Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:55:46 (26982): wrapper (7.7.26015): starting
06:55:46 (26982): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 06:55:46] Arguments: --nthreads 8
[2025-06-03 06:55:46] Threads: 8
[2025-06-03 06:55:46] Checking for CVMFS
[2025-06-03 06:55:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 06:55:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 06:55:47] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 06:55:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 06:55:48] 2.11.2.0 21130 31304 90300 146729 0 60 13187988 25165825 4635 130560 0 15506878 99.785 18360098 2031 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 06:55:48] CVMFS is ok
[2025-06-03 06:55:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 06:55:48] Checking for apptainer binary...
[2025-06-03 06:55:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 06:55:48] Running /usr/bin/apptainer --version
[2025-06-03 06:55:48] apptainer version 1.3.2-1.el7
[2025-06-03 06:55:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 06:56:11] cg-vwn411.simple-grid.lan
[2025-06-03 06:56:11] apptainer works
[2025-06-03 06:56:11] Set ATHENA_PROC_NUMBER=8
[2025-06-03 06:56:11] Set ATHENA_CORE_NUMBER=8
[2025-06-03 06:56:12] Starting ATLAS job with PandaID=6677394485
[2025-06-03 06:56:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 11:08:21]  *** The last 200 lines of the pilot log: ***
[2025-06-03 11:08:21] 2025-06-03 08:51:35,773 | INFO     | extracted standard info from prmon json
[2025-06-03 11:08:21] 2025-06-03 08:51:35,773 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 11:08:21] 2025-06-03 08:51:35,774 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 11:08:21] 2025-06-03 08:51:35,774 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 11:08:21] 2025-06-03 08:51:35,774 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 11:08:21] 2025-06-03 08:51:35,780 | INFO     | fitting pss+swap vs Time
[2025-06-03 11:08:21] 2025-06-03 08:51:35,781 | INFO     | sum of square deviations: 3301699115.0
[2025-06-03 11:08:21] 2025-06-03 08:51:35,784 | INFO     | sum of deviations: 29260664708.000015
[2025-06-03 11:08:21] 2025-06-03 08:51:35,784 | INFO     | mean x: 1748933994.5
[2025-06-03 11:08:21] 2025-06-03 08:51:35,785 | INFO     | mean y: 2479732.590909091
[2025-06-03 11:08:21] 2025-06-03 08:51:35,785 | INFO     | -- intersect: -15497106821.796751
[2025-06-03 11:08:21] 2025-06-03 08:51:35,785 | INFO     | intersect: -15497106821.796751
[2025-06-03 11:08:21] 2025-06-03 08:51:35,785 | INFO     | chi2: 7.661361909363633
[2025-06-03 11:08:21] 2025-06-03 08:51:35,786 | INFO     | sum of square deviations: 3081657780.0
[2025-06-03 11:08:21] 2025-06-03 08:51:35,787 | INFO     | sum of deviations: 43644007268.999985
[2025-06-03 11:08:21] 2025-06-03 08:51:35,787 | INFO     | mean x: 1748933842.0
[2025-06-03 11:08:21] 2025-06-03 08:51:35,788 | INFO     | mean y: 2489515.8139534886
[2025-06-03 11:08:21] 2025-06-03 08:51:35,788 | INFO     | -- intersect: -24766802457.043613
[2025-06-03 11:08:21] 2025-06-03 08:51:35,788 | INFO     | intersect: -24766802457.043613
[2025-06-03 11:08:21] 2025-06-03 08:51:35,788 | INFO     | chi2: 6.967676675339392
[2025-06-03 11:08:21] 2025-06-03 08:51:35,788 | INFO     | current chi2=6.967676675339392 (change=9.054333188155827 %)
