Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:33:24 (16860): wrapper (7.7.26015): starting
07:33:24 (16860): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 07:33:24] Arguments: --nthreads 8
[2025-06-03 07:33:24] Threads: 8
[2025-06-03 07:33:24] Checking for CVMFS
[2025-06-03 07:33:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 07:33:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 07:33:25] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 07:33:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 07:33:26] 2.11.2.0 13026 31479 90204 146729 3 59 17517460 25165824 4635 130560 0 16091579 99.842 17757056 2744 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 07:33:26] CVMFS is ok
[2025-06-03 07:33:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 07:33:26] Checking for apptainer binary...
[2025-06-03 07:33:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 07:33:26] Running /usr/bin/apptainer --version
[2025-06-03 07:33:26] apptainer version 1.3.2-1.el7
[2025-06-03 07:33:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 07:33:37] cg-vwn329.simple-grid.lan
[2025-06-03 07:33:37] apptainer works
[2025-06-03 07:33:37] Set ATHENA_PROC_NUMBER=8
[2025-06-03 07:33:37] Set ATHENA_CORE_NUMBER=8
[2025-06-03 07:33:37] Starting ATLAS job with PandaID=6677393298
[2025-06-03 07:33:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 11:39:24]  *** The last 200 lines of the pilot log: ***
[2025-06-03 11:39:24] 2025-06-03 09:21:03,283 | INFO     | extracted standard info from prmon json
[2025-06-03 11:39:24] 2025-06-03 09:21:03,283 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 11:39:24] 2025-06-03 09:21:03,283 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 11:39:24] 2025-06-03 09:21:03,284 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 11:39:24] 2025-06-03 09:21:03,284 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 11:39:24] 2025-06-03 09:21:03,288 | INFO     | fitting pss+swap vs Time
[2025-06-03 11:39:24] 2025-06-03 09:21:03,289 | INFO     | sum of square deviations: 2912836010.0
[2025-06-03 11:39:24] 2025-06-03 09:21:03,291 | INFO     | sum of deviations: 81664548978.0
[2025-06-03 11:39:24] 2025-06-03 09:21:03,291 | INFO     | mean x: 1748935912.0
[2025-06-03 11:39:24] 2025-06-03 09:21:03,291 | INFO     | mean y: 2410434.0426540286
[2025-06-03 11:39:24] 2025-06-03 09:21:03,292 | INFO     | -- intersect: -49030924073.829994
[2025-06-03 11:39:24] 2025-06-03 09:21:03,292 | INFO     | intersect: -49030924073.829994
[2025-06-03 11:39:24] 2025-06-03 09:21:03,292 | INFO     | chi2: 8.555577427435866
[2025-06-03 11:39:24] 2025-06-03 09:21:03,293 | INFO     | sum of square deviations: 2710627567.5
[2025-06-03 11:39:24] 2025-06-03 09:21:03,295 | INFO     | sum of deviations: 93428235986.00003
[2025-06-03 11:39:24] 2025-06-03 09:21:03,295 | INFO     | mean x: 1748935759.5
[2025-06-03 11:39:24] 2025-06-03 09:21:03,295 | INFO     | mean y: 2419104.650485437
[2025-06-03 11:39:24] 2025-06-03 09:21:03,295 | INFO     | -- intersect: -60278817912.954
[2025-06-03 11:39:24] 2025-06-03 09:21:03,295 | INFO     | intersect: -60278817912.954
[2025-06-03 11:39:24] 2025-06-03 09:21:03,296 | INFO     | chi2: 7.881171860614889
[2025-06-03 11:39:24] 2025-06-03 09:21:03,296 | INFO     | current chi2=7.881171860614889 (change=7.882642317727215 %)
