Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:03:40 (1512018): wrapper (7.7.26015): starting
18:03:40 (1512018): wrapper: running run_atlas (--nthreads 4)
[2025-06-04 18:03:40] Arguments: --nthreads 4
[2025-06-04 18:03:40] Threads: 4
[2025-06-04 18:03:40] Checking for CVMFS
[2025-06-04 18:03:40] No cvmfs_config command found, will try listing directly
[2025-06-04 18:03:40] CVMFS is ok
[2025-06-04 18:03:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 18:03:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 18:03:40] Further information can be found at the LHC@home message board.
[2025-06-04 18:03:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 18:03:40] Checking for apptainer binary...
[2025-06-04 18:03:40] which: no apptainer in ((null))
[2025-06-04 18:03:40] apptainer is not installed, using version from CVMFS
[2025-06-04 18:03:40] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 18:03:40] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot48/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz
[2025-06-04 18:03:40] apptainer works
[2025-06-04 18:03:40] Set ATHENA_PROC_NUMBER=4
[2025-06-04 18:03:40] Set ATHENA_CORE_NUMBER=4
[2025-06-04 18:03:40] Starting ATLAS job with PandaID=6677384339
[2025-06-04 18:03:40] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot48/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 20:40:12]  *** The last 200 lines of the pilot log: ***
[2025-06-04 20:40:12] 2025-06-04 18:38:53,821 | INFO     | intersect: -1939547875.0374994
[2025-06-04 20:40:12] 2025-06-04 18:38:53,821 | INFO     | chi2: 0.004031905616396496
[2025-06-04 20:40:12] 2025-06-04 18:38:53,821 | INFO     | current chi2=0.004031905616396496 (change=99.74991689194516 %)
[2025-06-04 20:40:12] 2025-06-04 18:38:53,821 | INFO     | sum of square deviations: 887813855.5
[2025-06-04 20:40:12] 2025-06-04 18:38:53,822 | INFO     | sum of deviations: 2184051015.0
[2025-06-04 20:40:12] 2025-06-04 18:38:53,822 | INFO     | mean x: 1749057968.5
[2025-06-04 20:40:12] 2025-06-04 18:38:53,822 | INFO     | mean y: 2324375.38028169
[2025-06-04 20:40:12] 2025-06-04 18:38:53,823 | INFO     | -- intersect: -4300415222.26307
[2025-06-04 20:40:12] 2025-06-04 18:38:53,823 | INFO     | intersect: -4300415222.26307
[2025-06-04 20:40:12] 2025-06-04 18:38:53,823 | INFO     | chi2: 0.0006019083360123743
[2025-06-04 20:40:12] 2025-06-04 18:38:53,823 | INFO     | current chi2=0.0006019083360123743 (change=85.0713683979952 %)
[2025-06-04 20:40:12] 2025-06-04 18:38:53,823 | INFO     | sum of square deviations: 797291228.0
[2025-06-04 20:40:12] 2025-06-04 18:38:53,824 | INFO     | sum of deviations: 1591502992.9999995
[2025-06-04 20:40:12] 2025-06-04 18:38:53,824 | INFO     | mean x: 1749058121.0
[2025-06-04 20:40:12] 2025-06-04 18:38:53,824 | INFO     | mean y: 2325370.5036496352
[2025-06-04 20:40:12] 2025-06-04 18:38:53,824 | INFO     | -- intersect: -3489035297.6491613
[2025-06-04 20:40:12] 2025-06-04 18:38:53,824 | INFO     | intersect: -3489035297.6491613
[2025-06-04 20:40:12] 2025-06-04 18:38:53,825 | INFO     | chi2: 0.00025679754928785653
[2025-06-04 20:40:12] 2025-06-04 18:38:53,825 | INFO     | current chi2=0.00025679754928785653 (change=57.336103535443115 %)
