Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:36:38 (21170): wrapper (7.7.26015): starting
06:36:38 (21170): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 06:36:38] Arguments: --nthreads 8
[2025-06-03 06:36:38] Threads: 8
[2025-06-03 06:36:38] Checking for CVMFS
[2025-06-03 06:36:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 06:36:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 06:36:39] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 06:36:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 06:36:40] 2.11.2.0 24901 31284 91032 146729 3 59 23999899 25165824 4635 130560 0 16049663 99.794 18125487 2094 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 06:36:40] CVMFS is ok
[2025-06-03 06:36:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 06:36:40] Checking for apptainer binary...
[2025-06-03 06:36:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 06:36:40] Running /usr/bin/apptainer --version
[2025-06-03 06:36:40] apptainer version 1.3.2-1.el7
[2025-06-03 06:36:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 07:07:16] cg-vwn281.simple-grid.lan
[2025-06-03 07:07:16] apptainer works
[2025-06-03 07:07:16] Set ATHENA_PROC_NUMBER=8
[2025-06-03 07:07:16] Set ATHENA_CORE_NUMBER=8
[2025-06-03 07:07:16] Starting ATLAS job with PandaID=6677394019
[2025-06-03 07:07:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 11:13:43]  *** The last 200 lines of the pilot log: ***
[2025-06-03 11:13:43] 2025-06-03 09:02:49,885 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 11:13:43] 2025-06-03 09:02:49,885 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 11:13:43] 2025-06-03 09:02:49,886 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 11:13:43] 2025-06-03 09:02:49,886 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 11:13:43] 2025-06-03 09:02:49,891 | INFO     | fitting pss+swap vs Time
[2025-06-03 11:13:43] 2025-06-03 09:02:49,892 | INFO     | sum of square deviations: 3256879670.0
[2025-06-03 11:13:43] 2025-06-03 09:02:49,894 | INFO     | sum of deviations: 30468657285.000134
[2025-06-03 11:13:43] 2025-06-03 09:02:49,894 | INFO     | mean x: 1748934605.0
[2025-06-03 11:13:43] 2025-06-03 09:02:49,894 | INFO     | mean y: 2469204.721461187
[2025-06-03 11:13:43] 2025-06-03 09:02:49,894 | INFO     | -- intersect: -16359108284.453041
[2025-06-03 11:13:43] 2025-06-03 09:02:49,894 | INFO     | intersect: -16359108284.453041
[2025-06-03 11:13:43] 2025-06-03 09:02:49,894 | INFO     | chi2: 6.975447797548722
[2025-06-03 11:13:43] 2025-06-03 09:02:49,895 | INFO     | sum of square deviations: 3038856977.5
[2025-06-03 11:13:43] 2025-06-03 09:02:49,897 | INFO     | sum of deviations: 44691467000.00001
[2025-06-03 11:13:43] 2025-06-03 09:02:49,897 | INFO     | mean x: 1748934452.5
[2025-06-03 11:13:43] 2025-06-03 09:02:49,897 | INFO     | mean y: 2478967.2429906544
[2025-06-03 11:13:43] 2025-06-03 09:02:49,897 | INFO     | -- intersect: -25718523023.896893
[2025-06-03 11:13:43] 2025-06-03 09:02:49,897 | INFO     | intersect: -25718523023.896893
[2025-06-03 11:13:43] 2025-06-03 09:02:49,897 | INFO     | chi2: 6.275102734668248
[2025-06-03 11:13:43] 2025-06-03 09:02:49,897 | INFO     | current chi2=6.275102734668248 (change=10.04014485100993 %)