[2025-06-03 11:39:24] 2025-06-03 09:21:03,296 | INFO     | right removable region: 205
[2025-06-03 11:39:24] 2025-06-03 09:21:03,297 | INFO     | sum of square deviations: 2710627567.5
[2025-06-03 11:39:24] 2025-06-03 09:21:03,298 | INFO     | sum of deviations: 6689345491.500002
[2025-06-03 11:39:24] 2025-06-03 09:21:03,299 | INFO     | mean x: 1748936064.5
[2025-06-03 11:39:24] 2025-06-03 09:21:03,299 | INFO     | mean y: 2466955.665048544
[2025-06-03 11:39:24] 2025-06-03 09:21:03,299 | INFO     | -- intersect: -4313595390.286442
[2025-06-03 11:39:24] 2025-06-03 09:21:03,299 | INFO     | intersect: -4313595390.286442
[2025-06-03 11:39:24] 2025-06-03 09:21:03,299 | INFO     | chi2: 3.120229554018435
[2025-06-03 11:39:24] 2025-06-03 09:21:03,300 | INFO     | current chi2=3.120229554018435 (change=63.5298776677242 %)
[2025-06-03 11:39:24] 2025-06-03 09:21:03,300 | INFO     | sum of square deviations: 2518000700.0
[2025-06-03 11:39:24] 2025-06-03 09:21:03,302 | INFO     | sum of deviations: -39009956463.0
[2025-06-03 11:39:24] 2025-06-03 09:21:03,302 | INFO     | mean x: 1748936217.0
[2025-06-03 11:39:24] 2025-06-03 09:21:03,302 | INFO     | mean y: 2502971.646766169
[2025-06-03 11:39:24] 2025-06-03 09:21:03,302 | INFO     | -- intersect: 27097779665.467354
[2025-06-03 11:39:24] 2025-06-03 09:21:03,302 | INFO     | intersect: 27097779665.467354
[2025-06-03 11:39:24] 2025-06-03 09:21:03,303 | INFO     | chi2: 1.0259027261476512
[2025-06-03 11:39:24] 2025-06-03 09:21:03,303 | INFO     | current chi2=1.0259027261476512 (change=67.12092144546138 %)
[2025-06-03 11:39:24] 2025-06-03 09:21:03,303 | INFO     | sum of square deviations: 2334722845.0
[2025-06-03 11:39:24] 2025-06-03 09:21:03,305 | INFO     | sum of deviations: -42802640399.50001
[2025-06-03 11:39:24] 2025-06-03 09:21:03,305 | INFO     | mean x: 1748936369.5
[2025-06-03 11:39:24] 2025-06-03 09:21:03,305 | INFO     | mean y: 2506063.2091836734
[2025-06-03 11:39:24] 2025-06-03 09:21:03,305 | INFO     | -- intersect: 32065881236.683174
[2025-06-03 11:39:24] 2025-06-03 09:21:03,306 | INFO     | intersect: 32065881236.683174
[2025-06-03 11:39:24] 2025-06-03 09:21:03,306 | INFO     | chi2: 0.9679616045379529
[2025-06-03 11:39:24] 2025-06-03 09:21:03,306 | INFO     | current chi2=0.9679616045379529 (change=5.647818270965318 %)
[2025-06-03 11:39:24] 2025-06-03 09:21:03,306 | INFO     | left removable region: 30
[2025-06-03 11:39:24] 2025-06-03 09:21:03,307 | INFO     | sum of square deviations: 1661798600.0
[2025-06-03 11:39:24] 2025-06-03 09:21:03,308 | INFO     | sum of deviations: -9608159532.000004
[2025-06-03 11:39:24] 2025-06-03 09:21:03,308 | INFO     | mean x: 1748936644.0
[2025-06-03 11:39:24] 2025-06-03 09:21:03,308 | INFO     | mean y: 2498997.6342857145
[2025-06-03 11:39:24] 2025-06-03 09:21:03,309 | INFO     | -- intersect: 10114471824.493507
[2025-06-03 11:39:24] 2025-06-03 09:21:03,309 | INFO     | intersect: 10114471824.493507
[2025-06-03 11:39:24] 2025-06-03 09:21:03,309 | INFO     | chi2: 0.10757782433488265
[2025-06-03 11:39:24] 2025-06-03 09:21:03,309 | INFO     | -- intersect: 10114471824.493507
[2025-06-03 11:39:24] 2025-06-03 09:21:03,309 | INFO     | current memory leak: -5.78 B/s (using 175 data points, chi2=0.11)
[2025-06-03 11:39:24] 2025-06-03 09:21:03,310 | INFO     | ..............................