[2025-06-03 11:08:21] 2025-06-03 08:51:35,788 | INFO     | right removable region: 214
[2025-06-03 11:08:21] 2025-06-03 08:51:35,789 | INFO     | sum of square deviations: 3081657780.0
[2025-06-03 11:08:21] 2025-06-03 08:51:35,790 | INFO     | sum of deviations: -49423681751.0
[2025-06-03 11:08:21] 2025-06-03 08:51:35,791 | INFO     | mean x: 1748934147.0
[2025-06-03 11:08:21] 2025-06-03 08:51:35,791 | INFO     | mean y: 2534231.9441860467
[2025-06-03 11:08:21] 2025-06-03 08:51:35,791 | INFO     | -- intersect: 28051970884.441227
[2025-06-03 11:08:21] 2025-06-03 08:51:35,791 | INFO     | intersect: 28051970884.441227
[2025-06-03 11:08:21] 2025-06-03 08:51:35,791 | INFO     | chi2: 2.5409239545611815
[2025-06-03 11:08:21] 2025-06-03 08:51:35,791 | INFO     | current chi2=2.5409239545611815 (change=66.83456564745111 %)
[2025-06-03 11:08:21] 2025-06-03 08:51:35,792 | INFO     | sum of square deviations: 2871616632.5
[2025-06-03 11:08:21] 2025-06-03 08:51:35,793 | INFO     | sum of deviations: -87924808574.5
[2025-06-03 11:08:21] 2025-06-03 08:51:35,794 | INFO     | mean x: 1748934299.5
[2025-06-03 11:08:21] 2025-06-03 08:51:35,794 | INFO     | mean y: 2561996.6523809526
[2025-06-03 11:08:21] 2025-06-03 08:51:35,794 | INFO     | -- intersect: 53552437614.63836
[2025-06-03 11:08:21] 2025-06-03 08:51:35,794 | INFO     | intersect: 53552437614.63836
[2025-06-03 11:08:21] 2025-06-03 08:51:35,794 | INFO     | chi2: 1.015224540118156
[2025-06-03 11:08:21] 2025-06-03 08:51:35,794 | INFO     | current chi2=1.015224540118156 (change=60.04506398958777 %)
[2025-06-03 11:08:21] 2025-06-03 08:51:35,795 | INFO     | sum of square deviations: 2671343110.0
[2025-06-03 11:08:21] 2025-06-03 08:51:35,797 | INFO     | sum of deviations: -86144305468.99998
[2025-06-03 11:08:21] 2025-06-03 08:51:35,797 | INFO     | mean x: 1748934452.0
[2025-06-03 11:08:21] 2025-06-03 08:51:35,797 | INFO     | mean y: 2560603.4585365853
[2025-06-03 11:08:21] 2025-06-03 08:51:35,797 | INFO     | -- intersect: 56401434680.83083
[2025-06-03 11:08:21] 2025-06-03 08:51:35,797 | INFO     | intersect: 56401434680.83083
[2025-06-03 11:08:21] 2025-06-03 08:51:35,798 | INFO     | chi2: 0.9952082571992951
[2025-06-03 11:08:21] 2025-06-03 08:51:35,798 | INFO     | current chi2=0.9952082571992951 (change=1.971611414804006 %)
[2025-06-03 11:08:21] 2025-06-03 08:51:35,798 | INFO     | left removable region: 30
[2025-06-03 11:08:21] 2025-06-03 08:51:35,798 | INFO     | sum of square deviations: 1931608310.0
[2025-06-03 11:08:21] 2025-06-03 08:51:35,800 | INFO     | sum of deviations: -54291982469.5
[2025-06-03 11:08:21] 2025-06-03 08:51:35,800 | INFO     | mean x: 1748934726.5
[2025-06-03 11:08:21] 2025-06-03 08:51:35,800 | INFO     | mean y: 2559628.570652174
[2025-06-03 11:08:21] 2025-06-03 08:51:35,800 | INFO     | -- intersect: 49160110370.02392
[2025-06-03 11:08:21] 2025-06-03 08:51:35,800 | INFO     | intersect: 49160110370.02392
[2025-06-03 11:08:21] 2025-06-03 08:51:35,800 | INFO     | chi2: 0.1980532761673146
[2025-06-03 11:08:21] 2025-06-03 08:51:35,801 | INFO     | -- intersect: 49160110370.02392
[2025-06-03 11:08:21] 2025-06-03 08:51:35,801 | INFO     | current memory leak: -28.11 B/s (using 184 data points, chi2=0.20)
[2025-06-03 11:08:21] 2025-06-03 08:51:35,802 | INFO     | ..............................