[2025-06-03 11:13:43] 2025-06-03 09:02:49,898 | INFO     | right removable region: 213
[2025-06-03 11:13:43] 2025-06-03 09:02:49,898 | INFO     | sum of square deviations: 3038856977.5
[2025-06-03 11:13:43] 2025-06-03 09:02:49,900 | INFO     | sum of deviations: -47291506874.5
[2025-06-03 11:13:43] 2025-06-03 09:02:49,900 | INFO     | mean x: 1748934757.5
[2025-06-03 11:13:43] 2025-06-03 09:02:49,900 | INFO     | mean y: 2523552.546728972
[2025-06-03 11:13:43] 2025-06-03 09:02:49,900 | INFO     | -- intersect: 27219915065.130093
[2025-06-03 11:13:43] 2025-06-03 09:02:49,900 | INFO     | intersect: 27219915065.130093
[2025-06-03 11:13:43] 2025-06-03 09:02:49,900 | INFO     | chi2: 1.9664158625602466
[2025-06-03 11:13:43] 2025-06-03 09:02:49,901 | INFO     | current chi2=1.9664158625602466 (change=71.8094677269139 %)
[2025-06-03 11:13:43] 2025-06-03 09:02:49,901 | INFO     | sum of square deviations: 2830787960.0
[2025-06-03 11:13:43] 2025-06-03 09:02:49,903 | INFO     | sum of deviations: -75644178195.0
[2025-06-03 11:13:43] 2025-06-03 09:02:49,903 | INFO     | mean x: 1748934910.0
[2025-06-03 11:13:43] 2025-06-03 09:02:49,903 | INFO     | mean y: 2544170.038277512
[2025-06-03 11:13:43] 2025-06-03 09:02:49,903 | INFO     | -- intersect: 46737497777.61837
[2025-06-03 11:13:43] 2025-06-03 09:02:49,903 | INFO     | intersect: 46737497777.61837
[2025-06-03 11:13:43] 2025-06-03 09:02:49,904 | INFO     | chi2: 1.0213059670943894
[2025-06-03 11:13:43] 2025-06-03 09:02:49,904 | INFO     | current chi2=1.0213059670943894 (change=48.06256466194984 %)
[2025-06-03 11:13:43] 2025-06-03 09:02:49,904 | INFO     | sum of square deviations: 2632440055.0
[2025-06-03 11:13:43] 2025-06-03 09:02:49,906 | INFO     | sum of deviations: -76295751494.5
[2025-06-03 11:13:43] 2025-06-03 09:02:49,906 | INFO     | mean x: 1748935062.5
[2025-06-03 11:13:43] 2025-06-03 09:02:49,906 | INFO     | mean y: 2544633.004901961
[2025-06-03 11:13:43] 2025-06-03 09:02:49,906 | INFO     | -- intersect: 50691757728.31234
[2025-06-03 11:13:43] 2025-06-03 09:02:49,906 | INFO     | intersect: 50691757728.31234
[2025-06-03 11:13:43] 2025-06-03 09:02:49,907 | INFO     | chi2: 0.9896982402364602
[2025-06-03 11:13:43] 2025-06-03 09:02:49,907 | INFO     | current chi2=0.9896982402364602 (change=3.094834249118602 %)
[2025-06-03 11:13:43] 2025-06-03 09:02:49,907 | INFO     | left removable region: 30
[2025-06-03 11:13:43] 2025-06-03 09:02:49,907 | INFO     | sum of square deviations: 1900284932.0
[2025-06-03 11:13:43] 2025-06-03 09:02:49,908 | INFO     | sum of deviations: -43236221719.99999
[2025-06-03 11:13:43] 2025-06-03 09:02:49,909 | INFO     | mean x: 1748935337.0
[2025-06-03 11:13:43] 2025-06-03 09:02:49,909 | INFO     | mean y: 2541880.0655737706
[2025-06-03 11:13:43] 2025-06-03 09:02:49,909 | INFO     | -- intersect: 39795182831.48839
[2025-06-03 11:13:43] 2025-06-03 09:02:49,909 | INFO     | intersect: 39795182831.48839
[2025-06-03 11:13:43] 2025-06-03 09:02:49,909 | INFO     | chi2: 0.1887613014428195
[2025-06-03 11:13:43] 2025-06-03 09:02:49,909 | INFO     | -- intersect: 39795182831.48839
[2025-06-03 11:13:43] 2025-06-03 09:02:49,910 | INFO     | current memory leak: -22.75 B/s (using 183 data points, chi2=0.19)
[2025-06-03 11:13:43] 2025-06-03 09:02:49,911 | INFO     | ..............................