[2025-06-04 20:40:12] 2025-06-04 18:38:53,825 | INFO     | sum of square deviations: 713140813.0
[2025-06-04 20:40:12] 2025-06-04 18:38:53,826 | INFO     | sum of deviations: 1256080066.5
[2025-06-04 20:40:12] 2025-06-04 18:38:53,826 | INFO     | mean x: 1749058273.5
[2025-06-04 20:40:12] 2025-06-04 18:38:53,826 | INFO     | mean y: 2325978.643939394
[2025-06-04 20:40:12] 2025-06-04 18:38:53,826 | INFO     | -- intersect: -3078352047.9693756
[2025-06-04 20:40:12] 2025-06-04 18:38:53,826 | INFO     | intersect: -3078352047.9693756
[2025-06-04 20:40:12] 2025-06-04 18:38:53,826 | INFO     | chi2: 0.00018735864325470644
[2025-06-04 20:40:12] 2025-06-04 18:38:53,826 | INFO     | current chi2=0.00018735864325470644 (change=27.040330496033178 %)
[2025-06-04 20:40:12] 2025-06-04 18:38:53,827 | INFO     | sum of square deviations: 635130048.0
[2025-06-04 20:40:12] 2025-06-04 18:38:53,827 | INFO     | sum of deviations: 970115451.9999998
[2025-06-04 20:40:12] 2025-06-04 18:38:53,827 | INFO     | mean x: 1749058426.0
[2025-06-04 20:40:12] 2025-06-04 18:38:53,827 | INFO     | mean y: 2326536.7322834646
[2025-06-04 20:40:12] 2025-06-04 18:38:53,828 | INFO     | -- intersect: -2669234367.7730536
[2025-06-04 20:40:12] 2025-06-04 18:38:53,828 | INFO     | intersect: -2669234367.7730536
[2025-06-04 20:40:12] 2025-06-04 18:38:53,828 | INFO     | chi2: 0.00012586367967121578
[2025-06-04 20:40:12] 2025-06-04 18:38:53,828 | INFO     | current chi2=0.00012586367967121578 (change=32.82205854783585 %)
[2025-06-04 20:40:12] 2025-06-04 18:38:53,828 | INFO     | sum of square deviations: 563026370.5
[2025-06-04 20:40:12] 2025-06-04 18:38:53,829 | INFO     | sum of deviations: 768005707.5
[2025-06-04 20:40:12] 2025-06-04 18:38:53,829 | INFO     | mean x: 1749058578.5
[2025-06-04 20:40:12] 2025-06-04 18:38:53,829 | INFO     | mean y: 2326963.319672131
[2025-06-04 20:40:12] 2025-06-04 18:38:53,829 | INFO     | -- intersect: -2383506172.4301157
[2025-06-04 20:40:12] 2025-06-04 18:38:53,829 | INFO     | intersect: -2383506172.4301157
[2025-06-04 20:40:12] 2025-06-04 18:38:53,829 | INFO     | chi2: 0.00010002154110487851
[2025-06-04 20:40:12] 2025-06-04 18:38:53,830 | INFO     | current chi2=0.00010002154110487851 (change=20.531847339790747 %)
[2025-06-04 20:40:12] 2025-06-04 18:38:53,830 | INFO     | left removable region: 60
[2025-06-04 20:40:12] 2025-06-04 18:38:53,830 | INFO     | sum of square deviations: 197203697.5
[2025-06-04 20:40:12] 2025-06-04 18:38:53,830 | INFO     | sum of deviations: 165707903.0
[2025-06-04 20:40:12] 2025-06-04 18:38:53,830 | INFO     | mean x: 1749059310.5
[2025-06-04 20:40:12] 2025-06-04 18:38:53,831 | INFO     | mean y: 2328241.1860465114
[2025-06-04 20:40:12] 2025-06-04 18:38:53,831 | INFO     | -- intersect: -1467385330.313194
[2025-06-04 20:40:12] 2025-06-04 18:38:53,831 | INFO     | intersect: -1467385330.313194
[2025-06-04 20:40:12] 2025-06-04 18:38:53,831 | INFO     | chi2: 7.969060922244971e-05
[2025-06-04 20:40:12] 2025-06-04 18:38:53,831 | INFO     | -- intersect: -1467385330.313194
[2025-06-04 20:40:12] 2025-06-04 18:38:53,831 | INFO     | current memory leak: 0.84 B/s (using 86 data points, chi2=0.00)
[2025-06-04 20:40:12] 2025-06-04 18:38:53,832 | INFO     | ..............................