[2025-06-03 11:08:21] 2025-06-03 08:51:35,802 | INFO     | . Timing measurements:
[2025-06-03 11:08:21] 2025-06-03 08:51:35,802 | INFO     | . get job = 0 s
[2025-06-03 11:08:21] 2025-06-03 08:51:35,802 | INFO     | . initial setup = 14 s
[2025-06-03 11:08:21] 2025-06-03 08:51:35,803 | INFO     | . payload setup = 179 s
[2025-06-03 11:08:21] 2025-06-03 08:51:35,803 | INFO     | . stage-in = 0 s
[2025-06-03 11:08:21] 2025-06-03 08:51:35,803 | INFO     | . payload execution = 13512 s
[2025-06-03 11:08:21] 2025-06-03 08:51:35,803 | INFO     | . stage-out = 1 s
[2025-06-03 11:08:21] 2025-06-03 08:51:35,803 | INFO     | . log creation = 0 s
[2025-06-03 11:08:21] 2025-06-03 08:51:35,803 | INFO     | ..............................
[2025-06-03 11:08:21] 2025-06-03 08:51:36,322 | INFO     | 
[2025-06-03 11:08:21] 2025-06-03 08:51:36,323 | INFO     | job summary report
[2025-06-03 11:08:21] 2025-06-03 08:51:36,323 | INFO     | --------------------------------------------------
[2025-06-03 11:08:21] 2025-06-03 08:51:36,323 | INFO     | PanDA job id: 6677394485
[2025-06-03 11:08:21] 2025-06-03 08:51:36,323 | INFO     | task id: 45006595
[2025-06-03 11:08:21] 2025-06-03 08:51:36,323 | INFO     | errors: (none)
[2025-06-03 11:08:21] 2025-06-03 08:51:36,323 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 11:08:21] 2025-06-03 08:51:36,323 | INFO     | pilot state: finished 
[2025-06-03 11:08:21] 2025-06-03 08:51:36,323 | INFO     | transexitcode: 0
[2025-06-03 11:08:21] 2025-06-03 08:51:36,323 | INFO     | exeerrorcode: 0
[2025-06-03 11:08:21] 2025-06-03 08:51:36,323 | INFO     | exeerrordiag: 
[2025-06-03 11:08:21] 2025-06-03 08:51:36,324 | INFO     | exitcode: 0
[2025-06-03 11:08:21] 2025-06-03 08:51:36,324 | INFO     | exitmsg: OK
[2025-06-03 11:08:21] 2025-06-03 08:51:36,324 | INFO     | cpuconsumptiontime: 48801 s
[2025-06-03 11:08:21] 2025-06-03 08:51:36,324 | INFO     | nevents: 400
[2025-06-03 11:08:21] 2025-06-03 08:51:36,324 | INFO     | neventsw: 0
[2025-06-03 11:08:21] 2025-06-03 08:51:36,324 | INFO     | pid: 13128
[2025-06-03 11:08:21] 2025-06-03 08:51:36,324 | INFO     | pgrp: 13128
[2025-06-03 11:08:21] 2025-06-03 08:51:36,324 | INFO     | corecount: 8
[2025-06-03 11:08:21] 2025-06-03 08:51:36,324 | INFO     | event service: False
[2025-06-03 11:08:21] 2025-06-03 08:51:36,324 | INFO     | sizes: {0: 2404350, 1: 2405035, 2: 2405234, 13: 2405234, 24: 2405290, 34: 2405318, 45: 2405474, 56: 2405502, 67: 2405530, 77: 2405558, 88: 2405614, 99: 2406156, 13
[2025-06-03 11:08:21] 2025-06-03 08:51:36,324 | INFO     | --------------------------------------------------
[2025-06-03 11:08:21] 2025-06-03 08:51:36,324 | INFO     | 
[2025-06-03 11:08:21] 2025-06-03 08:51:36,325 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-06-03 11:08:21] 2025-06-03 08:51:36,406 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 11:08:21] 2025-06-03 08:51:36,406 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 11:08:21] 2025-06-03 08:51:36,406 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 11:08:21] 2025-06-03 08:51:36,406 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 11:08:21] 2025-06-03 08:51:36,406 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 11:08:21] 2025-06-03 08:51:36,406 