[2025-06-03 11:13:43] 2025-06-03 09:02:49,911 | INFO     | . Timing measurements:
[2025-06-03 11:13:43] 2025-06-03 09:02:49,911 | INFO     | . get job = 0 s
[2025-06-03 11:13:43] 2025-06-03 09:02:49,911 | INFO     | . initial setup = 7 s
[2025-06-03 11:13:43] 2025-06-03 09:02:49,911 | INFO     | . payload setup = 184 s
[2025-06-03 11:13:43] 2025-06-03 09:02:49,911 | INFO     | . stage-in = 0 s
[2025-06-03 11:13:43] 2025-06-03 09:02:49,911 | INFO     | . payload execution = 13475 s
[2025-06-03 11:13:43] 2025-06-03 09:02:49,911 | INFO     | . stage-out = 1 s
[2025-06-03 11:13:43] 2025-06-03 09:02:49,911 | INFO     | . log creation = 0 s
[2025-06-03 11:13:43] 2025-06-03 09:02:49,912 | INFO     | ..............................
[2025-06-03 11:13:43] 2025-06-03 09:02:50,042 | INFO     | 
[2025-06-03 11:13:43] 2025-06-03 09:02:50,042 | INFO     | job summary report
[2025-06-03 11:13:43] 2025-06-03 09:02:50,042 | INFO     | --------------------------------------------------
[2025-06-03 11:13:43] 2025-06-03 09:02:50,042 | INFO     | PanDA job id: 6677394019
[2025-06-03 11:13:43] 2025-06-03 09:02:50,042 | INFO     | task id: 45006595
[2025-06-03 11:13:43] 2025-06-03 09:02:50,043 | INFO     | errors: (none)
[2025-06-03 11:13:43] 2025-06-03 09:02:50,043 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 11:13:43] 2025-06-03 09:02:50,043 | INFO     | pilot state: finished 
[2025-06-03 11:13:43] 2025-06-03 09:02:50,043 | INFO     | transexitcode: 0
[2025-06-03 11:13:43] 2025-06-03 09:02:50,043 | INFO     | exeerrorcode: 0
[2025-06-03 11:13:43] 2025-06-03 09:02:50,043 | INFO     | exeerrordiag: 
[2025-06-03 11:13:43] 2025-06-03 09:02:50,043 | INFO     | exitcode: 0
[2025-06-03 11:13:43] 2025-06-03 09:02:50,043 | INFO     | exitmsg: OK
[2025-06-03 11:13:43] 2025-06-03 09:02:50,043 | INFO     | cpuconsumptiontime: 50063 s
[2025-06-03 11:13:43] 2025-06-03 09:02:50,043 | INFO     | nevents: 400
[2025-06-03 11:13:43] 2025-06-03 09:02:50,043 | INFO     | neventsw: 0
[2025-06-03 11:13:43] 2025-06-03 09:02:50,043 | INFO     | pid: 21199
[2025-06-03 11:13:43] 2025-06-03 09:02:50,044 | INFO     | pgrp: 21199
[2025-06-03 11:13:43] 2025-06-03 09:02:50,044 | INFO     | corecount: 8
[2025-06-03 11:13:43] 2025-06-03 09:02:50,044 | INFO     | event service: False
[2025-06-03 11:13:43] 2025-06-03 09:02:50,044 | INFO     | sizes: {0: 2404950, 1: 2405205, 12: 2405205, 23: 2405233, 34: 2405261, 44: 2405289, 55: 2405445, 66: 2405473, 77: 2405501, 88: 2405763, 98: 2405791, 13664: 2435639
[2025-06-03 11:13:43] 2025-06-03 09:02:50,044 | INFO     | --------------------------------------------------
[2025-06-03 11:13:43] 2025-06-03 09:02:50,044 | INFO     | 
[2025-06-03 11:13:43] 2025-06-03 09:02:50,044 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-06-03 11:13:43] 2025-06-03 09:02:50,491 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 11:13:43] 2025-06-03 09:02:50,492 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 11:13:43] 2025-06-03 09:02:50,492 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 11:13:43] 2025-06-03 09:02:50,492 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 11:13:43] 2025-06-03 09:02:50,492 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 11:13:43] 2025-06-03 09:02:50,492 