[2025-06-03 14:14:33] 2025-06-03 10:44:15,565 | INFO     | . Timing measurements:
[2025-06-03 14:14:33] 2025-06-03 10:44:15,565 | INFO     | . get job = 0 s
[2025-06-03 14:14:33] 2025-06-03 10:44:15,565 | INFO     | . initial setup = 13 s
[2025-06-03 14:14:33] 2025-06-03 10:44:15,565 | INFO     | . payload setup = 159 s
[2025-06-03 14:14:33] 2025-06-03 10:44:15,565 | INFO     | . stage-in = 0 s
[2025-06-03 14:14:33] 2025-06-03 10:44:15,566 | INFO     | . payload execution = 13694 s
[2025-06-03 14:14:33] 2025-06-03 10:44:15,566 | INFO     | . stage-out = 4 s
[2025-06-03 14:14:33] 2025-06-03 10:44:15,566 | INFO     | . log creation = 1 s
[2025-06-03 14:14:33] 2025-06-03 10:44:15,566 | INFO     | ..............................
[2025-06-03 14:14:33] 2025-06-03 10:44:16,011 | INFO     | 
[2025-06-03 14:14:33] 2025-06-03 10:44:16,011 | INFO     | job summary report
[2025-06-03 14:14:33] 2025-06-03 10:44:16,011 | INFO     | --------------------------------------------------
[2025-06-03 14:14:33] 2025-06-03 10:44:16,011 | INFO     | PanDA job id: 6677382949
[2025-06-03 14:14:33] 2025-06-03 10:44:16,011 | INFO     | task id: 45006595
[2025-06-03 14:14:33] 2025-06-03 10:44:16,012 | INFO     | errors: (none)
[2025-06-03 14:14:33] 2025-06-03 10:44:16,012 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 14:14:33] 2025-06-03 10:44:16,012 | INFO     | pilot state: finished 
[2025-06-03 14:14:33] 2025-06-03 10:44:16,012 | INFO     | transexitcode: 0
[2025-06-03 14:14:33] 2025-06-03 10:44:16,012 | INFO     | exeerrorcode: 0
[2025-06-03 14:14:33] 2025-06-03 10:44:16,012 | INFO     | exeerrordiag: 
[2025-06-03 14:14:33] 2025-06-03 10:44:16,012 | INFO     | exitcode: 0
[2025-06-03 14:14:33] 2025-06-03 10:44:16,012 | INFO     | exitmsg: OK
[2025-06-03 14:14:33] 2025-06-03 10:44:16,012 | INFO     | cpuconsumptiontime: 49628 s
[2025-06-03 14:14:33] 2025-06-03 10:44:16,013 | INFO     | nevents: 400
[2025-06-03 14:14:33] 2025-06-03 10:44:16,013 | INFO     | neventsw: 0
[2025-06-03 14:14:33] 2025-06-03 10:44:16,013 | INFO     | pid: 17693
[2025-06-03 14:14:33] 2025-06-03 10:44:16,013 | INFO     | pgrp: 17693
[2025-06-03 14:14:33] 2025-06-03 10:44:16,013 | INFO     | corecount: 8
[2025-06-03 14:14:33] 2025-06-03 10:44:16,013 | INFO     | event service: False
[2025-06-03 14:14:33] 2025-06-03 10:44:16,013 | INFO     | sizes: {0: 2405006, 1: 2405205, 12: 2405205, 23: 2405233, 34: 2405261, 44: 2405289, 55: 2405445, 66: 2405473, 77: 2405501, 85: 2405763, 87: 2405791, 13857: 2435696
[2025-06-03 14:14:33] 2025-06-03 10:44:16,013 | INFO     | --------------------------------------------------
[2025-06-03 14:14:33] 2025-06-03 10:44:16,013 | INFO     | 
[2025-06-03 14:14:33] 2025-06-03 10:44:16,014 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-03 14:14:33] 2025-06-03 10:44:16,400 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 14:14:33] 2025-06-03 10:44:16,401 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 14:14:33] 2025-06-03 10:44:16,401 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 14:14:33] 2025-06-03 10:44:16,401 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 14:14:33] 2025-06-03 10:44:16,401 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 14:14:33] 2025-06-03 10:44:16,401 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 14:14:33] 2025-06-03 10:44:16,402 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 14:14:33] 2025-06-03 10:44:16,402 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 14:14:33] 2025-06-03 10:44:16,402 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 14:14:33] 2025-06-03 10:44:16,402 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 14:14:33] 2025-06-03 10:44:16,402 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 14:14:33] 2025-06-03 10:44:16,402 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 14:14:33] 2025-06-03 10:44:16,402 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 14:14:33] 2025-06-03 10:44:16,402 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 14:14:33] 2025-06-03 10:44:16,402 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 14:14:33] 2025-06-03 10:44:16,402 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 14:14:33] 2025-06-03 10:44:16,403 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 14:14:33] 2025-06-03 10:44:16,403 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 14:14:33] 2025-06-03 10:44:16,403 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 14:14:33] 2025-06-03 10:44:16,403 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 14:14:33] 2025-06-03 10:44:16,403 | INFO     | job 6677382949 has completed (purged errors)