[2025-06-04 20:40:12] 2025-06-04 18:38:53,832 | INFO     | . Timing measurements:
[2025-06-04 20:40:12] 2025-06-04 18:38:53,832 | INFO     | . get job = 0 s
[2025-06-04 20:40:12] 2025-06-04 18:38:53,832 | INFO     | . initial setup = 1 s
[2025-06-04 20:40:12] 2025-06-04 18:38:53,832 | INFO     | . payload setup = 6 s
[2025-06-04 20:40:12] 2025-06-04 18:38:53,833 | INFO     | . stage-in = 0 s
[2025-06-04 20:40:12] 2025-06-04 18:38:53,833 | INFO     | . payload execution = 9266 s
[2025-06-04 20:40:12] 2025-06-04 18:38:53,833 | INFO     | . stage-out = 0 s
[2025-06-04 20:40:12] 2025-06-04 18:38:53,833 | INFO     | . log creation = 0 s
[2025-06-04 20:40:12] 2025-06-04 18:38:53,833 | INFO     | ..............................
[2025-06-04 20:40:12] 2025-06-04 18:38:53,967 | INFO     | 
[2025-06-04 20:40:12] 2025-06-04 18:38:53,967 | INFO     | job summary report
[2025-06-04 20:40:12] 2025-06-04 18:38:53,967 | INFO     | --------------------------------------------------
[2025-06-04 20:40:12] 2025-06-04 18:38:53,967 | INFO     | PanDA job id: 6677384339
[2025-06-04 20:40:12] 2025-06-04 18:38:53,967 | INFO     | task id: 45006595
[2025-06-04 20:40:12] 2025-06-04 18:38:53,968 | INFO     | errors: (none)
[2025-06-04 20:40:12] 2025-06-04 18:38:53,968 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 20:40:12] 2025-06-04 18:38:53,968 | INFO     | pilot state: finished 
[2025-06-04 20:40:12] 2025-06-04 18:38:53,968 | INFO     | transexitcode: 0
[2025-06-04 20:40:12] 2025-06-04 18:38:53,968 | INFO     | exeerrorcode: 0
[2025-06-04 20:40:12] 2025-06-04 18:38:53,968 | INFO     | exeerrordiag: 
[2025-06-04 20:40:12] 2025-06-04 18:38:53,968 | INFO     | exitcode: 0
[2025-06-04 20:40:12] 2025-06-04 18:38:53,968 | INFO     | exitmsg: OK
[2025-06-04 20:40:12] 2025-06-04 18:38:53,968 | INFO     | cpuconsumptiontime: 35446 s
[2025-06-04 20:40:12] 2025-06-04 18:38:53,968 | INFO     | nevents: 400
[2025-06-04 20:40:12] 2025-06-04 18:38:53,968 | INFO     | neventsw: 0
[2025-06-04 20:40:12] 2025-06-04 18:38:53,968 | INFO     | pid: 1522718
[2025-06-04 20:40:12] 2025-06-04 18:38:53,969 | INFO     | pgrp: 1522718
[2025-06-04 20:40:12] 2025-06-04 18:38:53,969 | INFO     | corecount: 4
[2025-06-04 20:40:12] 2025-06-04 18:38:53,969 | INFO     | event service: False
[2025-06-04 20:40:12] 2025-06-04 18:38:53,969 | INFO     | sizes: {0: 2397175, 1: 2397374, 5: 2397580, 11: 2397636, 9276: 2425727, 9277: 2425726, 9278: 2434873, 9281: 2434929, 9287: 2435099}
[2025-06-04 20:40:12] 2025-06-04 18:38:53,969 | INFO     | --------------------------------------------------
[2025-06-04 20:40:12] 2025-06-04 18:38:53,969 | INFO     | 
[2025-06-04 20:40:12] 2025-06-04 18:38:53,969 | INFO     | executing command: ls -lF /scratch/boinc/var/slot48/slots/0
[2025-06-04 20:40:12] 2025-06-04 18:38:53,992 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 20:40:12] 2025-06-04 18:38:53,992 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 20:40:12] 2025-06-04 18:38:53,993 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 20:40:12] 2025-06-04 18:38:53,993 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 20:40:12] 2025-06-04 18:38:53,993 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 20:40:12] 2025-06-04 18:38:53,993 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 20:40:12] 