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 11:13:43] 2025-06-03 09:02:50,492 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 11:13:43] 2025-06-03 09:02:50,493 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 11:13:43] 2025-06-03 09:02:50,493 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 11:13:43] 2025-06-03 09:02:50,493 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 11:13:43] 2025-06-03 09:02:50,493 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 11:13:43] 2025-06-03 09:02:50,493 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 11:13:43] 2025-06-03 09:02:50,493 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 11:13:43] 2025-06-03 09:02:50,493 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 11:13:43] 2025-06-03 09:02:50,493 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 11:13:43] 2025-06-03 09:02:50,493 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 11:13:43] 2025-06-03 09:02:50,493 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 11:13:43] 2025-06-03 09:02:50,494 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 11:13:43] 2025-06-03 09:02:50,494 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 11:13:43] 2025-06-03 09:02:50,494 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 11:13:43] 2025-06-03 09:02:50,494 | INFO     | job 6677394019 has completed (purged errors)
[2025-06-03 11:13:43] 2025-06-03 09:02:50,494 | INFO     | overall cleanup function is called
[2025-06-03 11:13:43] 2025-06-03 09:02:51,503 | INFO     | --- collectZombieJob: --- 10, [21199]
[2025-06-03 11:13:43] 2025-06-03 09:02:51,503 | INFO     | zombie collector waiting for pid 21199
[2025-06-03 11:13:43] 2025-06-03 09:02:51,504 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 11:13:43] 2025-06-03 09:02:51,504 | INFO     | collected zombie processes
[2025-06-03 11:13:43] 2025-06-03 09:02:51,504 | INFO     | will attempt to kill all subprocesses of pid=21199
[2025-06-03 11:13:43] 2025-06-03 09:02:51,635 | INFO     | process IDs to be killed: [21199] (in reverse order)
[2025-06-03 11:13:43] 2025-06-03 09:02:52,436 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 11:13:43] 2025-06-03 09:02:52,436 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 11:13:43] 2025-06-03 09:02:52,440 | INFO     | did not find any defunct processes belonging to 21199
[2025-06-03 11:13:43] 2025-06-03 09:02:52,444 | INFO     | did not find any defunct processes belonging to 21199
[2025-06-03 11:13:43] 2025-06-03 09:02:52,444 | INFO     | ready for new job
[2025-06-03 11:13:43] 2025-06-03 09:02:52,444 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 11:13:43] 2025-06-03 09:02:52,447 | INFO     | **************************************
[2025-06-03 11:13:43] 2025-06-03 09:02:52,447 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 11:13:43] 2025-06-03 09:02:52,447 | INFO     | **************************************
[2025-06-03 11:13:43] 2025-06-03 09:02:52,447 | INFO     | 
[2025-06-03 11:13:43] 2025-06-03 09:02:52,448 | INFO     | pilot is running in a VM
[2025-06-03 11:13:43] 2025-06-03 09:02:52,448 | INFO     | architecture information:
[2025-06-03 11:13:43] 2025-06-03 09:02:52,448 | INFO     | executing command: cat /etc/os-release
