Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:38:25 (8414): wrapper (7.7.26015): starting
13:38:25 (8414): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 13:38:25] Arguments: --nthreads 8
[2025-06-03 13:38:25] Threads: 8
[2025-06-03 13:38:25] Checking for CVMFS
[2025-06-03 13:38:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 13:38:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 13:38:26] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 13:38:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 13:38:27] 2.11.2.0 6428 31706 95132 146741 1 114 13806852 25165824 3335 130560 0 16875647 99.866 17514380 2050 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 13:38:27] CVMFS is ok
[2025-06-03 13:38:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 13:38:27] Checking for apptainer binary...
[2025-06-03 13:38:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 13:38:27] Running /usr/bin/apptainer --version
[2025-06-03 13:38:27] apptainer version 1.3.2-1.el7
[2025-06-03 13:38:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 13:38:28] cg-vwn335.simple-grid.lan
[2025-06-03 13:38:28] apptainer works
[2025-06-03 13:38:28] Set ATHENA_PROC_NUMBER=8
[2025-06-03 13:38:28] Set ATHENA_CORE_NUMBER=8
[2025-06-03 13:38:28] Starting ATLAS job with PandaID=6677393903
[2025-06-03 13:38:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 17:30:54]  *** The last 200 lines of the pilot log: ***
[2025-06-03 17:30:54] 2025-06-03 15:30:37,699 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6677393903/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 17:30:54] 2025-06-03 15:30:37,700 | INFO     | extracted standard info from prmon json
[2025-06-03 17:30:54] 2025-06-03 15:30:37,700 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 17:30:54] 2025-06-03 15:30:37,700 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 17:30:54] 2025-06-03 15:30:37,700 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 17:30:54] 2025-06-03 15:30:37,700 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 17:30:54] 2025-06-03 15:30:37,706 | INFO     | fitting pss+swap vs Time
[2025-06-03 17:30:54] 2025-06-03 15:30:37,707 | INFO     | sum of square deviations: 3627000098.0
[2025-06-03 17:30:54] 2025-06-03 15:30:37,709 | INFO     | sum of deviations: -63836860022.000015
[2025-06-03 17:30:54] 2025-06-03 15:30:37,709 | INFO     | mean x: 1748957701.0
[2025-06-03 17:30:54] 2025-06-03 15:30:37,709 | INFO     | mean y: 2581364.59030837
[2025-06-03 17:30:54] 2025-06-03 15:30:37,709 | INFO     | -- intersect: 30785036541.44594
[2025-06-03 17:30:54] 2025-06-03 15:30:37,710 | INFO     | intersect: 30785036541.44594
[2025-06-03 17:30:54] 2025-06-03 15:30:37,710 | INFO     | chi2: 2.9013225092670516
[2025-06-03 17:30:54] 2025-06-03 15:30:37,711 | INFO     | sum of square deviations: 3392567795.5
[2025-06-03 17:30:54] 2025-06-03 15:30:37,712 | INFO     | sum of deviations: -45509975522.5
[2025-06-03 17:30:54] 2025-06-03 15:30:37,713 | INFO     | mean x: 1748957548.5
[2025-06-03 17:30:54] 2025-06-03 15:30:37,713 | INFO     | mean y: 2593111.9324324327
[2025-06-03 17:30:54] 2025-06-03 15:30:37,713 | INFO     | -- intersect: 23464177380.846302
[2025-06-03 17:30:54] 2025-06-03 15:30:37,713 | INFO     | intersect: 23464177380.846302
[2025-06-03 17:30:54] 2025-06-03 15:30:37,713 | INFO     | chi2: 2.1326075957847266
