Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:27:16 (17168): wrapper (7.7.26015): starting
07:27:16 (17168): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 07:27:16] Arguments: --nthreads 8
[2025-06-03 07:27:16] Threads: 8
[2025-06-03 07:27:16] Checking for CVMFS
[2025-06-03 07:27:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 07:27:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 07:27:17] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 07:27:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 07:27:18] 2.11.2.0 26253 31344 95720 146729 2 60 19139041 25165824 4635 130560 0 16206665 99.812 17148288 2170 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 07:27:18] CVMFS is ok
[2025-06-03 07:27:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 07:27:18] Checking for apptainer binary...
[2025-06-03 07:27:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 07:27:18] Running /usr/bin/apptainer --version
[2025-06-03 07:27:19] apptainer version 1.3.2-1.el7
[2025-06-03 07:27:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 07:27:26] cg-vwn377.simple-grid.lan
[2025-06-03 07:27:26] apptainer works
[2025-06-03 07:27:26] Set ATHENA_PROC_NUMBER=8
[2025-06-03 07:27:26] Set ATHENA_CORE_NUMBER=8
[2025-06-03 07:27:26] Starting ATLAS job with PandaID=6677379854
[2025-06-03 07:27:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 11:43:30]  *** The last 200 lines of the pilot log: ***
[2025-06-03 11:43:30] 2025-06-03 09:28:13,154 | INFO     | extracted standard info from prmon json
[2025-06-03 11:43:30] 2025-06-03 09:28:13,154 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 11:43:30] 2025-06-03 09:28:13,154 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 11:43:30] 2025-06-03 09:28:13,154 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 11:43:30] 2025-06-03 09:28:13,154 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 11:43:30] 2025-06-03 09:28:13,160 | INFO     | fitting pss+swap vs Time
[2025-06-03 11:43:30] 2025-06-03 09:28:13,160 | INFO     | sum of square deviations: 3485088600.0
[2025-06-03 11:43:30] 2025-06-03 09:28:13,162 | INFO     | sum of deviations: 55003827154.499985
[2025-06-03 11:43:30] 2025-06-03 09:28:13,162 | INFO     | mean x: 1748935966.5
[2025-06-03 11:43:30] 2025-06-03 09:28:13,163 | INFO     | mean y: 2440258.1026785714
[2025-06-03 11:43:30] 2025-06-03 09:28:13,176 | INFO     | -- intersect: -27600350559.225285
[2025-06-03 11:43:30] 2025-06-03 09:28:13,176 | INFO     | intersect: -27600350559.225285
[2025-06-03 11:43:30] 2025-06-03 09:28:13,177 | INFO     | chi2: 7.02103396540329
[2025-06-03 11:43:30] 2025-06-03 09:28:13,177 | INFO     | sum of square deviations: 3256879670.0
[2025-06-03 11:43:30] 2025-06-03 09:28:13,179 | INFO     | sum of deviations: 68570466244.00001
[2025-06-03 11:43:30] 2025-06-03 09:28:13,179 | INFO     | mean x: 1748935814.0
[2025-06-03 11:43:30] 2025-06-03 09:28:13,179 | INFO     | mean y: 2449145.593607306
[2025-06-03 11:43:30] 2025-06-03 09:28:13,179 | INFO     | -- intersect: -36819710819.80962
[2025-06-03 11:43:30] 2025-06-03 09:28:13,179 | INFO     | intersect: -36819710819.80962
[2025-06-03 11:43:30] 2025-06-03 09:28:13,180 | INFO     | chi2: 6.3165632631605595
[2025-06-03 11:43:30] 2025-06-03 09:28:13,180 | INFO     | current chi2=6.3165632631605595 (change=10.03371733727634 %)