[2025-06-03 11:13:43] 2025-06-03 09:02:52,681 | INFO     | cat /etc/os-release:
[2025-06-03 11:13:43] NAME="CentOS Linux"
[2025-06-03 11:13:43] VERSION="7 (Core)"
[2025-06-03 11:13:43] ID="centos"
[2025-06-03 11:13:43] ID_LIKE="rhel fedora"
[2025-06-03 11:13:43] VERSION_ID="7"
[2025-06-03 11:13:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 11:13:43] ANSI_COLOR="0;31"
[2025-06-03 11:13:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 11:13:43] HOME_URL="https://www.centos.org/"
[2025-06-03 11:13:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 11:13:43] 
[2025-06-03 11:13:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 11:13:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 11:13:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 11:13:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 11:13:43] 
[2025-06-03 11:13:43] 2025-06-03 09:02:52,681 | INFO     | **************************************
[2025-06-03 11:13:43] 2025-06-03 09:02:53,185 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-06-03 11:13:43] 2025-06-03 09:02:53,505 | INFO     | sufficient remaining disk space (496486055936 B)
[2025-06-03 11:13:43] 2025-06-03 09:02:53,505 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 11:13:43] 2025-06-03 09:02:53,506 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 11:13:43] 2025-06-03 09:02:53,506 | INFO     | update_server=False
[2025-06-03 11:13:43] 2025-06-03 09:02:53,513 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 11:13:43] 2025-06-03 09:02:53,514 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 11:13:43] 2025-06-03 09:02:53,514 | INFO     | aborting loop
[2025-06-03 11:13:43] 2025-06-03 09:02:53,521 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 11:13:43] 2025-06-03 09:02:53,521 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 11:13:43] 2025-06-03 09:02:53,522 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 11:13:43] 2025-06-03 09:02:53,522 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 11:13:43] 2025-06-03 09:02:53,687 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 11:13:43] 2025-06-03 09:02:54,057 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 11:13:43] 2025-06-03 09:02:54,341 | INFO     | all data control threads have been joined
[2025-06-03 11:13:43] 2025-06-03 09:02:54,519 | INFO     | [job] retrieve thread has finished
[2025-06-03 11:13:43] 2025-06-03 09:02:54,520 | INFO     | [job] job monitor thread has finished
[2025-06-03 11:13:43] 2025-06-03 09:02:54,647 | INFO     | [payload] failed_post thread has finished
[2025-06-03 11:13:43] 2025-06-03 09:02:54,708 | INFO     | all payload control threads have been joined
[2025-06-03 11:13:43] 2025-06-03 09:02:54,936 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 11:13:43] 2025-06-03 09:02:55,059 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 11:13:43] 2025-06-03 09:02:55,060 | INFO     | [job] validate thread has finished
[2025-06-03 11:13:43] 2025-06-03 09:02:55,221 | INFO     | all job control threads have been joined
[2025-06-03 11:13:43] 2025-06-03 09:02:55,347 | INFO     | [data] control thread has finished
[2025-06-03 11:13:43] 2025-06-03 09:02:55,355 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 11:13:43] 2025-06-03 09:02:55,672 | INFO     | [data] copytool_in thread has finished