[2025-06-03 11:39:24] 2025-06-03 09:21:03,311 | INFO     | . Timing measurements:
[2025-06-03 11:39:24] 2025-06-03 09:21:03,311 | INFO     | . get job = 0 s
[2025-06-03 11:39:24] 2025-06-03 09:21:03,311 | INFO     | . initial setup = 3 s
[2025-06-03 11:39:24] 2025-06-03 09:21:03,311 | INFO     | . payload setup = 165 s
[2025-06-03 11:39:24] 2025-06-03 09:21:03,311 | INFO     | . stage-in = 0 s
[2025-06-03 11:39:24] 2025-06-03 09:21:03,311 | INFO     | . payload execution = 13009 s
[2025-06-03 11:39:24] 2025-06-03 09:21:03,311 | INFO     | . stage-out = 3 s
[2025-06-03 11:39:24] 2025-06-03 09:21:03,311 | INFO     | . log creation = 1 s
[2025-06-03 11:39:24] 2025-06-03 09:21:03,311 | INFO     | ..............................
[2025-06-03 11:39:24] 2025-06-03 09:21:03,441 | INFO     | 
[2025-06-03 11:39:24] 2025-06-03 09:21:03,441 | INFO     | job summary report
[2025-06-03 11:39:24] 2025-06-03 09:21:03,441 | INFO     | --------------------------------------------------
[2025-06-03 11:39:24] 2025-06-03 09:21:03,441 | INFO     | PanDA job id: 6677393298
[2025-06-03 11:39:24] 2025-06-03 09:21:03,441 | INFO     | task id: 45006595
[2025-06-03 11:39:24] 2025-06-03 09:21:03,441 | INFO     | errors: (none)
[2025-06-03 11:39:24] 2025-06-03 09:21:03,442 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 11:39:24] 2025-06-03 09:21:03,442 | INFO     | pilot state: finished 
[2025-06-03 11:39:24] 2025-06-03 09:21:03,442 | INFO     | transexitcode: 0
[2025-06-03 11:39:24] 2025-06-03 09:21:03,442 | INFO     | exeerrorcode: 0
[2025-06-03 11:39:24] 2025-06-03 09:21:03,442 | INFO     | exeerrordiag: 
[2025-06-03 11:39:24] 2025-06-03 09:21:03,442 | INFO     | exitcode: 0
[2025-06-03 11:39:24] 2025-06-03 09:21:03,442 | INFO     | exitmsg: OK
[2025-06-03 11:39:24] 2025-06-03 09:21:03,442 | INFO     | cpuconsumptiontime: 47134 s
[2025-06-03 11:39:24] 2025-06-03 09:21:03,442 | INFO     | nevents: 400
[2025-06-03 11:39:24] 2025-06-03 09:21:03,442 | INFO     | neventsw: 0
[2025-06-03 11:39:24] 2025-06-03 09:21:03,442 | INFO     | pid: 30339
[2025-06-03 11:39:24] 2025-06-03 09:21:03,442 | INFO     | pgrp: 30339
[2025-06-03 11:39:24] 2025-06-03 09:21:03,443 | INFO     | corecount: 8
[2025-06-03 11:39:24] 2025-06-03 09:21:03,443 | INFO     | event service: False
[2025-06-03 11:39:24] 2025-06-03 09:21:03,443 | INFO     | sizes: {0: 2404950, 1: 2405205, 2: 2405205, 12: 2405233, 23: 2405261, 34: 2405289, 45: 2405445, 55: 2405473, 66: 2405501, 77: 2405529, 87: 2405791, 88: 2406099, 13
[2025-06-03 11:39:24] 2025-06-03 09:21:03,443 | INFO     | --------------------------------------------------
[2025-06-03 11:39:24] 2025-06-03 09:21:03,443 | INFO     | 
[2025-06-03 11:39:24] 2025-06-03 09:21:03,443 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-03 11:39:24] 2025-06-03 09:21:03,885 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 11:39:24] 2025-06-03 09:21:03,885 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 11:39:24] 2025-06-03 09:21:03,885 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 11:39:24] 2025-06-03 09:21:03,886 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 11:39:24] 2025-06-03 09:21:03,886 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 11:39:24] 2025-06-03 09:21:03,886 