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 11:08:21] 2025-06-03 08:51:36,406 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 11:08:21] 2025-06-03 08:51:36,407 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 11:08:21] 2025-06-03 08:51:36,407 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 11:08:21] 2025-06-03 08:51:36,407 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 11:08:21] 2025-06-03 08:51:36,407 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 11:08:21] 2025-06-03 08:51:36,407 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 11:08:21] 2025-06-03 08:51:36,407 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 11:08:21] 2025-06-03 08:51:36,407 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 11:08:21] 2025-06-03 08:51:36,407 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 11:08:21] 2025-06-03 08:51:36,407 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 11:08:21] 2025-06-03 08:51:36,407 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 11:08:21] 2025-06-03 08:51:36,407 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 11:08:21] 2025-06-03 08:51:36,407 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 11:08:21] 2025-06-03 08:51:36,408 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 11:08:21] 2025-06-03 08:51:36,408 | INFO     | job 6677394485 has completed (purged errors)
[2025-06-03 11:08:21] 2025-06-03 08:51:36,408 | INFO     | overall cleanup function is called
[2025-06-03 11:08:21] 2025-06-03 08:51:37,417 | INFO     | --- collectZombieJob: --- 10, [13128]
[2025-06-03 11:08:21] 2025-06-03 08:51:37,418 | INFO     | zombie collector waiting for pid 13128
[2025-06-03 11:08:21] 2025-06-03 08:51:37,418 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 11:08:21] 2025-06-03 08:51:37,418 | INFO     | collected zombie processes
[2025-06-03 11:08:21] 2025-06-03 08:51:37,418 | INFO     | will attempt to kill all subprocesses of pid=13128
[2025-06-03 11:08:21] 2025-06-03 08:51:37,534 | INFO     | process IDs to be killed: [13128] (in reverse order)
[2025-06-03 11:08:21] 2025-06-03 08:51:37,632 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 11:08:21] 2025-06-03 08:51:37,632 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 11:08:21] 2025-06-03 08:51:37,636 | INFO     | did not find any defunct processes belonging to 13128
[2025-06-03 11:08:21] 2025-06-03 08:51:37,639 | INFO     | did not find any defunct processes belonging to 13128
[2025-06-03 11:08:21] 2025-06-03 08:51:37,639 | INFO     | ready for new job
[2025-06-03 11:08:21] 2025-06-03 08:51:37,639 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 11:08:21] 2025-06-03 08:51:37,641 | INFO     | **************************************
[2025-06-03 11:08:21] 2025-06-03 08:51:37,641 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 11:08:21] 2025-06-03 08:51:37,641 | INFO     | **************************************
[2025-06-03 11:08:21] 2025-06-03 08:51:37,641 | INFO     | 
[2025-06-03 11:08:21] 2025-06-03 08:51:37,642 | INFO     | pilot is running in a VM
[2025-06-03 11:08:21] 2025-06-03 08:51:37,642 | INFO     | architecture information:
[2025-06-03 11:08:21] 2025-06-03 08:51:37,645 | INFO     | executing command: cat /etc/os-release