2025-06-04 18:38:53,993 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 20:40:12] 2025-06-04 18:38:53,993 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 20:40:12] 2025-06-04 18:38:53,993 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 20:40:12] 2025-06-04 18:38:53,993 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 20:40:12] 2025-06-04 18:38:53,993 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 20:40:12] 2025-06-04 18:38:53,993 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 20:40:12] 2025-06-04 18:38:53,994 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 20:40:12] 2025-06-04 18:38:53,994 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 20:40:12] 2025-06-04 18:38:53,994 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 20:40:12] 2025-06-04 18:38:53,994 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 20:40:12] 2025-06-04 18:38:53,994 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 20:40:12] 2025-06-04 18:38:53,994 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 20:40:12] 2025-06-04 18:38:53,994 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 20:40:12] 2025-06-04 18:38:53,994 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 20:40:12] 2025-06-04 18:38:53,994 | INFO     | job 6677384339 has completed (purged errors)
[2025-06-04 20:40:12] 2025-06-04 18:38:53,994 | INFO     | overall cleanup function is called
[2025-06-04 20:40:12] 2025-06-04 18:38:55,002 | INFO     | --- collectZombieJob: --- 10, [1522718]
[2025-06-04 20:40:12] 2025-06-04 18:38:55,003 | INFO     | zombie collector waiting for pid 1522718
[2025-06-04 20:40:12] 2025-06-04 18:38:55,003 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 20:40:12] 2025-06-04 18:38:55,003 | INFO     | collected zombie processes
[2025-06-04 20:40:12] 2025-06-04 18:38:55,003 | INFO     | will attempt to kill all subprocesses of pid=1522718
[2025-06-04 20:40:12] 2025-06-04 18:38:55,394 | INFO     | process IDs to be killed: [1522718] (in reverse order)
[2025-06-04 20:40:12] 2025-06-04 18:38:55,508 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 20:40:12] 2025-06-04 18:38:55,508 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 20:40:12] 2025-06-04 18:38:55,520 | INFO     | did not find any defunct processes belonging to 1522718
[2025-06-04 20:40:12] 2025-06-04 18:38:55,531 | INFO     | did not find any defunct processes belonging to 1522718
[2025-06-04 20:40:12] 2025-06-04 18:38:55,531 | INFO     | ready for new job
[2025-06-04 20:40:12] 2025-06-04 18:38:55,531 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 20:40:12] 2025-06-04 18:38:55,533 | INFO     | **************************************
[2025-06-04 20:40:12] 2025-06-04 18:38:55,533 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 20:40:12] 2025-06-04 18:38:55,533 | INFO     | **************************************
[2025-06-04 20:40:12] 2025-06-04 18:38:55,533 | INFO     | 
[2025-06-04 20:40:12] 2025-06-04 18:38:55,537 | INFO     | architecture information:
[2025-06-04 20:40:12] 2025-06-04 18:38:55,538 | INFO     | executing command: cat /etc/os-release
[2025-06-04 20:40:12] 2025-06-04 18:38:55,554 | INFO     | cat /etc/os-release:
[2025-06-04 20:40:12] NAME="CentOS Linux"
[2025-06-04 20:40:12] VERSION="7 (Core)"
[2025-06-04 20:40:12] ID="centos"