[2025-06-03 14:14:33] 2025-06-03 10:44:16,403 | INFO     | overall cleanup function is called
[2025-06-03 14:14:33] 2025-06-03 10:44:17,417 | INFO     | --- collectZombieJob: --- 10, [17693]
[2025-06-03 14:14:33] 2025-06-03 10:44:17,417 | INFO     | zombie collector waiting for pid 17693
[2025-06-03 14:14:33] 2025-06-03 10:44:17,417 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 14:14:33] 2025-06-03 10:44:17,417 | INFO     | collected zombie processes
[2025-06-03 14:14:33] 2025-06-03 10:44:17,418 | INFO     | will attempt to kill all subprocesses of pid=17693
[2025-06-03 14:14:33] 2025-06-03 10:44:17,554 | INFO     | process IDs to be killed: [17693] (in reverse order)
[2025-06-03 14:14:33] 2025-06-03 10:44:18,512 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 14:14:33] 2025-06-03 10:44:18,513 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 14:14:33] 2025-06-03 10:44:18,516 | INFO     | did not find any defunct processes belonging to 17693
[2025-06-03 14:14:33] 2025-06-03 10:44:18,519 | INFO     | did not find any defunct processes belonging to 17693
[2025-06-03 14:14:33] 2025-06-03 10:44:18,520 | INFO     | ready for new job
[2025-06-03 14:14:33] 2025-06-03 10:44:18,520 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 14:14:33] 2025-06-03 10:44:18,522 | INFO     | **************************************
[2025-06-03 14:14:33] 2025-06-03 10:44:18,522 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 14:14:33] 2025-06-03 10:44:18,522 | INFO     | **************************************
[2025-06-03 14:14:33] 2025-06-03 10:44:18,523 | INFO     | 
[2025-06-03 14:14:33] 2025-06-03 10:44:18,523 | INFO     | pilot is running in a VM
[2025-06-03 14:14:33] 2025-06-03 10:44:18,523 | INFO     | architecture information:
[2025-06-03 14:14:33] 2025-06-03 10:44:18,524 | INFO     | executing command: cat /etc/os-release
[2025-06-03 14:14:33] 2025-06-03 10:44:18,594 | INFO     | cat /etc/os-release:
[2025-06-03 14:14:33] NAME="CentOS Linux"
[2025-06-03 14:14:33] VERSION="7 (Core)"
[2025-06-03 14:14:33] ID="centos"
[2025-06-03 14:14:33] ID_LIKE="rhel fedora"
[2025-06-03 14:14:33] VERSION_ID="7"
[2025-06-03 14:14:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 14:14:33] ANSI_COLOR="0;31"
[2025-06-03 14:14:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 14:14:33] HOME_URL="https://www.centos.org/"
[2025-06-03 14:14:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 14:14:33] 
[2025-06-03 14:14:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 14:14:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 14:14:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 14:14:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 14:14:33] 
[2025-06-03 14:14:33] 2025-06-03 10:44:18,594 | INFO     | **************************************
[2025-06-03 14:14:33] 2025-06-03 10:44:19,098 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-03 14:14:33] 2025-06-03 10:44:19,448 | INFO     | sufficient remaining disk space (496985178112 B)
[2025-06-03 14:14:33] 2025-06-03 10:44:19,448 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 14:14:33] 2025-06-03 10:44:19,448 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 14:14:33] 2025-06-03 10:44:19,448 | INFO     | update_server=False