[2025-06-03 11:43:30] 2025-06-03 09:28:13,180 | INFO     | right removable region: 218
[2025-06-03 11:43:30] 2025-06-03 09:28:13,180 | INFO     | sum of square deviations: 3256879670.0
[2025-06-03 11:43:30] 2025-06-03 09:28:13,182 | INFO     | sum of deviations: -21176877912.999992
[2025-06-03 11:43:30] 2025-06-03 09:28:13,182 | INFO     | mean x: 1748936119.0
[2025-06-03 11:43:30] 2025-06-03 09:28:13,182 | INFO     | mean y: 2491111.109589041
[2025-06-03 11:43:30] 2025-06-03 09:28:13,183 | INFO     | -- intersect: 11374420817.588129
[2025-06-03 11:43:30] 2025-06-03 09:28:13,183 | INFO     | intersect: 11374420817.588129
[2025-06-03 11:43:30] 2025-06-03 09:28:13,183 | INFO     | chi2: 2.2824812599402273
[2025-06-03 11:43:30] 2025-06-03 09:28:13,183 | INFO     | current chi2=2.2824812599402273 (change=67.49081016859714 %)
[2025-06-03 11:43:30] 2025-06-03 09:28:13,184 | INFO     | sum of square deviations: 3038856977.5
[2025-06-03 11:43:30] 2025-06-03 09:28:13,185 | INFO     | sum of deviations: -56771964584.0
[2025-06-03 11:43:30] 2025-06-03 09:28:13,186 | INFO     | mean x: 1748936271.5
[2025-06-03 11:43:30] 2025-06-03 09:28:13,186 | INFO     | mean y: 2515832.504672897
[2025-06-03 11:43:30] 2025-06-03 09:28:13,186 | INFO     | -- intersect: 32676165431.82051
[2025-06-03 11:43:30] 2025-06-03 09:28:13,186 | INFO     | intersect: 32676165431.82051
[2025-06-03 11:43:30] 2025-06-03 09:28:13,186 | INFO     | chi2: 0.9883000137832991
[2025-06-03 11:43:30] 2025-06-03 09:28:13,186 | INFO     | current chi2=0.9883000137832991 (change=56.70062965558892 %)
[2025-06-03 11:43:30] 2025-06-03 09:28:13,194 | INFO     | sum of square deviations: 2830787960.0
[2025-06-03 11:43:30] 2025-06-03 09:28:13,196 | INFO     | sum of deviations: -52657215562.0
[2025-06-03 11:43:30] 2025-06-03 09:28:13,196 | INFO     | mean x: 1748936424.0
[2025-06-03 11:43:30] 2025-06-03 09:28:13,196 | INFO     | mean y: 2512787.6842105263
[2025-06-03 11:43:30] 2025-06-03 09:28:13,196 | INFO     | -- intersect: 32535547258.69469
[2025-06-03 11:43:30] 2025-06-03 09:28:13,196 | INFO     | intersect: 32535547258.69469
[2025-06-03 11:43:30] 2025-06-03 09:28:13,197 | INFO     | chi2: 0.9781378121748355
[2025-06-03 11:43:30] 2025-06-03 09:28:13,197 | INFO     | current chi2=0.9781378121748355 (change=1.0282506796252886 %)
[2025-06-03 11:43:30] 2025-06-03 09:28:13,197 | INFO     | left removable region: 30
[2025-06-03 11:43:30] 2025-06-03 09:28:13,197 | INFO     | sum of square deviations: 2060343747.0
[2025-06-03 11:43:30] 2025-06-03 09:28:13,199 | INFO     | sum of deviations: -16673869228.499998
[2025-06-03 11:43:30] 2025-06-03 09:28:13,199 | INFO     | mean x: 1748936698.5
[2025-06-03 11:43:30] 2025-06-03 09:28:13,199 | INFO     | mean y: 2506370.888297872
[2025-06-03 11:43:30] 2025-06-03 09:28:13,199 | INFO     | -- intersect: 14156232826.570614
[2025-06-03 11:43:30] 2025-06-03 09:28:13,199 | INFO     | intersect: 14156232826.570614
[2025-06-03 11:43:30] 2025-06-03 09:28:13,200 | INFO     | chi2: 0.12455411903598886
[2025-06-03 11:43:30] 2025-06-03 09:28:13,200 | INFO     | -- intersect: 14156232826.570614
[2025-06-03 11:43:30] 2025-06-03 09:28:13,200 | INFO     | current memory leak: -8.09 B/s (using 188 data points, chi2=0.12)
[2025-06-03 11:43:30] 2025-06-03 09:28:13,201 | INFO     | ..............................