[2025-06-04 20:40:12] ID_LIKE="rhel fedora"
[2025-06-04 20:40:12] VERSION_ID="7"
[2025-06-04 20:40:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 20:40:12] ANSI_COLOR="0;31"
[2025-06-04 20:40:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 20:40:12] HOME_URL="https://www.centos.org/"
[2025-06-04 20:40:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 20:40:12] 
[2025-06-04 20:40:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 20:40:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 20:40:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 20:40:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 20:40:12] 
[2025-06-04 20:40:12] 2025-06-04 18:38:55,554 | INFO     | **************************************
[2025-06-04 20:40:12] 2025-06-04 18:38:56,057 | INFO     | executing command: df -mP /scratch/boinc/var/slot48/slots/0
[2025-06-04 20:40:12] 2025-06-04 18:38:56,076 | INFO     | sufficient remaining disk space (641554448384 B)
[2025-06-04 20:40:12] 2025-06-04 18:38:56,076 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 20:40:12] 2025-06-04 18:38:56,077 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 20:40:12] 2025-06-04 18:38:56,077 | INFO     | update_server=False
[2025-06-04 20:40:12] 2025-06-04 18:38:56,077 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 20:40:12] 2025-06-04 18:38:56,077 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 20:40:12] 2025-06-04 18:38:56,091 | INFO     | all job control threads have been joined
[2025-06-04 20:40:12] 2025-06-04 18:38:56,101 | INFO     | all payload control threads have been joined
[2025-06-04 20:40:12] 2025-06-04 18:38:56,185 | INFO     | all data control threads have been joined
[2025-06-04 20:40:12] 2025-06-04 18:38:56,493 | INFO     | PID=1515710 has CPU usage=13.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-04 20:40:12] 2025-06-04 18:38:56,494 | INFO     | .. there are 6 such processes running
[2025-06-04 20:40:12] 2025-06-04 18:38:56,494 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 20:40:12] 2025-06-04 18:38:56,494 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 20:40:12] 2025-06-04 18:38:56,494 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 20:40:12] 2025-06-04 18:38:56,577 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 20:40:12] 2025-06-04 18:38:56,578 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 20:40:12] 2025-06-04 18:38:56,578 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 20:40:12] 2025-06-04 18:38:56,578 | INFO     | will abort loop
[2025-06-04 20:40:12] 2025-06-04 18:38:57,082 | INFO     | [job] retrieve thread has finished
[2025-06-04 20:40:12] 2025-06-04 18:38:57,097 | INFO     | [job] control thread has finished
[2025-06-04 20:40:12] 2025-06-04 18:38:57,107 | INFO     | [payload] control thread has finished
[2025-06-04 20:40:12] 2025-06-04 18:38:57,191 | INFO     | [data] control thread has finished
[2025-06-04 20:40:12] 2025-06-04 18:38:57,267 | INFO     | [payload] validate_post thread has finished
[2025-06-04 20:40:12] 2025-06-04 18:38:57,296 | INFO     | [data] copytool_in thread has finished
[2025-06-04 20:40:12] 2025-06-04 18:38:57,582 | INFO     | [job] job monitor thread has finished