[2025-06-03 11:08:21] 2025-06-03 08:51:37,742 | INFO     | cat /etc/os-release:
[2025-06-03 11:08:21] NAME="CentOS Linux"
[2025-06-03 11:08:21] VERSION="7 (Core)"
[2025-06-03 11:08:21] ID="centos"
[2025-06-03 11:08:21] ID_LIKE="rhel fedora"
[2025-06-03 11:08:21] VERSION_ID="7"
[2025-06-03 11:08:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 11:08:21] ANSI_COLOR="0;31"
[2025-06-03 11:08:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 11:08:21] HOME_URL="https://www.centos.org/"
[2025-06-03 11:08:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 11:08:21] 
[2025-06-03 11:08:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 11:08:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 11:08:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 11:08:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 11:08:21] 
[2025-06-03 11:08:21] 2025-06-03 08:51:37,743 | INFO     | **************************************
[2025-06-03 11:08:21] 2025-06-03 08:51:38,246 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-06-03 11:08:21] 2025-06-03 08:51:38,343 | INFO     | sufficient remaining disk space (496885563392 B)
[2025-06-03 11:08:21] 2025-06-03 08:51:38,343 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 11:08:21] 2025-06-03 08:51:38,343 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 11:08:21] 2025-06-03 08:51:38,344 | INFO     | update_server=False
[2025-06-03 11:08:21] 2025-06-03 08:51:38,344 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 11:08:21] 2025-06-03 08:51:38,344 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 11:08:21] 2025-06-03 08:51:38,345 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 11:08:21] 2025-06-03 08:51:38,345 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 11:08:21] 2025-06-03 08:51:38,345 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 11:08:21] 2025-06-03 08:51:38,566 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 11:08:21] 2025-06-03 08:51:38,587 | INFO     | all payload control threads have been joined
[2025-06-03 11:08:21] 2025-06-03 08:51:38,675 | INFO     | all job control threads have been joined
[2025-06-03 11:08:21] 2025-06-03 08:51:38,689 | INFO     | all data control threads have been joined
[2025-06-03 11:08:21] 2025-06-03 08:51:39,064 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 11:08:21] 2025-06-03 08:51:39,065 | INFO     | aborting loop
[2025-06-03 11:08:21] 2025-06-03 08:51:39,350 | INFO     | [job] retrieve thread has finished
[2025-06-03 11:08:21] 2025-06-03 08:51:39,583 | INFO     | [payload] failed_post thread has finished
[2025-06-03 11:08:21] 2025-06-03 08:51:39,593 | INFO     | [payload] control thread has finished
[2025-06-03 11:08:21] 2025-06-03 08:51:39,681 | INFO     | [job] control thread has finished
[2025-06-03 11:08:21] 2025-06-03 08:51:39,682 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 11:08:21] 2025-06-03 08:51:39,691 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 11:08:21] 2025-06-03 08:51:39,695 | INFO     | [data] control thread has finished
[2025-06-03 11:08:21] 2025-06-03 08:51:39,861 | INFO     | [job] validate thread has finished
[2025-06-03 11:08:21] 2025-06-03 08:51:40,014 | INFO     | [data] copytool_in thread has finished