[2025-06-03 11:43:30] 2025-06-03 09:28:13,201 | INFO     | . Timing measurements:
[2025-06-03 11:43:30] 2025-06-03 09:28:13,201 | INFO     | . get job = 0 s
[2025-06-03 11:43:30] 2025-06-03 09:28:13,201 | INFO     | . initial setup = 8 s
[2025-06-03 11:43:30] 2025-06-03 09:28:13,201 | INFO     | . payload setup = 190 s
[2025-06-03 11:43:30] 2025-06-03 09:28:13,201 | INFO     | . stage-in = 0 s
[2025-06-03 11:43:30] 2025-06-03 09:28:13,201 | INFO     | . payload execution = 13783 s
[2025-06-03 11:43:30] 2025-06-03 09:28:13,201 | INFO     | . stage-out = 3 s
[2025-06-03 11:43:30] 2025-06-03 09:28:13,201 | INFO     | . log creation = 0 s
[2025-06-03 11:43:30] 2025-06-03 09:28:13,201 | INFO     | ..............................
[2025-06-03 11:43:30] 2025-06-03 09:28:13,334 | INFO     | 
[2025-06-03 11:43:30] 2025-06-03 09:28:13,334 | INFO     | job summary report
[2025-06-03 11:43:30] 2025-06-03 09:28:13,334 | INFO     | --------------------------------------------------
[2025-06-03 11:43:30] 2025-06-03 09:28:13,334 | INFO     | PanDA job id: 6677379854
[2025-06-03 11:43:30] 2025-06-03 09:28:13,334 | INFO     | task id: 45006595
[2025-06-03 11:43:30] 2025-06-03 09:28:13,335 | INFO     | errors: (none)
[2025-06-03 11:43:30] 2025-06-03 09:28:13,335 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 11:43:30] 2025-06-03 09:28:13,335 | INFO     | pilot state: finished 
[2025-06-03 11:43:30] 2025-06-03 09:28:13,335 | INFO     | transexitcode: 0
[2025-06-03 11:43:30] 2025-06-03 09:28:13,335 | INFO     | exeerrorcode: 0
[2025-06-03 11:43:30] 2025-06-03 09:28:13,335 | INFO     | exeerrordiag: 
[2025-06-03 11:43:30] 2025-06-03 09:28:13,335 | INFO     | exitcode: 0
[2025-06-03 11:43:30] 2025-06-03 09:28:13,335 | INFO     | exitmsg: OK
[2025-06-03 11:43:30] 2025-06-03 09:28:13,335 | INFO     | cpuconsumptiontime: 49977 s
[2025-06-03 11:43:30] 2025-06-03 09:28:13,335 | INFO     | nevents: 400
[2025-06-03 11:43:30] 2025-06-03 09:28:13,335 | INFO     | neventsw: 0
[2025-06-03 11:43:30] 2025-06-03 09:28:13,336 | INFO     | pid: 31447
[2025-06-03 11:43:30] 2025-06-03 09:28:13,336 | INFO     | pgrp: 31447
[2025-06-03 11:43:30] 2025-06-03 09:28:13,336 | INFO     | corecount: 8
[2025-06-03 11:43:30] 2025-06-03 09:28:13,336 | INFO     | event service: False
[2025-06-03 11:43:30] 2025-06-03 09:28:13,336 | INFO     | sizes: {0: 2404949, 1: 2405204, 12: 2405204, 23: 2405232, 34: 2405260, 44: 2405288, 55: 2405444, 66: 2405472, 77: 2405500, 86: 2405762, 87: 2405790, 13977: 2435722
[2025-06-03 11:43:30] 2025-06-03 09:28:13,336 | INFO     | --------------------------------------------------
[2025-06-03 11:43:30] 2025-06-03 09:28:13,336 | INFO     | 
[2025-06-03 11:43:30] 2025-06-03 09:28:13,336 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-03 11:43:30] 2025-06-03 09:28:13,591 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 11:43:30] 2025-06-03 09:28:13,591 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 11:43:30] 2025-06-03 09:28:13,591 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 11:43:30] 2025-06-03 09:28:13,591 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 11:43:30] 2025-06-03 09:28:13,591 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 11:43:30] 2025-06-03 09:28:13,592 