[2025-06-04 20:40:12] 2025-06-04 18:38:57,874 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 20:40:12] 2025-06-04 18:38:57,933 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 20:40:12] 2025-06-04 18:38:58,082 | INFO     | [data] copytool_out thread has finished
[2025-06-04 20:40:12] 2025-06-04 18:38:58,151 | INFO     | [payload] failed_post thread has finished
[2025-06-04 20:40:12] 2025-06-04 18:38:58,324 | INFO     | [job] validate thread has finished
[2025-06-04 20:40:12] 2025-06-04 18:38:58,341 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 20:40:12] 2025-06-04 18:38:58,423 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 20:40:12] 2025-06-04 18:38:58,946 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 20:40:12] 2025-06-04 18:38:59,951 | INFO     | [job] queue monitor thread has finished
[2025-06-04 20:40:12] 2025-06-04 18:39:01,939 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 20:40:12] 2025-06-04 18:39:06,328 | INFO     | job.realtimelogging is not enabled
[2025-06-04 20:40:12] 2025-06-04 18:39:07,333 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 20:40:12] 2025-06-04 18:39:07,674 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23436862162752)>', '<ExcThread(monitor, started 23436418066176)>']
[2025-06-04 20:40:12] 2025-06-04 18:39:08,547 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 20:40:12] 2025-06-04 18:39:08,548 | INFO     | [monitor] control thread has ended
[2025-06-04 20:40:12] 2025-06-04 18:39:12,684 | INFO     | all workflow threads have been joined
[2025-06-04 20:40:12] 2025-06-04 18:39:12,684 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 20:40:12] 2025-06-04 18:39:12,684 | INFO     | traces error code: 0
[2025-06-04 20:40:12] 2025-06-04 18:39:12,684 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 20:40:12] 2025-06-04 18:39:12,829 [wrapper] ==== pilot stdout END ====
[2025-06-04 20:40:12] 2025-06-04 18:39:12,832 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 20:40:12] 2025-06-04 18:39:12,835 [wrapper] pilotpid: 1515710
[2025-06-04 20:40:12] 2025-06-04 18:39:12,838 [wrapper] Pilot exit status: 0
[2025-06-04 20:40:12] 2025-06-04 18:39:12,850 [wrapper] pandaids: 6677384339
[2025-06-04 20:40:12] 2025-06-04 18:39:12,920 [wrapper] cleanup supervisor_pilot 1747525 1515711
[2025-06-04 20:40:12] 2025-06-04 18:39:12,923 [wrapper] Test setup, not cleaning
[2025-06-04 20:40:12] 2025-06-04 18:39:12,927 [wrapper] apfmon messages muted
[2025-06-04 20:40:12] 2025-06-04 18:39:12,930 [wrapper] ==== wrapper stdout END ====
[2025-06-04 20:40:12] 2025-06-04 18:39:12,933 [wrapper] ==== wrapper stderr END ====
[2025-06-04 20:40:12]  *** Error codes and diagnostics ***
[2025-06-04 20:40:12]     "exeErrorCode": 0,
[2025-06-04 20:40:12]     "exeErrorDiag": "",
[2025-06-04 20:40:12]     "pilotErrorCode": 0,
[2025-06-04 20:40:12]     "pilotErrorDiag": "",
[2025-06-04 20:40:12]  *** Listing of results directory ***
[2025-06-04 20:40:12] total 393744
[2025-06-04 20:40:12] -rw-r--r-- 1 boinc boinc    495897 Jun  2 18:40 pilot3.tar.gz
[2025-06-04 20:40:12] -rw-r--r-- 1 boinc boinc      5111 Jun  2 18:45 queuedata.json
[2025-06-04 20:40:12] -rwx------ 1 boinc boinc     37140 Jun  2 18:46 runpilot2-wrapper.sh
[2025-06-04 20:40:12] -rw-r--r-- 1 boinc boinc       100 Jun  4 18:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 20:40:12] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 18:03 run_atlas