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 11:39:24] 2025-06-03 09:21:03,886 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 11:39:24] 2025-06-03 09:21:03,886 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 11:39:24] 2025-06-03 09:21:03,886 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 11:39:24] 2025-06-03 09:21:03,886 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 11:39:24] 2025-06-03 09:21:03,886 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 11:39:24] 2025-06-03 09:21:03,886 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 11:39:24] 2025-06-03 09:21:03,886 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 11:39:24] 2025-06-03 09:21:03,886 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 11:39:24] 2025-06-03 09:21:03,887 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 11:39:24] 2025-06-03 09:21:03,887 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 11:39:24] 2025-06-03 09:21:03,887 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 11:39:24] 2025-06-03 09:21:03,887 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 11:39:24] 2025-06-03 09:21:03,887 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 11:39:24] 2025-06-03 09:21:03,887 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 11:39:24] 2025-06-03 09:21:03,887 | INFO     | job 6677393298 has completed (purged errors)
[2025-06-03 11:39:24] 2025-06-03 09:21:03,887 | INFO     | overall cleanup function is called
[2025-06-03 11:39:24] 2025-06-03 09:21:04,896 | INFO     | --- collectZombieJob: --- 10, [30339]
[2025-06-03 11:39:24] 2025-06-03 09:21:04,897 | INFO     | zombie collector waiting for pid 30339
[2025-06-03 11:39:24] 2025-06-03 09:21:04,897 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 11:39:24] 2025-06-03 09:21:04,897 | INFO     | collected zombie processes
[2025-06-03 11:39:24] 2025-06-03 09:21:04,897 | INFO     | will attempt to kill all subprocesses of pid=30339
[2025-06-03 11:39:24] 2025-06-03 09:21:05,002 | INFO     | process IDs to be killed: [30339] (in reverse order)
[2025-06-03 11:39:24] 2025-06-03 09:21:05,879 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 11:39:24] 2025-06-03 09:21:05,880 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 11:39:24] 2025-06-03 09:21:05,883 | INFO     | did not find any defunct processes belonging to 30339
[2025-06-03 11:39:24] 2025-06-03 09:21:05,886 | INFO     | did not find any defunct processes belonging to 30339
[2025-06-03 11:39:24] 2025-06-03 09:21:05,887 | INFO     | ready for new job
[2025-06-03 11:39:24] 2025-06-03 09:21:05,887 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 11:39:24] 2025-06-03 09:21:05,889 | INFO     | **************************************
[2025-06-03 11:39:24] 2025-06-03 09:21:05,889 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 11:39:24] 2025-06-03 09:21:05,889 | INFO     | **************************************
[2025-06-03 11:39:24] 2025-06-03 09:21:05,889 | INFO     | 
[2025-06-03 11:39:24] 2025-06-03 09:21:05,890 | INFO     | pilot is running in a VM
[2025-06-03 11:39:24] 2025-06-03 09:21:05,890 | INFO     | architecture information:
[2025-06-03 11:39:24] 2025-06-03 09:21:05,906 | INFO     | executing command: cat /etc/os-release