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 11:43:30] 2025-06-03 09:28:13,592 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 11:43:30] 2025-06-03 09:28:13,592 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 11:43:30] 2025-06-03 09:28:13,592 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 11:43:30] 2025-06-03 09:28:13,592 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 11:43:30] 2025-06-03 09:28:13,592 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 11:43:30] 2025-06-03 09:28:13,592 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 11:43:30] 2025-06-03 09:28:13,592 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 11:43:30] 2025-06-03 09:28:13,593 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 11:43:30] 2025-06-03 09:28:13,593 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 11:43:30] 2025-06-03 09:28:13,593 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 11:43:30] 2025-06-03 09:28:13,593 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 11:43:30] 2025-06-03 09:28:13,593 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 11:43:30] 2025-06-03 09:28:13,593 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 11:43:30] 2025-06-03 09:28:13,593 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 11:43:30] 2025-06-03 09:28:13,594 | INFO     | job 6677379854 has completed (purged errors)
[2025-06-03 11:43:30] 2025-06-03 09:28:13,594 | INFO     | overall cleanup function is called
[2025-06-03 11:43:30] 2025-06-03 09:28:14,603 | INFO     | --- collectZombieJob: --- 10, [31447]
[2025-06-03 11:43:30] 2025-06-03 09:28:14,603 | INFO     | zombie collector waiting for pid 31447
[2025-06-03 11:43:30] 2025-06-03 09:28:14,604 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 11:43:30] 2025-06-03 09:28:14,604 | INFO     | collected zombie processes
[2025-06-03 11:43:30] 2025-06-03 09:28:14,604 | INFO     | will attempt to kill all subprocesses of pid=31447
[2025-06-03 11:43:30] 2025-06-03 09:28:14,741 | INFO     | process IDs to be killed: [31447] (in reverse order)
[2025-06-03 11:43:30] 2025-06-03 09:28:14,803 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 11:43:30] 2025-06-03 09:28:14,804 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 11:43:30] 2025-06-03 09:28:14,807 | INFO     | did not find any defunct processes belonging to 31447
[2025-06-03 11:43:30] 2025-06-03 09:28:14,810 | INFO     | did not find any defunct processes belonging to 31447
[2025-06-03 11:43:30] 2025-06-03 09:28:14,810 | INFO     | ready for new job
[2025-06-03 11:43:30] 2025-06-03 09:28:14,810 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 11:43:30] 2025-06-03 09:28:14,812 | INFO     | **************************************
[2025-06-03 11:43:30] 2025-06-03 09:28:14,813 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 11:43:30] 2025-06-03 09:28:14,813 | INFO     | **************************************
[2025-06-03 11:43:30] 2025-06-03 09:28:14,813 | INFO     | 
[2025-06-03 11:43:30] 2025-06-03 09:28:14,813 | INFO     | pilot is running in a VM
[2025-06-03 11:43:30] 2025-06-03 09:28:14,814 | INFO     | architecture information:
[2025-06-03 11:43:30] 2025-06-03 09:28:14,814 | INFO     | executing command: cat /etc/os-release