[2025-06-03 17:30:54] 2025-06-03 15:30:37,713 | INFO     | current chi2=2.1326075957847266 (change=26.4953279418951 %)
[2025-06-03 17:30:54] 2025-06-03 15:30:37,714 | INFO     | sum of square deviations: 3168461268.0
[2025-06-03 17:30:54] 2025-06-03 15:30:37,716 | INFO     | sum of deviations: -42484210548.0
[2025-06-03 17:30:54] 2025-06-03 15:30:37,716 | INFO     | mean x: 1748957396.0
[2025-06-03 17:30:54] 2025-06-03 15:30:37,716 | INFO     | mean y: 2595171.3087557605
[2025-06-03 17:30:54] 2025-06-03 15:30:37,716 | INFO     | -- intersect: 23453433911.73227
[2025-06-03 17:30:54] 2025-06-03 15:30:37,716 | INFO     | intersect: 23453433911.73227
[2025-06-03 17:30:54] 2025-06-03 15:30:37,716 | INFO     | chi2: 2.1326440875721566
[2025-06-03 17:30:54] 2025-06-03 15:30:37,717 | INFO     | current chi2=2.1326440875721566 (change=-0.0017111346457813644 %)
[2025-06-03 17:30:54] 2025-06-03 15:30:37,717 | INFO     | right removable region: 216
[2025-06-03 17:30:54] 2025-06-03 15:30:37,717 | INFO     | sum of square deviations: 3392567795.5
[2025-06-03 17:30:54] 2025-06-03 15:30:37,719 | INFO     | sum of deviations: -108406655202.0
[2025-06-03 17:30:54] 2025-06-03 15:30:37,719 | INFO     | mean x: 1748957853.5
[2025-06-03 17:30:54] 2025-06-03 15:30:37,719 | INFO     | mean y: 2610143.5315315314
[2025-06-03 17:30:54] 2025-06-03 15:30:37,719 | INFO     | -- intersect: 55889089770.760704
[2025-06-03 17:30:54] 2025-06-03 15:30:37,720 | INFO     | intersect: 55889089770.760704
[2025-06-03 17:30:54] 2025-06-03 15:30:37,720 | INFO     | chi2: 1.0257920282949669
[2025-06-03 17:30:54] 2025-06-03 15:30:37,720 | INFO     | current chi2=1.0257920282949669 (change=64.64398476837695 %)
[2025-06-03 17:30:54] 2025-06-03 15:30:37,720 | INFO     | sum of square deviations: 3168461268.0
[2025-06-03 17:30:54] 2025-06-03 15:30:37,722 | INFO     | sum of deviations: -109362880283.0
[2025-06-03 17:30:54] 2025-06-03 15:30:37,722 | INFO     | mean x: 1748958006.0
[2025-06-03 17:30:54] 2025-06-03 15:30:37,723 | INFO     | mean y: 2610758.35483871
[2025-06-03 17:30:54] 2025-06-03 15:30:37,723 | INFO     | -- intersect: 60369794969.164764
[2025-06-03 17:30:54] 2025-06-03 15:30:37,723 | INFO     | intersect: 60369794969.164764
[2025-06-03 17:30:54] 2025-06-03 15:30:37,723 | INFO     | chi2: 0.9803105534564839
[2025-06-03 17:30:54] 2025-06-03 15:30:37,723 | INFO     | current chi2=0.9803105534564839 (change=4.433791020396267 %)
[2025-06-03 17:30:54] 2025-06-03 15:30:37,723 | INFO     | left removable region: 20
[2025-06-03 17:30:54] 2025-06-03 15:30:37,724 | INFO     | sum of square deviations: 2334722845.0
[2025-06-03 17:30:54] 2025-06-03 15:30:37,725 | INFO     | sum of deviations: -79378969745.99998
[2025-06-03 17:30:54] 2025-06-03 15:30:37,726 | INFO     | mean x: 1748957975.5
[2025-06-03 17:30:54] 2025-06-03 15:30:37,726 | INFO     | mean y: 2621673.948979592
[2025-06-03 17:30:54] 2025-06-03 15:30:37,726 | INFO     | -- intersect: 59465989037.46997
[2025-06-03 17:30:54] 2025-06-03 15:30:37,726 | INFO     | intersect: 59465989037.46997
[2025-06-03 17:30:54] 2025-06-03 15:30:37,726 | INFO     | chi2: 0.16705971122894195
[2025-06-03 17:30:54] 2025-06-03 15:30:37,727 | INFO     | -- intersect: 59465989037.46997
[2025-06-03 17:30:54] 2025-06-03 15:30:37,727 | INFO     | current memory leak: -34.00 B/s (using 196 data points, chi2=0.17)
[2025-06-03 17:30:54] 2025-06-03 15:30:37,728 | INFO     | ..............................