[2025-06-03 11:08:21] 2025-06-03 08:51:40,069 | INFO     | [job] job monitor thread has finished
[2025-06-03 11:08:21] 2025-06-03 08:51:40,404 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 11:08:21] 2025-06-03 08:51:40,573 | INFO     | [data] copytool_out thread has finished
[2025-06-03 11:08:21] 2025-06-03 08:51:40,726 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 11:08:21] 2025-06-03 08:51:40,804 | INFO     | [payload] validate_post thread has finished
[2025-06-03 11:08:21] 2025-06-03 08:51:40,954 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 11:08:21] 2025-06-03 08:51:41,387 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 11:08:21] 2025-06-03 08:51:41,959 | INFO     | [job] queue monitor thread has finished
[2025-06-03 11:08:21] 2025-06-03 08:51:45,396 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 11:08:21] 2025-06-03 08:51:46,864 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139748744152896)>', '<ExcThread(monitor, started 139748517254912)>']
[2025-06-03 11:08:21] 2025-06-03 08:51:47,398 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 11:08:21] 2025-06-03 08:51:47,399 | INFO     | [monitor] control thread has ended
[2025-06-03 11:08:21] 2025-06-03 08:51:51,890 | INFO     | all workflow threads have been joined
[2025-06-03 11:08:21] 2025-06-03 08:51:51,891 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 11:08:21] 2025-06-03 08:51:51,891 | INFO     | traces error code: 0
[2025-06-03 11:08:21] 2025-06-03 08:51:51,891 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 11:08:21] 2025-06-03 08:51:52,215 [wrapper] ==== pilot stdout END ====
[2025-06-03 11:08:21] 2025-06-03 08:51:52,294 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 11:08:21] 2025-06-03 08:51:52,362 [wrapper] pilotpid: 511
[2025-06-03 11:08:21] 2025-06-03 08:51:52,480 [wrapper] Pilot exit status: 0
[2025-06-03 11:08:21] 2025-06-03 08:51:52,788 [wrapper] pandaids: 6677394485
[2025-06-03 11:08:21] 2025-06-03 08:51:53,007 [wrapper] cleanup supervisor_pilot 30494 512
[2025-06-03 11:08:21] 2025-06-03 08:51:53,022 [wrapper] Test setup, not cleaning
[2025-06-03 11:08:21] 2025-06-03 08:51:53,047 [wrapper] apfmon messages muted
[2025-06-03 11:08:21] 2025-06-03 08:51:53,062 [wrapper] ==== wrapper stdout END ====
[2025-06-03 11:08:21] 2025-06-03 08:51:53,066 [wrapper] ==== wrapper stderr END ====
[2025-06-03 11:08:21]  *** Error codes and diagnostics ***
[2025-06-03 11:08:21]     "exeErrorCode": 0,
[2025-06-03 11:08:21]     "exeErrorDiag": "",
[2025-06-03 11:08:21]     "pilotErrorCode": 0,
[2025-06-03 11:08:21]     "pilotErrorDiag": "",
[2025-06-03 11:08:21]  *** Listing of results directory ***
[2025-06-03 11:08:21] total 386160
[2025-06-03 11:08:21] -rw-r--r--. 1 boinc boinc    495897 Jun  2 21:18 pilot3.tar.gz
[2025-06-03 11:08:21] -rw-r--r--. 1 boinc boinc      5111 Jun  2 21:20 queuedata.json
[2025-06-03 11:08:21] -rwx------. 1 boinc boinc     37140 Jun  2 21:21 runpilot2-wrapper.sh
[2025-06-03 11:08:21] -rw-r--r--. 1 boinc boinc       100 Jun  3 06:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 11:08:21] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 06:55 run_atlas
[2025-06-03 11:08:21] -rw-r--r--. 1 boinc boinc       105 Jun  3 06:55 job.xml