[2025-06-03 11:43:30] 2025-06-03 09:28:14,858 | INFO     | cat /etc/os-release:
[2025-06-03 11:43:30] NAME="CentOS Linux"
[2025-06-03 11:43:30] VERSION="7 (Core)"
[2025-06-03 11:43:30] ID="centos"
[2025-06-03 11:43:30] ID_LIKE="rhel fedora"
[2025-06-03 11:43:30] VERSION_ID="7"
[2025-06-03 11:43:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 11:43:30] ANSI_COLOR="0;31"
[2025-06-03 11:43:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 11:43:30] HOME_URL="https://www.centos.org/"
[2025-06-03 11:43:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 11:43:30] 
[2025-06-03 11:43:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 11:43:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 11:43:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 11:43:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 11:43:30] 
[2025-06-03 11:43:30] 2025-06-03 09:28:14,859 | INFO     | **************************************
[2025-06-03 11:43:30] 2025-06-03 09:28:15,362 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-03 11:43:30] 2025-06-03 09:28:15,640 | INFO     | sufficient remaining disk space (496757637120 B)
[2025-06-03 11:43:30] 2025-06-03 09:28:15,640 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 11:43:30] 2025-06-03 09:28:15,640 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 11:43:30] 2025-06-03 09:28:15,641 | INFO     | update_server=False
[2025-06-03 11:43:30] 2025-06-03 09:28:15,641 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 11:43:30] 2025-06-03 09:28:15,642 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 11:43:30] 2025-06-03 09:28:15,642 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 11:43:30] 2025-06-03 09:28:15,643 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 11:43:30] 2025-06-03 09:28:15,643 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 11:43:30] 2025-06-03 09:28:15,677 | INFO     | all payload control threads have been joined
[2025-06-03 11:43:30] 2025-06-03 09:28:15,697 | INFO     | all data control threads have been joined
[2025-06-03 11:43:30] 2025-06-03 09:28:15,714 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 11:43:30] 2025-06-03 09:28:15,715 | INFO     | aborting loop
[2025-06-03 11:43:30] 2025-06-03 09:28:16,048 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 11:43:30] 2025-06-03 09:28:16,173 | INFO     | all job control threads have been joined
[2025-06-03 11:43:30] 2025-06-03 09:28:16,646 | INFO     | [job] retrieve thread has finished
[2025-06-03 11:43:30] 2025-06-03 09:28:16,684 | INFO     | [payload] control thread has finished
[2025-06-03 11:43:30] 2025-06-03 09:28:16,704 | INFO     | [data] control thread has finished
[2025-06-03 11:43:30] 2025-06-03 09:28:16,719 | INFO     | [job] job monitor thread has finished
[2025-06-03 11:43:30] 2025-06-03 09:28:16,804 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 11:43:30] 2025-06-03 09:28:17,155 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 11:43:30] 2025-06-03 09:28:17,179 | INFO     | [job] control thread has finished
[2025-06-03 11:43:30] 2025-06-03 09:28:17,463 | INFO     | [payload] failed_post thread has finished
[2025-06-03 11:43:30] 2025-06-03 09:28:17,474 | INFO     | [data] copytool_in thread has finished