[2025-06-03 17:30:54] 2025-06-03 15:30:37,728 | INFO     | . Timing measurements:
[2025-06-03 17:30:54] 2025-06-03 15:30:37,728 | INFO     | . get job = 0 s
[2025-06-03 17:30:54] 2025-06-03 15:30:37,728 | INFO     | . initial setup = 2 s
[2025-06-03 17:30:54] 2025-06-03 15:30:37,728 | INFO     | . payload setup = 13 s
[2025-06-03 17:30:54] 2025-06-03 15:30:37,728 | INFO     | . stage-in = 0 s
[2025-06-03 17:30:54] 2025-06-03 15:30:37,728 | INFO     | . payload execution = 13843 s
[2025-06-03 17:30:54] 2025-06-03 15:30:37,728 | INFO     | . stage-out = 2 s
[2025-06-03 17:30:54] 2025-06-03 15:30:37,729 | INFO     | . log creation = 0 s
[2025-06-03 17:30:54] 2025-06-03 15:30:37,729 | INFO     | ..............................
[2025-06-03 17:30:54] 2025-06-03 15:30:37,874 | INFO     | 
[2025-06-03 17:30:54] 2025-06-03 15:30:37,874 | INFO     | job summary report
[2025-06-03 17:30:54] 2025-06-03 15:30:37,874 | INFO     | --------------------------------------------------
[2025-06-03 17:30:54] 2025-06-03 15:30:37,874 | INFO     | PanDA job id: 6677393903
[2025-06-03 17:30:54] 2025-06-03 15:30:37,874 | INFO     | task id: 45006595
[2025-06-03 17:30:54] 2025-06-03 15:30:37,874 | INFO     | errors: (none)
[2025-06-03 17:30:54] 2025-06-03 15:30:37,874 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 17:30:54] 2025-06-03 15:30:37,875 | INFO     | pilot state: finished 
[2025-06-03 17:30:54] 2025-06-03 15:30:37,875 | INFO     | transexitcode: 0
[2025-06-03 17:30:54] 2025-06-03 15:30:37,875 | INFO     | exeerrorcode: 0
[2025-06-03 17:30:54] 2025-06-03 15:30:37,875 | INFO     | exeerrordiag: 
[2025-06-03 17:30:54] 2025-06-03 15:30:37,875 | INFO     | exitcode: 0
[2025-06-03 17:30:54] 2025-06-03 15:30:37,875 | INFO     | exitmsg: OK
[2025-06-03 17:30:54] 2025-06-03 15:30:37,875 | INFO     | cpuconsumptiontime: 51638 s
[2025-06-03 17:30:54] 2025-06-03 15:30:37,875 | INFO     | nevents: 400
[2025-06-03 17:30:54] 2025-06-03 15:30:37,875 | INFO     | neventsw: 0
[2025-06-03 17:30:54] 2025-06-03 15:30:37,875 | INFO     | pid: 20987
[2025-06-03 17:30:54] 2025-06-03 15:30:37,875 | INFO     | pgrp: 20987
[2025-06-03 17:30:54] 2025-06-03 15:30:37,875 | INFO     | corecount: 8
[2025-06-03 17:30:54] 2025-06-03 15:30:37,875 | INFO     | event service: False
[2025-06-03 17:30:54] 2025-06-03 15:30:37,876 | INFO     | sizes: {0: 2405006, 1: 2405205, 12: 2405205, 16: 2405439, 23: 2405467, 13861: 2435307, 13864: 2444276, 13865: 2444332, 13874: 2444502}
[2025-06-03 17:30:54] 2025-06-03 15:30:37,876 | INFO     | --------------------------------------------------
[2025-06-03 17:30:54] 2025-06-03 15:30:37,876 | INFO     | 
[2025-06-03 17:30:54] 2025-06-03 15:30:37,876 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-03 17:30:54] 2025-06-03 15:30:37,935 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 17:30:54] 2025-06-03 15:30:37,935 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 17:30:54] 2025-06-03 15:30:37,935 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 17:30:54] 2025-06-03 15:30:37,935 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 17:30:54] 2025-06-03 15:30:37,936 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 17:30:54] 2025-06-03 15:30:37,936 