[2025-06-03 11:08:21] -rw-r--r--. 2 boinc boinc 213956436 Jun  3 06:55 EVNT.45006593._000370.pool.root.1
[2025-06-03 11:08:21] -rw-r--r--. 2 boinc boinc    508882 Jun  3 06:55 input.tar.gz
[2025-06-03 11:08:21] -rw-r--r--. 1 boinc boinc      6392 Jun  3 06:55 init_data.xml
[2025-06-03 11:08:21] -rw-r--r--. 2 boinc boinc     15093 Jun  3 06:55 start_atlas.sh
[2025-06-03 11:08:21] drwxrwx--x. 2 boinc boinc        68 Jun  3 06:55 shared
[2025-06-03 11:08:21] -rw-r--r--. 1 boinc boinc         0 Jun  3 06:55 boinc_lockfile
[2025-06-03 11:08:21] -rw-r--r--. 1 boinc boinc      2522 Jun  3 06:56 pandaJob.out
[2025-06-03 11:08:21] -rw-------. 1 boinc boinc    988073 Jun  3 06:59 agis_schedconf.cvmfs.json
[2025-06-03 11:08:21] drwx------. 4 boinc boinc      4096 Jun  3 07:00 pilot3
[2025-06-03 11:08:21] -rw-------. 1 boinc boinc 174497589 Jun  3 10:50 HITS.45006595._009247.pool.root.1
[2025-06-03 11:08:21] -rw-r--r--. 1 boinc boinc       531 Jun  3 10:51 boinc_task_state.xml
[2025-06-03 11:08:21] -rw-------. 1 boinc boinc        95 Jun  3 10:51 pilot_heartbeat.json
[2025-06-03 11:08:21] -rw-------. 1 boinc boinc      1019 Jun  3 10:51 memory_monitor_summary.json
[2025-06-03 11:08:21] -rw-------. 1 boinc boinc   1603667 Jun  3 10:51 agis_ddmendpoints.agis.ALL.json
[2025-06-03 11:08:21] -rw-------. 1 boinc boinc    392796 Jun  3 10:51 log.45006595._009247.job.log.tgz.1
[2025-06-03 11:08:21] -rw-------. 1 boinc boinc      7697 Jun  3 10:51 heartbeat.json
[2025-06-03 11:08:21] -rw-------. 1 boinc boinc      4539 Jun  3 10:51 pilotlog.txt
[2025-06-03 11:08:21] -rw-------. 1 boinc boinc   1183469 Jun  3 10:51 log.45006595._009247.job.log.1
[2025-06-03 11:08:21] -rw-------. 1 boinc boinc       357 Jun  3 10:51 output.list
[2025-06-03 11:08:21] -rw-r--r--. 1 boinc boinc       620 Jun  3 10:51 runtime_log
[2025-06-03 11:08:21] -rw-------. 1 boinc boinc   1597440 Jun  3 10:51 result.tar.gz
[2025-06-03 11:08:21] -rw-r--r--. 1 boinc boinc      8659 Jun  3 10:51 runtime_log.err
[2025-06-03 11:08:21] -rw-------. 1 boinc boinc       656 Jun  3 10:51 n8zLDm6tPg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmCIgKDmOM9nyn.diag
[2025-06-03 11:08:21] -rw-r--r--. 1 boinc boinc      8192 Jun  3 11:08 boinc_mmap_file
[2025-06-03 11:08:21] -rw-r--r--. 1 boinc boinc        28 Jun  3 11:08 wrapper_checkpoint.txt
[2025-06-03 11:08:21] -rw-r--r--. 1 boinc boinc     20504 Jun  3 11:08 stderr.txt
[2025-06-03 11:08:21] HITS file was successfully produced:
[2025-06-03 11:08:21] -rw-------. 1 boinc boinc 174497589 Jun  3 10:50 shared/HITS.pool.root.1
[2025-06-03 11:08:21]  *** Contents of shared directory: ***
[2025-06-03 11:08:21] total 381428
[2025-06-03 11:08:21] -rw-r--r--. 2 boinc boinc 213956436 Jun  3 06:55 ATLAS.root_0
[2025-06-03 11:08:21] -rw-r--r--. 2 boinc boinc    508882 Jun  3 06:55 input.tar.gz
[2025-06-03 11:08:21] -rw-r--r--. 2 boinc boinc     15093 Jun  3 06:55 start_atlas.sh
[2025-06-03 11:08:21] -rw-------. 1 boinc boinc 174497589 Jun  3 10:50 HITS.pool.root.1
[2025-06-03 11:08:21] -rw-------. 1 boinc boinc   1597440 Jun  3 10:51 result.tar.gz
11:08:23 (26982): run_atlas exited; CPU time 48972.463311
11:08:23 (26982): called boinc_finish(0)

</stderr_txt>
]]>

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