[2025-06-04 20:40:12] -rw-r--r-- 1 boinc boinc       105 Jun  4 18:03 job.xml
[2025-06-04 20:40:12] -rw-r--r-- 2 boinc boinc 215785514 Jun  4 18:03 EVNT.45006593._000167.pool.root.1
[2025-06-04 20:40:12] -rw-r--r-- 1 boinc boinc      6635 Jun  4 18:03 init_data.xml
[2025-06-04 20:40:12] -rw-r--r-- 2 boinc boinc     15093 Jun  4 18:03 start_atlas.sh
[2025-06-04 20:40:12] drwxrwx--x 2 boinc boinc      4096 Jun  4 18:03 shared
[2025-06-04 20:40:12] -rw-r--r-- 2 boinc boinc    508878 Jun  4 18:03 input.tar.gz
[2025-06-04 20:40:12] -rw-r--r-- 1 boinc boinc         0 Jun  4 18:03 boinc_lockfile
[2025-06-04 20:40:12] -rw-r--r-- 1 boinc boinc      2521 Jun  4 18:03 pandaJob.out
[2025-06-04 20:40:12] -rw------- 1 boinc boinc    990989 Jun  4 18:03 agis_schedconf.cvmfs.json
[2025-06-04 20:40:12] -rw------- 1 boinc boinc   1598969 Jun  4 18:03 agis_ddmendpoints.agis.ALL.json
[2025-06-04 20:40:12] drwx------ 4 boinc boinc      4096 Jun  4 18:03 pilot3
[2025-06-04 20:40:12] -rw------- 1 boinc boinc 181217708 Jun  4 20:38 HITS.45006595._004159.pool.root.1
[2025-06-04 20:40:12] -rw------- 1 boinc boinc        95 Jun  4 20:38 pilot_heartbeat.json
[2025-06-04 20:40:12] -rw-r--r-- 1 boinc boinc       529 Jun  4 20:38 boinc_task_state.xml
[2025-06-04 20:40:12] -rw------- 1 boinc boinc      1034 Jun  4 20:38 memory_monitor_summary.json
[2025-06-04 20:40:12] -rw------- 1 boinc boinc    285166 Jun  4 20:38 log.45006595._004159.job.log.tgz.1
[2025-06-04 20:40:12] -rw------- 1 boinc boinc      7715 Jun  4 20:38 heartbeat.json
[2025-06-04 20:40:12] -rw------- 1 boinc boinc      5016 Jun  4 20:39 pilotlog.txt
[2025-06-04 20:40:12] -rw------- 1 boinc boinc    891259 Jun  4 20:39 log.45006595._004159.job.log.1
[2025-06-04 20:40:12] -rw------- 1 boinc boinc       357 Jun  4 20:39 output.list
[2025-06-04 20:40:12] -rw-r--r-- 1 boinc boinc       620 Jun  4 20:39 runtime_log
[2025-06-04 20:40:12] -rw------- 1 boinc boinc   1198080 Jun  4 20:39 result.tar.gz
[2025-06-04 20:40:12] -rw-r--r-- 1 boinc boinc      9025 Jun  4 20:39 runtime_log.err
[2025-06-04 20:40:12] -rw------- 1 boinc boinc       662 Jun  4 20:39 P1kMDmwTNg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmzUfKDmNqdvtn.diag
[2025-06-04 20:40:12] -rw-r--r-- 1 boinc boinc        26 Jun  4 20:40 wrapper_checkpoint.txt
[2025-06-04 20:40:12] -rw-r--r-- 1 boinc boinc      8192 Jun  4 20:40 boinc_mmap_file
[2025-06-04 20:40:12] -rw-r--r-- 1 boinc boinc     20755 Jun  4 20:40 stderr.txt
[2025-06-04 20:40:12] HITS file was successfully produced:
[2025-06-04 20:40:12] -rw------- 1 boinc boinc 181217708 Jun  4 20:38 shared/HITS.pool.root.1
[2025-06-04 20:40:12]  *** Contents of shared directory: ***
[2025-06-04 20:40:12] total 389396
[2025-06-04 20:40:12] -rw-r--r-- 2 boinc boinc 215785514 Jun  4 18:03 ATLAS.root_0
[2025-06-04 20:40:12] -rw-r--r-- 2 boinc boinc     15093 Jun  4 18:03 start_atlas.sh
[2025-06-04 20:40:12] -rw-r--r-- 2 boinc boinc    508878 Jun  4 18:03 input.tar.gz
[2025-06-04 20:40:12] -rw------- 1 boinc boinc 181217708 Jun  4 20:38 HITS.pool.root.1
[2025-06-04 20:40:12] -rw------- 1 boinc boinc   1198080 Jun  4 20:39 result.tar.gz
20:40:13 (1512018): run_atlas exited; CPU time 35758.328461
20:40:13 (1512018): called boinc_finish(0)

</stderr_txt>
]]>

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