[2025-06-03 11:13:43] 2025-06-03 09:02:55,688 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 11:13:43] 2025-06-03 09:02:55,698 | INFO     | [data] copytool_out thread has finished
[2025-06-03 11:13:43] 2025-06-03 09:02:55,714 | INFO     | [payload] control thread has finished
[2025-06-03 11:13:43] 2025-06-03 09:02:55,967 | INFO     | [payload] validate_post thread has finished
[2025-06-03 11:13:43] 2025-06-03 09:02:56,065 | INFO     | [job] queue monitor thread has finished
[2025-06-03 11:13:43] 2025-06-03 09:02:56,226 | INFO     | [job] control thread has finished
[2025-06-03 11:13:43] 2025-06-03 09:02:58,066 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 11:13:43] 2025-06-03 09:03:03,759 | INFO     | job.realtimelogging is not enabled
[2025-06-03 11:13:43] 2025-06-03 09:03:04,764 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 11:13:43] 2025-06-03 09:03:05,276 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139814765487936)>', '<ExcThread(monitor, started 139814204602112)>']
[2025-06-03 11:13:43] 2025-06-03 09:03:05,594 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 11:13:43] 2025-06-03 09:03:05,594 | INFO     | [monitor] control thread has ended
[2025-06-03 11:13:43] 2025-06-03 09:03:10,302 | INFO     | all workflow threads have been joined
[2025-06-03 11:13:43] 2025-06-03 09:03:10,302 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 11:13:43] 2025-06-03 09:03:10,303 | INFO     | traces error code: 0
[2025-06-03 11:13:43] 2025-06-03 09:03:10,303 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 11:13:43] 2025-06-03 09:03:10,715 [wrapper] ==== pilot stdout END ====
[2025-06-03 11:13:43] 2025-06-03 09:03:10,768 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 11:13:43] 2025-06-03 09:03:10,863 [wrapper] pilotpid: 10593
[2025-06-03 11:13:43] 2025-06-03 09:03:10,940 [wrapper] Pilot exit status: 0
[2025-06-03 11:13:43] 2025-06-03 09:03:11,434 [wrapper] pandaids: 6677394019
[2025-06-03 11:13:43] 2025-06-03 09:03:12,329 [wrapper] cleanup supervisor_pilot 31318 10594
[2025-06-03 11:13:43] 2025-06-03 09:03:12,426 [wrapper] Test setup, not cleaning
[2025-06-03 11:13:43] 2025-06-03 09:03:12,510 [wrapper] apfmon messages muted
[2025-06-03 11:13:43] 2025-06-03 09:03:12,570 [wrapper] ==== wrapper stdout END ====
[2025-06-03 11:13:43] 2025-06-03 09:03:12,614 [wrapper] ==== wrapper stderr END ====
[2025-06-03 11:13:43]  *** Error codes and diagnostics ***
[2025-06-03 11:13:43]     "exeErrorCode": 0,
[2025-06-03 11:13:43]     "exeErrorDiag": "",
[2025-06-03 11:13:43]     "pilotErrorCode": 0,
[2025-06-03 11:13:43]     "pilotErrorDiag": "",
[2025-06-03 11:13:43]  *** Listing of results directory ***
[2025-06-03 11:13:43] total 391432
[2025-06-03 11:13:43] -rw-r--r--. 1 boinc boinc    495897 Jun  2 21:02 pilot3.tar.gz
[2025-06-03 11:13:43] -rw-r--r--. 1 boinc boinc      5111 Jun  2 21:12 queuedata.json
[2025-06-03 11:13:43] -rwx------. 1 boinc boinc     37140 Jun  2 21:12 runpilot2-wrapper.sh
[2025-06-03 11:13:43] -rw-r--r--. 1 boinc boinc       100 Jun  3 06:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 11:13:43] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 06:36 run_atlas
[2025-06-03 11:13:43] -rw-r--r--. 1 boinc boinc       105 Jun  3 06:36 job.xml