[2025-06-03 11:39:24] 2025-06-03 09:21:06,204 | INFO     | cat /etc/os-release:
[2025-06-03 11:39:24] NAME="CentOS Linux"
[2025-06-03 11:39:24] VERSION="7 (Core)"
[2025-06-03 11:39:24] ID="centos"
[2025-06-03 11:39:24] ID_LIKE="rhel fedora"
[2025-06-03 11:39:24] VERSION_ID="7"
[2025-06-03 11:39:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 11:39:24] ANSI_COLOR="0;31"
[2025-06-03 11:39:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 11:39:24] HOME_URL="https://www.centos.org/"
[2025-06-03 11:39:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 11:39:24] 
[2025-06-03 11:39:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 11:39:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 11:39:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 11:39:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 11:39:24] 
[2025-06-03 11:39:24] 2025-06-03 09:21:06,204 | INFO     | **************************************
[2025-06-03 11:39:24] 2025-06-03 09:21:06,708 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-03 11:39:24] 2025-06-03 09:21:06,979 | INFO     | sufficient remaining disk space (496660119552 B)
[2025-06-03 11:39:24] 2025-06-03 09:21:06,980 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 11:39:24] 2025-06-03 09:21:06,980 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 11:39:24] 2025-06-03 09:21:06,980 | INFO     | update_server=False
[2025-06-03 11:39:24] 2025-06-03 09:21:06,980 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 11:39:24] 2025-06-03 09:21:06,981 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 11:39:24] 2025-06-03 09:21:06,981 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 11:39:24] 2025-06-03 09:21:06,981 | INFO     | aborting loop
[2025-06-03 11:39:24] 2025-06-03 09:21:06,982 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 11:39:24] 2025-06-03 09:21:06,982 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 11:39:24] 2025-06-03 09:21:06,982 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 11:39:24] 2025-06-03 09:21:06,982 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 11:39:24] 2025-06-03 09:21:07,239 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 11:39:24] 2025-06-03 09:21:07,573 | INFO     | all data control threads have been joined
[2025-06-03 11:39:24] 2025-06-03 09:21:07,927 | INFO     | all payload control threads have been joined
[2025-06-03 11:39:24] 2025-06-03 09:21:07,987 | INFO     | [job] job monitor thread has finished
[2025-06-03 11:39:24] 2025-06-03 09:21:07,992 | INFO     | [job] retrieve thread has finished
[2025-06-03 11:39:24] 2025-06-03 09:21:08,003 | INFO     | [job] validate thread has finished
[2025-06-03 11:39:24] 2025-06-03 09:21:08,224 | INFO     | [payload] validate_post thread has finished
[2025-06-03 11:39:24] 2025-06-03 09:21:08,290 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 11:39:24] 2025-06-03 09:21:08,457 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 11:39:24] 2025-06-03 09:21:08,579 | INFO     | [data] control thread has finished
[2025-06-03 11:39:24] 2025-06-03 09:21:08,621 | INFO     | all job control threads have been joined
[2025-06-03 11:39:24] 2025-06-03 09:21:08,658 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 11:39:24] 2025-06-03 09:21:08,841 | INFO     | [data] copytool_in thread has finished