[2025-06-03 14:14:33] 2025-06-03 10:44:19,448 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 14:14:33] 2025-06-03 10:44:19,449 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 14:14:33] 2025-06-03 10:44:19,449 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 14:14:33] 2025-06-03 10:44:19,450 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 14:14:33] 2025-06-03 10:44:19,450 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 14:14:33] 2025-06-03 10:44:19,450 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 14:14:33] 2025-06-03 10:44:19,457 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 14:14:33] 2025-06-03 10:44:19,457 | INFO     | aborting loop
[2025-06-03 14:14:33] 2025-06-03 10:44:19,522 | INFO     | all data control threads have been joined
[2025-06-03 14:14:33] 2025-06-03 10:44:19,661 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 14:14:33] 2025-06-03 10:44:19,954 | INFO     | all payload control threads have been joined
[2025-06-03 14:14:33] 2025-06-03 10:44:20,454 | INFO     | [job] retrieve thread has finished
[2025-06-03 14:14:33] 2025-06-03 10:44:20,463 | INFO     | [job] job monitor thread has finished
[2025-06-03 14:14:33] 2025-06-03 10:44:20,528 | INFO     | [data] control thread has finished
[2025-06-03 14:14:33] 2025-06-03 10:44:20,730 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 14:14:33] 2025-06-03 10:44:20,749 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 14:14:33] 2025-06-03 10:44:20,757 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 14:14:33] 2025-06-03 10:44:20,846 | INFO     | [job] validate thread has finished
[2025-06-03 14:14:33] 2025-06-03 10:44:20,960 | INFO     | [payload] control thread has finished
[2025-06-03 14:14:33] 2025-06-03 10:44:21,130 | INFO     | all job control threads have been joined
[2025-06-03 14:14:33] 2025-06-03 10:44:21,241 | INFO     | [payload] validate_post thread has finished
[2025-06-03 14:14:33] 2025-06-03 10:44:21,455 | INFO     | [data] copytool_out thread has finished
[2025-06-03 14:14:33] 2025-06-03 10:44:21,543 | INFO     | [data] copytool_in thread has finished
[2025-06-03 14:14:33] 2025-06-03 10:44:21,738 | INFO     | [job] queue monitor thread has finished
[2025-06-03 14:14:33] 2025-06-03 10:44:21,750 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 14:14:33] 2025-06-03 10:44:21,751 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 14:14:33] 2025-06-03 10:44:21,862 | INFO     | [payload] failed_post thread has finished
[2025-06-03 14:14:33] 2025-06-03 10:44:22,136 | INFO     | [job] control thread has finished
[2025-06-03 14:14:33] 2025-06-03 10:44:23,670 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 14:14:33] 2025-06-03 10:44:25,370 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139789994456896)>', '<ExcThread(monitor, started 139789550470912)>']
[2025-06-03 14:14:33] 2025-06-03 10:44:25,485 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 14:14:33] 2025-06-03 10:44:25,485 | INFO     | [monitor] control thread has ended
[2025-06-03 14:14:33] 2025-06-03 10:44:30,396 | INFO     | all workflow threads have been joined
[2025-06-03 14:14:33] 2025-06-03 10:44:30,396 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 14:14:33] 2025-06-03 10:44:30,397 | INFO     | traces error code: 0
[2025-06-03 14:14:33] 2025-06-03 10:44:30,397 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 14:14:33] 2025-06-03 10:44:30,738 [wrapper] ==== pilot stdout END ====
[2025-06-03 14:14:33] 2025-06-03 10:44:30,802 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 14:14:33] 2025-06-03 10:44:30,874 [wrapper] pilotpid: 3101
[2025-06-03 14:14:33] 2025-06-03 10:44:30,970 [wrapper] Pilot exit status: 0
[2025-06-03 14:14:33] 2025-06-03 10:44:31,385 [wrapper] pandaids: 6677382949
[2025-06-03 14:14:33] 2025-06-03 10:44:32,283 [wrapper] cleanup supervisor_pilot 11187 3102
[2025-06-03 14:14:33] 2025-06-03 10:44:32,401 [wrapper] Test setup, not cleaning
[2025-06-03 14:14:33] 2025-06-03 10:44:32,491 [wrapper] apfmon messages muted
[2025-06-03 14:14:33] 2025-06-03 10:44:32,602 [wrapper] ==== wrapper stdout END ====
[2025-06-03 14:14:33] 2025-06-03 10:44:32,695 [wrapper] ==== wrapper stderr END ====
[2025-06-03 14:14:33]  *** Error codes and diagnostics ***
[2025-06-03 14:14:33]     "exeErrorCode": 0,