[2025-06-03 11:13:43] -rw-r--r--. 2 boinc boinc 213652944 Jun  3 06:36 EVNT.45006593._000358.pool.root.1
[2025-06-03 11:13:43] -rw-r--r--. 1 boinc boinc      6390 Jun  3 06:36 init_data.xml
[2025-06-03 11:13:43] -rw-r--r--. 2 boinc boinc     15093 Jun  3 06:36 start_atlas.sh
[2025-06-03 11:13:43] drwxrwx--x. 2 boinc boinc        68 Jun  3 06:36 shared
[2025-06-03 11:13:43] -rw-r--r--. 2 boinc boinc    508874 Jun  3 06:36 input.tar.gz
[2025-06-03 11:13:43] -rw-r--r--. 1 boinc boinc         0 Jun  3 06:36 boinc_lockfile
[2025-06-03 11:13:43] -rw-r--r--. 1 boinc boinc      2521 Jun  3 07:07 pandaJob.out
[2025-06-03 11:13:43] -rw-------. 1 boinc boinc    988073 Jun  3 07:10 agis_schedconf.cvmfs.json
[2025-06-03 11:13:43] drwx------. 4 boinc boinc      4096 Jun  3 07:10 pilot3
[2025-06-03 11:13:43] -rw-------. 1 boinc boinc 180191896 Jun  3 11:00 HITS.45006595._008947.pool.root.1
[2025-06-03 11:13:43] -rw-r--r--. 1 boinc boinc       531 Jun  3 11:00 boinc_task_state.xml
[2025-06-03 11:13:43] -rw-------. 1 boinc boinc      1016 Jun  3 11:01 memory_monitor_summary.json
[2025-06-03 11:13:43] -rw-------. 1 boinc boinc   1603667 Jun  3 11:01 agis_ddmendpoints.agis.ALL.json
[2025-06-03 11:13:43] -rw-------. 1 boinc boinc    390979 Jun  3 11:01 log.45006595._008947.job.log.tgz.1
[2025-06-03 11:13:43] -rw-------. 1 boinc boinc        95 Jun  3 11:01 pilot_heartbeat.json
[2025-06-03 11:13:43] -rw-------. 1 boinc boinc      7689 Jun  3 11:02 heartbeat.json
[2025-06-03 11:13:43] -rw-------. 1 boinc boinc      4611 Jun  3 11:03 pilotlog.txt
[2025-06-03 11:13:43] -rw-------. 1 boinc boinc   1184532 Jun  3 11:03 log.45006595._008947.job.log.1
[2025-06-03 11:13:43] -rw-------. 1 boinc boinc       357 Jun  3 11:03 output.list
[2025-06-03 11:13:43] -rw-r--r--. 1 boinc boinc       620 Jun  3 11:03 runtime_log
[2025-06-03 11:13:43] -rw-------. 1 boinc boinc   1597440 Jun  3 11:03 result.tar.gz
[2025-06-03 11:13:43] -rw-r--r--. 1 boinc boinc      8659 Jun  3 11:03 runtime_log.err
[2025-06-03 11:13:43] -rw-------. 1 boinc boinc       656 Jun  3 11:03 erDLDm1kPg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfDgKDmWHKyLn.diag
[2025-06-03 11:13:43] -rw-r--r--. 1 boinc boinc      8192 Jun  3 11:13 boinc_mmap_file
[2025-06-03 11:13:43] -rw-r--r--. 1 boinc boinc        28 Jun  3 11:13 wrapper_checkpoint.txt
[2025-06-03 11:13:43] -rw-r--r--. 1 boinc boinc     20500 Jun  3 11:13 stderr.txt
[2025-06-03 11:13:43] HITS file was successfully produced:
[2025-06-03 11:13:43] -rw-------. 1 boinc boinc 180191896 Jun  3 11:00 shared/HITS.pool.root.1
[2025-06-03 11:13:43]  *** Contents of shared directory: ***
[2025-06-03 11:13:43] total 386696
[2025-06-03 11:13:43] -rw-r--r--. 2 boinc boinc 213652944 Jun  3 06:36 ATLAS.root_0
[2025-06-03 11:13:43] -rw-r--r--. 2 boinc boinc     15093 Jun  3 06:36 start_atlas.sh
[2025-06-03 11:13:43] -rw-r--r--. 2 boinc boinc    508874 Jun  3 06:36 input.tar.gz
[2025-06-03 11:13:43] -rw-------. 1 boinc boinc 180191896 Jun  3 11:00 HITS.pool.root.1
[2025-06-03 11:13:43] -rw-------. 1 boinc boinc   1597440 Jun  3 11:03 result.tar.gz
11:13:45 (21170): run_atlas exited; CPU time 50256.161990
11:13:45 (21170): called boinc_finish(0)

</stderr_txt>
]]>

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