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 17:30:54] 2025-06-03 15:30:37,936 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 17:30:54] 2025-06-03 15:30:37,936 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 17:30:54] 2025-06-03 15:30:37,936 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 17:30:54] 2025-06-03 15:30:37,936 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 17:30:54] 2025-06-03 15:30:37,936 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 17:30:54] 2025-06-03 15:30:37,936 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 17:30:54] 2025-06-03 15:30:37,936 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 17:30:54] 2025-06-03 15:30:37,937 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 17:30:54] 2025-06-03 15:30:37,937 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 17:30:54] 2025-06-03 15:30:37,937 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 17:30:54] 2025-06-03 15:30:37,937 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 17:30:54] 2025-06-03 15:30:37,938 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 17:30:54] 2025-06-03 15:30:37,938 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 17:30:54] 2025-06-03 15:30:37,938 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 17:30:54] 2025-06-03 15:30:37,938 | INFO     | job 6677393903 has completed (purged errors)
[2025-06-03 17:30:54] 2025-06-03 15:30:37,938 | INFO     | overall cleanup function is called
[2025-06-03 17:30:54] 2025-06-03 15:30:38,947 | INFO     | --- collectZombieJob: --- 10, [20987]
[2025-06-03 17:30:54] 2025-06-03 15:30:38,948 | INFO     | zombie collector waiting for pid 20987
[2025-06-03 17:30:54] 2025-06-03 15:30:38,948 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 17:30:54] 2025-06-03 15:30:38,948 | INFO     | collected zombie processes
[2025-06-03 17:30:54] 2025-06-03 15:30:38,948 | INFO     | will attempt to kill all subprocesses of pid=20987
[2025-06-03 17:30:54] 2025-06-03 15:30:39,065 | INFO     | process IDs to be killed: [20987] (in reverse order)
[2025-06-03 17:30:54] 2025-06-03 15:30:39,162 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 17:30:54] 2025-06-03 15:30:39,162 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 17:30:54] 2025-06-03 15:30:39,166 | INFO     | did not find any defunct processes belonging to 20987
[2025-06-03 17:30:54] 2025-06-03 15:30:39,168 | INFO     | did not find any defunct processes belonging to 20987
[2025-06-03 17:30:54] 2025-06-03 15:30:39,168 | INFO     | ready for new job
[2025-06-03 17:30:54] 2025-06-03 15:30:39,169 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 17:30:54] 2025-06-03 15:30:39,170 | INFO     | **************************************
[2025-06-03 17:30:54] 2025-06-03 15:30:39,171 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 17:30:54] 2025-06-03 15:30:39,171 | INFO     | **************************************
[2025-06-03 17:30:54] 2025-06-03 15:30:39,171 | INFO     | 
[2025-06-03 17:30:54] 2025-06-03 15:30:39,171 | INFO     | pilot is running in a VM
[2025-06-03 17:30:54] 2025-06-03 15:30:39,172 | INFO     | architecture information:
[2025-06-03 17:30:54] 2025-06-03 15:30:39,172 | INFO     | executing command: cat /etc/os-release