[2025-06-03 11:43:30] 2025-06-03 09:28:17,718 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 11:43:30] 2025-06-03 09:28:17,775 | INFO     | [job] validate thread has finished
[2025-06-03 11:43:30] 2025-06-03 09:28:17,804 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 11:43:30] 2025-06-03 09:28:18,055 | INFO     | [data] copytool_out thread has finished
[2025-06-03 11:43:30] 2025-06-03 09:28:18,133 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 11:43:30] 2025-06-03 09:28:18,139 | INFO     | [payload] validate_post thread has finished
[2025-06-03 11:43:30] 2025-06-03 09:28:18,352 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 11:43:30] 2025-06-03 09:28:19,358 | INFO     | [job] queue monitor thread has finished
[2025-06-03 11:43:30] 2025-06-03 09:28:21,164 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 11:43:30] 2025-06-03 09:28:22,173 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140388309116736)>', '<ExcThread(monitor, started 140388002141952)>']
[2025-06-03 11:43:30] 2025-06-03 09:28:22,682 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 11:43:30] 2025-06-03 09:28:22,682 | INFO     | [monitor] control thread has ended
[2025-06-03 11:43:30] 2025-06-03 09:28:27,199 | INFO     | all workflow threads have been joined
[2025-06-03 11:43:30] 2025-06-03 09:28:27,199 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 11:43:30] 2025-06-03 09:28:27,200 | INFO     | traces error code: 0
[2025-06-03 11:43:30] 2025-06-03 09:28:27,200 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 11:43:30] 2025-06-03 09:28:27,484 [wrapper] ==== pilot stdout END ====
[2025-06-03 11:43:30] 2025-06-03 09:28:27,513 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 11:43:30] 2025-06-03 09:28:27,542 [wrapper] pilotpid: 22884
[2025-06-03 11:43:30] 2025-06-03 09:28:27,639 [wrapper] Pilot exit status: 0
[2025-06-03 11:43:30] 2025-06-03 09:28:28,099 [wrapper] pandaids: 6677379854
[2025-06-03 11:43:30] 2025-06-03 09:28:29,083 [wrapper] cleanup supervisor_pilot 28488 22885
[2025-06-03 11:43:30] 2025-06-03 09:28:29,171 [wrapper] Test setup, not cleaning
[2025-06-03 11:43:30] 2025-06-03 09:28:29,260 [wrapper] apfmon messages muted
[2025-06-03 11:43:30] 2025-06-03 09:28:29,368 [wrapper] ==== wrapper stdout END ====
[2025-06-03 11:43:30] 2025-06-03 09:28:29,481 [wrapper] ==== wrapper stderr END ====
[2025-06-03 11:43:30]  *** Error codes and diagnostics ***
[2025-06-03 11:43:30]     "exeErrorCode": 0,
[2025-06-03 11:43:30]     "exeErrorDiag": "",
[2025-06-03 11:43:30]     "pilotErrorCode": 0,
[2025-06-03 11:43:30]     "pilotErrorDiag": "",
[2025-06-03 11:43:30]  *** Listing of results directory ***
[2025-06-03 11:43:30] total 393380
[2025-06-03 11:43:30] -rw-r--r--. 1 boinc boinc    495897 Jun  2 17:48 pilot3.tar.gz
[2025-06-03 11:43:30] -rw-r--r--. 1 boinc boinc      5111 Jun  2 17:49 queuedata.json
[2025-06-03 11:43:30] -rwx------. 1 boinc boinc     37140 Jun  2 17:50 runpilot2-wrapper.sh
[2025-06-03 11:43:30] -rw-r--r--. 1 boinc boinc       100 Jun  3 07:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 11:43:30] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 07:27 run_atlas
[2025-06-03 11:43:30] -rw-r--r--. 1 boinc boinc       105 Jun  3 07:27 job.xml