[2025-06-03 11:39:24] 2025-06-03 09:21:08,934 | INFO     | [payload] control thread has finished
[2025-06-03 11:39:24] 2025-06-03 09:21:08,988 | INFO     | [data] copytool_out thread has finished
[2025-06-03 11:39:24] 2025-06-03 09:21:09,131 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 11:39:24] 2025-06-03 09:21:09,350 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 11:39:24] 2025-06-03 09:21:09,455 | INFO     | [payload] failed_post thread has finished
[2025-06-03 11:39:24] 2025-06-03 09:21:09,464 | INFO     | [job] queue monitor thread has finished
[2025-06-03 11:39:24] 2025-06-03 09:21:09,627 | INFO     | [job] control thread has finished
[2025-06-03 11:39:24] 2025-06-03 09:21:11,249 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 11:39:24] 2025-06-03 09:21:12,160 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140436362491712)>', '<ExcThread(monitor, started 140435624290048)>']
[2025-06-03 11:39:24] 2025-06-03 09:21:13,020 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 11:39:24] 2025-06-03 09:21:13,021 | INFO     | [monitor] control thread has ended
[2025-06-03 11:39:24] 2025-06-03 09:21:17,186 | INFO     | all workflow threads have been joined
[2025-06-03 11:39:24] 2025-06-03 09:21:17,186 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 11:39:24] 2025-06-03 09:21:17,186 | INFO     | traces error code: 0
[2025-06-03 11:39:24] 2025-06-03 09:21:17,186 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 11:39:24] 2025-06-03 09:21:17,494 [wrapper] ==== pilot stdout END ====
[2025-06-03 11:39:24] 2025-06-03 09:21:17,613 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 11:39:24] 2025-06-03 09:21:17,667 [wrapper] pilotpid: 21720
[2025-06-03 11:39:24] 2025-06-03 09:21:17,728 [wrapper] Pilot exit status: 0
[2025-06-03 11:39:24] 2025-06-03 09:21:18,054 [wrapper] pandaids: 6677393298
[2025-06-03 11:39:24] 2025-06-03 09:21:19,024 [wrapper] cleanup supervisor_pilot 14271 21721
[2025-06-03 11:39:24] 2025-06-03 09:21:19,058 [wrapper] Test setup, not cleaning
[2025-06-03 11:39:24] 2025-06-03 09:21:19,066 [wrapper] apfmon messages muted
[2025-06-03 11:39:24] 2025-06-03 09:21:19,076 [wrapper] ==== wrapper stdout END ====
[2025-06-03 11:39:24] 2025-06-03 09:21:19,085 [wrapper] ==== wrapper stderr END ====
[2025-06-03 11:39:24]  *** Error codes and diagnostics ***
[2025-06-03 11:39:24]     "exeErrorCode": 0,
[2025-06-03 11:39:24]     "exeErrorDiag": "",
[2025-06-03 11:39:24]     "pilotErrorCode": 0,
[2025-06-03 11:39:24]     "pilotErrorDiag": "",
[2025-06-03 11:39:24]  *** Listing of results directory ***
[2025-06-03 11:39:24] total 386828
[2025-06-03 11:39:24] -rw-r--r--. 1 boinc boinc    495897 Jun  2 20:47 pilot3.tar.gz
[2025-06-03 11:39:24] -rwx------. 1 boinc boinc     37140 Jun  2 20:59 runpilot2-wrapper.sh
[2025-06-03 11:39:24] -rw-r--r--. 1 boinc boinc      5111 Jun  2 20:59 queuedata.json
[2025-06-03 11:39:24] -rw-r--r--. 1 boinc boinc       100 Jun  3 07:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 11:39:24] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 07:33 run_atlas
[2025-06-03 11:39:24] -rw-r--r--. 1 boinc boinc       105 Jun  3 07:33 job.xml