[2025-06-03 17:30:54] 2025-06-03 15:30:39,234 | INFO     | cat /etc/os-release:
[2025-06-03 17:30:54] NAME="CentOS Linux"
[2025-06-03 17:30:54] VERSION="7 (Core)"
[2025-06-03 17:30:54] ID="centos"
[2025-06-03 17:30:54] ID_LIKE="rhel fedora"
[2025-06-03 17:30:54] VERSION_ID="7"
[2025-06-03 17:30:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 17:30:54] ANSI_COLOR="0;31"
[2025-06-03 17:30:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 17:30:54] HOME_URL="https://www.centos.org/"
[2025-06-03 17:30:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 17:30:54] 
[2025-06-03 17:30:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 17:30:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 17:30:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 17:30:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 17:30:54] 
[2025-06-03 17:30:54] 2025-06-03 15:30:39,235 | INFO     | **************************************
[2025-06-03 17:30:54] 2025-06-03 15:30:39,739 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-03 17:30:54] 2025-06-03 15:30:39,850 | INFO     | sufficient remaining disk space (497316528128 B)
[2025-06-03 17:30:54] 2025-06-03 15:30:39,851 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 17:30:54] 2025-06-03 15:30:39,851 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 17:30:54] 2025-06-03 15:30:39,851 | INFO     | update_server=False
[2025-06-03 17:30:54] 2025-06-03 15:30:39,851 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 17:30:54] 2025-06-03 15:30:39,852 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 17:30:54] 2025-06-03 15:30:39,904 | INFO     | all job control threads have been joined
[2025-06-03 17:30:54] 2025-06-03 15:30:40,318 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 17:30:54] 2025-06-03 15:30:40,321 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 17:30:54] 2025-06-03 15:30:40,321 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 17:30:54] 2025-06-03 15:30:40,588 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 17:30:54] 2025-06-03 15:30:40,668 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 17:30:54] 2025-06-03 15:30:40,668 | INFO     | aborting loop
[2025-06-03 17:30:54] 2025-06-03 15:30:40,746 | INFO     | all data control threads have been joined
[2025-06-03 17:30:54] 2025-06-03 15:30:40,858 | INFO     | [job] retrieve thread has finished
[2025-06-03 17:30:54] 2025-06-03 15:30:40,859 | INFO     | [job] queue monitor thread has finished
[2025-06-03 17:30:54] 2025-06-03 15:30:40,910 | INFO     | [job] validate thread has finished
[2025-06-03 17:30:54] 2025-06-03 15:30:40,910 | INFO     | [job] control thread has finished
[2025-06-03 17:30:54] 2025-06-03 15:30:41,021 | INFO     | all payload control threads have been joined
[2025-06-03 17:30:54] 2025-06-03 15:30:41,228 | INFO     | [payload] validate_post thread has finished
[2025-06-03 17:30:54] 2025-06-03 15:30:41,228 | INFO     | [payload] failed_post thread has finished
[2025-06-03 17:30:54] 2025-06-03 15:30:41,560 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 17:30:54] 2025-06-03 15:30:41,605 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 17:30:54] 2025-06-03 15:30:41,619 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 17:30:54] 2025-06-03 15:30:41,673 | INFO     | [job] job monitor thread has finished