[2025-06-03 14:14:33]     "exeErrorDiag": "",
[2025-06-03 14:14:33]     "pilotErrorCode": 0,
[2025-06-03 14:14:33]     "pilotErrorDiag": "",
[2025-06-03 14:14:33]  *** Listing of results directory ***
[2025-06-03 14:14:33] total 391392
[2025-06-03 14:14:33] -rw-r--r--. 1 boinc boinc    495897 Jun  2 17:59 pilot3.tar.gz
[2025-06-03 14:14:33] -rwx------. 1 boinc boinc     37140 Jun  2 18:09 runpilot2-wrapper.sh
[2025-06-03 14:14:33] -rw-r--r--. 1 boinc boinc      5111 Jun  2 18:09 queuedata.json
[2025-06-03 14:14:33] -rw-r--r--. 1 boinc boinc       100 Jun  3 08:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 14:14:33] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 08:44 run_atlas
[2025-06-03 14:14:33] -rw-r--r--. 1 boinc boinc       105 Jun  3 08:44 job.xml
[2025-06-03 14:14:33] -rw-r--r--. 2 boinc boinc 213403175 Jun  3 08:44 EVNT.45006593._000129.pool.root.1
[2025-06-03 14:14:33] -rw-r--r--. 1 boinc boinc      6391 Jun  3 08:44 init_data.xml
[2025-06-03 14:14:33] -rw-r--r--. 2 boinc boinc     15093 Jun  3 08:44 start_atlas.sh
[2025-06-03 14:14:33] drwxrwx--x. 2 boinc boinc        68 Jun  3 08:44 shared
[2025-06-03 14:14:33] -rw-r--r--. 2 boinc boinc    508867 Jun  3 08:44 input.tar.gz
[2025-06-03 14:14:33] -rw-r--r--. 1 boinc boinc         0 Jun  3 08:44 boinc_lockfile
[2025-06-03 14:14:33] -rw-r--r--. 1 boinc boinc      2521 Jun  3 08:45 pandaJob.out
[2025-06-03 14:14:33] -rw-------. 1 boinc boinc    986901 Jun  3 08:48 agis_schedconf.cvmfs.json
[2025-06-03 14:14:33] drwx------. 4 boinc boinc      4096 Jun  3 08:48 pilot3
[2025-06-03 14:14:33] -rw-------. 1 boinc boinc 180384704 Jun  3 12:41 HITS.45006595._003213.pool.root.1
[2025-06-03 14:14:33] -rw-r--r--. 1 boinc boinc       531 Jun  3 12:41 boinc_task_state.xml
[2025-06-03 14:14:33] -rw-------. 1 boinc boinc      1020 Jun  3 12:42 memory_monitor_summary.json
[2025-06-03 14:14:33] -rw-------. 1 boinc boinc   1603667 Jun  3 12:42 agis_ddmendpoints.agis.ALL.json
[2025-06-03 14:14:33] -rw-------. 1 boinc boinc    382312 Jun  3 12:42 log.45006595._003213.job.log.tgz.1
[2025-06-03 14:14:33] -rw-------. 1 boinc boinc        95 Jun  3 12:44 pilot_heartbeat.json
[2025-06-03 14:14:33] -rw-------. 1 boinc boinc      7691 Jun  3 12:44 heartbeat.json
[2025-06-03 14:14:33] -rw-------. 1 boinc boinc      4539 Jun  3 12:44 pilotlog.txt
[2025-06-03 14:14:33] -rw-------. 1 boinc boinc   1203177 Jun  3 12:44 log.45006595._003213.job.log.1
[2025-06-03 14:14:33] -rw-------. 1 boinc boinc       357 Jun  3 12:44 output.list
[2025-06-03 14:14:33] -rw-r--r--. 1 boinc boinc       620 Jun  3 12:44 runtime_log
[2025-06-03 14:14:33] -rw-------. 1 boinc boinc   1607680 Jun  3 12:44 result.tar.gz
[2025-06-03 14:14:33] -rw-r--r--. 1 boinc boinc      8659 Jun  3 12:44 runtime_log.err
[2025-06-03 14:14:33] -rw-------. 1 boinc boinc       656 Jun  3 12:44 7R5NDmVuMg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmbnVKDmvwROxn.diag
[2025-06-03 14:14:33] -rw-r--r--. 1 boinc boinc      8192 Jun  3 14:14 boinc_mmap_file
[2025-06-03 14:14:33] -rw-r--r--. 1 boinc boinc        28 Jun  3 14:14 wrapper_checkpoint.txt
[2025-06-03 14:14:33] -rw-r--r--. 1 boinc boinc     20494 Jun  3 14:14 stderr.txt
[2025-06-03 14:14:33] HITS file was successfully produced:
[2025-06-03 14:14:33] -rw-------. 1 boinc boinc 180384704 Jun  3 12:41 shared/HITS.pool.root.1
[2025-06-03 14:14:33]  *** Contents of shared directory: ***
[2025-06-03 14:14:33] total 386652
[2025-06-03 14:14:33] -rw-r--r--. 2 boinc boinc 213403175 Jun  3 08:44 ATLAS.root_0
[2025-06-03 14:14:33] -rw-r--r--. 2 boinc boinc     15093 Jun  3 08:44 start_atlas.sh
[2025-06-03 14:14:33] -rw-r--r--. 2 boinc boinc    508867 Jun  3 08:44 input.tar.gz
[2025-06-03 14:14:33] -rw-------. 1 boinc boinc 180384704 Jun  3 12:41 HITS.pool.root.1
[2025-06-03 14:14:33] -rw-------. 1 boinc boinc   1607680 Jun  3 12:44 result.tar.gz
14:14:35 (29596): run_atlas exited; CPU time 49812.896056
14:14:35 (29596): called boinc_finish(0)

</stderr_txt>
]]>

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