[2025-06-03 11:39:24] -rw-r--r--. 1 boinc boinc      6391 Jun  3 07:33 init_data.xml
[2025-06-03 11:39:24] -rw-r--r--. 2 boinc boinc 216883127 Jun  3 07:33 EVNT.45006593._000339.pool.root.1
[2025-06-03 11:39:24] -rw-r--r--. 2 boinc boinc     15093 Jun  3 07:33 start_atlas.sh
[2025-06-03 11:39:24] drwxrwx--x. 2 boinc boinc        68 Jun  3 07:33 shared
[2025-06-03 11:39:24] -rw-r--r--. 2 boinc boinc    508875 Jun  3 07:33 input.tar.gz
[2025-06-03 11:39:24] -rw-r--r--. 1 boinc boinc         0 Jun  3 07:33 boinc_lockfile
[2025-06-03 11:39:24] -rw-r--r--. 1 boinc boinc      2521 Jun  3 07:33 pandaJob.out
[2025-06-03 11:39:24] -rw-------. 1 boinc boinc    988073 Jun  3 07:36 agis_schedconf.cvmfs.json
[2025-06-03 11:39:24] drwx------. 4 boinc boinc      4096 Jun  3 07:36 pilot3
[2025-06-03 11:39:24] -rw-------. 1 boinc boinc 172331853 Jun  3 11:18 HITS.45006595._008473.pool.root.1
[2025-06-03 11:39:24] -rw-r--r--. 1 boinc boinc       531 Jun  3 11:18 boinc_task_state.xml
[2025-06-03 11:39:24] -rw-------. 1 boinc boinc      1018 Jun  3 11:19 memory_monitor_summary.json
[2025-06-03 11:39:24] -rw-------. 1 boinc boinc   1603667 Jun  3 11:19 agis_ddmendpoints.agis.ALL.json
[2025-06-03 11:39:24] -rw-------. 1 boinc boinc    386617 Jun  3 11:19 log.45006595._008473.job.log.tgz.1
[2025-06-03 11:39:24] -rw-------. 1 boinc boinc        95 Jun  3 11:20 pilot_heartbeat.json
[2025-06-03 11:39:24] -rw-------. 1 boinc boinc      7691 Jun  3 11:21 heartbeat.json
[2025-06-03 11:39:24] -rw-------. 1 boinc boinc      4539 Jun  3 11:21 pilotlog.txt
[2025-06-03 11:39:24] -rw-------. 1 boinc boinc   1150504 Jun  3 11:21 log.45006595._008473.job.log.1
[2025-06-03 11:39:24] -rw-------. 1 boinc boinc       357 Jun  3 11:21 output.list
[2025-06-03 11:39:24] -rw-r--r--. 1 boinc boinc       620 Jun  3 11:21 runtime_log
[2025-06-03 11:39:24] -rw-------. 1 boinc boinc   1556480 Jun  3 11:21 result.tar.gz
[2025-06-03 11:39:24] -rw-------. 1 boinc boinc       656 Jun  3 11:21 yS5MDmPYPg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm98fKDmftjvrm.diag
[2025-06-03 11:39:24] -rw-r--r--. 1 boinc boinc      8659 Jun  3 11:21 runtime_log.err
[2025-06-03 11:39:24] -rw-r--r--. 1 boinc boinc      8192 Jun  3 11:39 boinc_mmap_file
[2025-06-03 11:39:24] -rw-r--r--. 1 boinc boinc        28 Jun  3 11:39 wrapper_checkpoint.txt
[2025-06-03 11:39:24] -rw-r--r--. 1 boinc boinc     20507 Jun  3 11:39 stderr.txt
[2025-06-03 11:39:24] HITS file was successfully produced:
[2025-06-03 11:39:24] -rw-------. 1 boinc boinc 172331853 Jun  3 11:18 shared/HITS.pool.root.1
[2025-06-03 11:39:24]  *** Contents of shared directory: ***
[2025-06-03 11:39:24] total 382132
[2025-06-03 11:39:24] -rw-r--r--. 2 boinc boinc 216883127 Jun  3 07:33 ATLAS.root_0
[2025-06-03 11:39:24] -rw-r--r--. 2 boinc boinc     15093 Jun  3 07:33 start_atlas.sh
[2025-06-03 11:39:24] -rw-r--r--. 2 boinc boinc    508875 Jun  3 07:33 input.tar.gz
[2025-06-03 11:39:24] -rw-------. 1 boinc boinc 172331853 Jun  3 11:18 HITS.pool.root.1
[2025-06-03 11:39:24] -rw-------. 1 boinc boinc   1556480 Jun  3 11:21 result.tar.gz
11:39:26 (16860): run_atlas exited; CPU time 47322.170498
11:39:26 (16860): called boinc_finish(0)

</stderr_txt>
]]>

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