[2025-06-03 17:30:54] 2025-06-03 15:30:41,752 | INFO     | [data] control thread has finished
[2025-06-03 17:30:54] 2025-06-03 15:30:42,026 | INFO     | [payload] control thread has finished
[2025-06-03 17:30:54] 2025-06-03 15:30:42,030 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 17:30:54] 2025-06-03 15:30:42,193 | INFO     | [data] copytool_in thread has finished
[2025-06-03 17:30:54] 2025-06-03 15:30:42,594 | INFO     | [data] copytool_out thread has finished
[2025-06-03 17:30:54] 2025-06-03 15:30:43,122 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 17:30:54] 2025-06-03 15:30:47,130 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 17:30:54] 2025-06-03 15:30:48,217 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140395041486656)>', '<ExcThread(monitor, started 140394620774144)>']
[2025-06-03 17:30:54] 2025-06-03 15:30:48,364 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 17:30:54] 2025-06-03 15:30:48,365 | INFO     | [monitor] control thread has ended
[2025-06-03 17:30:54] 2025-06-03 15:30:53,243 | INFO     | all workflow threads have been joined
[2025-06-03 17:30:54] 2025-06-03 15:30:53,244 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 17:30:54] 2025-06-03 15:30:53,244 | INFO     | traces error code: 0
[2025-06-03 17:30:54] 2025-06-03 15:30:53,244 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 17:30:54] 2025-06-03 15:30:53,537 [wrapper] ==== pilot stdout END ====
[2025-06-03 17:30:54] 2025-06-03 15:30:53,589 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 17:30:54] 2025-06-03 15:30:53,627 [wrapper] pilotpid: 12401
[2025-06-03 17:30:54] 2025-06-03 15:30:53,705 [wrapper] Pilot exit status: 0
[2025-06-03 17:30:54] 2025-06-03 15:30:53,817 [wrapper] pandaids: 6677393903
[2025-06-03 17:30:54] 2025-06-03 15:30:53,861 [wrapper] cleanup supervisor_pilot 29248 12402
[2025-06-03 17:30:54] 2025-06-03 15:30:53,868 [wrapper] Test setup, not cleaning
[2025-06-03 17:30:54] 2025-06-03 15:30:53,877 [wrapper] apfmon messages muted
[2025-06-03 17:30:54] 2025-06-03 15:30:53,882 [wrapper] ==== wrapper stdout END ====
[2025-06-03 17:30:54] 2025-06-03 15:30:53,916 [wrapper] ==== wrapper stderr END ====
[2025-06-03 17:30:54]  *** Error codes and diagnostics ***
[2025-06-03 17:30:54]     "exeErrorCode": 0,
[2025-06-03 17:30:54]     "exeErrorDiag": "",
[2025-06-03 17:30:54]     "pilotErrorCode": 0,
[2025-06-03 17:30:54]     "pilotErrorDiag": "",
[2025-06-03 17:30:54]  *** Listing of results directory ***
[2025-06-03 17:30:55] total 392852
[2025-06-03 17:30:55] -rw-r--r--. 1 boinc boinc    495897 Jun  2 21:02 pilot3.tar.gz
[2025-06-03 17:30:55] -rw-r--r--. 1 boinc boinc      5111 Jun  2 21:12 queuedata.json
[2025-06-03 17:30:55] -rwx------. 1 boinc boinc     37140 Jun  2 21:13 runpilot2-wrapper.sh
[2025-06-03 17:30:55] -rw-r--r--. 1 boinc boinc       100 Jun  3 13:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 17:30:55] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 13:38 run_atlas
[2025-06-03 17:30:55] -rw-r--r--. 1 boinc boinc       105 Jun  3 13:38 job.xml