[2025-06-03 11:43:30] -rw-r--r--. 1 boinc boinc      6391 Jun  3 07:27 init_data.xml
[2025-06-03 11:43:30] -rw-r--r--. 2 boinc boinc 215637426 Jun  3 07:27 EVNT.45006593._000077.pool.root.1
[2025-06-03 11:43:30] -rw-r--r--. 2 boinc boinc     15093 Jun  3 07:27 start_atlas.sh
[2025-06-03 11:43:30] drwxrwx--x. 2 boinc boinc        68 Jun  3 07:27 shared
[2025-06-03 11:43:30] -rw-r--r--. 2 boinc boinc    508876 Jun  3 07:27 input.tar.gz
[2025-06-03 11:43:30] -rw-r--r--. 1 boinc boinc         0 Jun  3 07:27 boinc_lockfile
[2025-06-03 11:43:30] -rw-r--r--. 1 boinc boinc      2521 Jun  3 07:27 pandaJob.out
[2025-06-03 11:43:30] -rw-------. 1 boinc boinc    988073 Jun  3 07:30 agis_schedconf.cvmfs.json
[2025-06-03 11:43:30] drwx------. 4 boinc boinc      4096 Jun  3 07:30 pilot3
[2025-06-03 11:43:30] -rw-------. 1 boinc boinc 180163789 Jun  3 11:25 HITS.45006595._001912.pool.root.1
[2025-06-03 11:43:30] -rw-r--r--. 1 boinc boinc       531 Jun  3 11:25 boinc_task_state.xml
[2025-06-03 11:43:30] -rw-------. 1 boinc boinc      1019 Jun  3 11:26 memory_monitor_summary.json
[2025-06-03 11:43:30] -rw-------. 1 boinc boinc   1603667 Jun  3 11:26 agis_ddmendpoints.agis.ALL.json
[2025-06-03 11:43:30] -rw-------. 1 boinc boinc    382951 Jun  3 11:26 log.45006595._001912.job.log.tgz.1
[2025-06-03 11:43:30] -rw-------. 1 boinc boinc        95 Jun  3 11:28 pilot_heartbeat.json
[2025-06-03 11:43:30] -rw-------. 1 boinc boinc      7688 Jun  3 11:28 heartbeat.json
[2025-06-03 11:43:30] -rw-------. 1 boinc boinc      4539 Jun  3 11:28 pilotlog.txt
[2025-06-03 11:43:30] -rw-------. 1 boinc boinc   1215399 Jun  3 11:28 log.45006595._001912.job.log.1
[2025-06-03 11:43:30] -rw-------. 1 boinc boinc       357 Jun  3 11:28 output.list
[2025-06-03 11:43:30] -rw-r--r--. 1 boinc boinc       620 Jun  3 11:28 runtime_log
[2025-06-03 11:43:30] -rw-------. 1 boinc boinc   1617920 Jun  3 11:28 result.tar.gz
[2025-06-03 11:43:30] -rw-r--r--. 1 boinc boinc      8659 Jun  3 11:28 runtime_log.err
[2025-06-03 11:43:30] -rw-------. 1 boinc boinc       656 Jun  3 11:28 7CuMDmsbMg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmG7eKDmgaP6am.diag
[2025-06-03 11:43:30] -rw-r--r--. 1 boinc boinc      8192 Jun  3 11:43 boinc_mmap_file
[2025-06-03 11:43:30] -rw-r--r--. 1 boinc boinc        28 Jun  3 11:43 wrapper_checkpoint.txt
[2025-06-03 11:43:30] -rw-r--r--. 1 boinc boinc     20515 Jun  3 11:43 stderr.txt
[2025-06-03 11:43:31] HITS file was successfully produced:
[2025-06-03 11:43:31] -rw-------. 1 boinc boinc 180163789 Jun  3 11:25 shared/HITS.pool.root.1
[2025-06-03 11:43:31]  *** Contents of shared directory: ***
[2025-06-03 11:43:31] total 388624
[2025-06-03 11:43:31] -rw-r--r--. 2 boinc boinc 215637426 Jun  3 07:27 ATLAS.root_0
[2025-06-03 11:43:31] -rw-r--r--. 2 boinc boinc     15093 Jun  3 07:27 start_atlas.sh
[2025-06-03 11:43:31] -rw-r--r--. 2 boinc boinc    508876 Jun  3 07:27 input.tar.gz
[2025-06-03 11:43:31] -rw-------. 1 boinc boinc 180163789 Jun  3 11:25 HITS.pool.root.1
[2025-06-03 11:43:31] -rw-------. 1 boinc boinc   1617920 Jun  3 11:28 result.tar.gz
11:43:32 (17168): run_atlas exited; CPU time 50170.179734
11:43:32 (17168): called boinc_finish(0)

</stderr_txt>
]]>

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