[2025-06-03 17:30:55] -rw-r--r--. 1 boinc boinc      6391 Jun  3 13:38 init_data.xml
[2025-06-03 17:30:55] -rw-r--r--. 2 boinc boinc 213955881 Jun  3 13:38 EVNT.45006593._000356.pool.root.1
[2025-06-03 17:30:55] -rw-r--r--. 2 boinc boinc     15093 Jun  3 13:38 start_atlas.sh
[2025-06-03 17:30:55] drwxrwx--x. 2 boinc boinc        68 Jun  3 13:38 shared
[2025-06-03 17:30:55] -rw-r--r--. 2 boinc boinc    508879 Jun  3 13:38 input.tar.gz
[2025-06-03 17:30:55] -rw-r--r--. 1 boinc boinc         0 Jun  3 13:38 boinc_lockfile
[2025-06-03 17:30:55] -rw-r--r--. 1 boinc boinc      2521 Jun  3 13:38 pandaJob.out
[2025-06-03 17:30:55] -rw-------. 1 boinc boinc    982666 Jun  3 13:38 agis_schedconf.cvmfs.json
[2025-06-03 17:30:55] drwx------. 4 boinc boinc      4096 Jun  3 13:38 pilot3
[2025-06-03 17:30:55] -rw-------. 1 boinc boinc 181343512 Jun  3 17:29 HITS.45006595._008883.pool.root.1
[2025-06-03 17:30:55] -rw-r--r--. 1 boinc boinc       531 Jun  3 17:29 boinc_task_state.xml
[2025-06-03 17:30:55] -rw-------. 1 boinc boinc      1021 Jun  3 17:30 memory_monitor_summary.json
[2025-06-03 17:30:55] -rw-------. 1 boinc boinc        95 Jun  3 17:30 pilot_heartbeat.json
[2025-06-03 17:30:55] -rw-------. 1 boinc boinc   1603667 Jun  3 17:30 agis_ddmendpoints.agis.ALL.json
[2025-06-03 17:30:55] -rw-------. 1 boinc boinc    377284 Jun  3 17:30 log.45006595._008883.job.log.tgz.1
[2025-06-03 17:30:55] -rw-------. 1 boinc boinc      7696 Jun  3 17:30 heartbeat.json
[2025-06-03 17:30:55] -rw-r--r--. 1 boinc boinc      8192 Jun  3 17:30 boinc_mmap_file
[2025-06-03 17:30:55] -rw-r--r--. 1 boinc boinc        28 Jun  3 17:30 wrapper_checkpoint.txt
[2025-06-03 17:30:55] -rw-------. 1 boinc boinc      4416 Jun  3 17:30 pilotlog.txt
[2025-06-03 17:30:55] -rw-------. 1 boinc boinc   1205114 Jun  3 17:30 log.45006595._008883.job.log.1
[2025-06-03 17:30:55] -rw-------. 1 boinc boinc       357 Jun  3 17:30 output.list
[2025-06-03 17:30:55] -rw-r--r--. 1 boinc boinc       620 Jun  3 17:30 runtime_log
[2025-06-03 17:30:55] -rw-------. 1 boinc boinc   1597440 Jun  3 17:30 result.tar.gz
[2025-06-03 17:30:55] -rw-------. 1 boinc boinc       656 Jun  3 17:30 v6EMDmzlPg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm9DgKDmvo5kXm.diag
[2025-06-03 17:30:55] -rw-r--r--. 1 boinc boinc      8659 Jun  3 17:30 runtime_log.err
[2025-06-03 17:30:55] -rw-r--r--. 1 boinc boinc     20494 Jun  3 17:30 stderr.txt
[2025-06-03 17:30:55] HITS file was successfully produced:
[2025-06-03 17:30:55] -rw-------. 1 boinc boinc 181343512 Jun  3 17:29 shared/HITS.pool.root.1
[2025-06-03 17:30:55]  *** Contents of shared directory: ***
[2025-06-03 17:30:55] total 388116
[2025-06-03 17:30:55] -rw-r--r--. 2 boinc boinc 213955881 Jun  3 13:38 ATLAS.root_0
[2025-06-03 17:30:55] -rw-r--r--. 2 boinc boinc     15093 Jun  3 13:38 start_atlas.sh
[2025-06-03 17:30:55] -rw-r--r--. 2 boinc boinc    508879 Jun  3 13:38 input.tar.gz
[2025-06-03 17:30:55] -rw-------. 1 boinc boinc 181343512 Jun  3 17:29 HITS.pool.root.1
[2025-06-03 17:30:55] -rw-------. 1 boinc boinc   1597440 Jun  3 17:30 result.tar.gz
17:30:56 (8414): run_atlas exited; CPU time 51811.582867
17:30:56 (8414): called boinc_finish(0)

</stderr_txt>
]]>

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