Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:08:03 (334643): wrapper (7.7.26015): starting
16:08:03 (334643): wrapper: running run_atlas (--nthreads 4)
[2025-06-04 16:08:03] Arguments: --nthreads 4
[2025-06-04 16:08:03] Threads: 4
[2025-06-04 16:08:03] Checking for CVMFS
[2025-06-04 16:08:03] No cvmfs_config command found, will try listing directly
[2025-06-04 16:08:03] CVMFS is ok
[2025-06-04 16:08:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 16:08:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 16:08:03] Further information can be found at the LHC@home message board.
[2025-06-04 16:08:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 16:08:03] Checking for apptainer binary...
[2025-06-04 16:08:03] which: no apptainer in ((null))
[2025-06-04 16:08:03] apptainer is not installed, using version from CVMFS
[2025-06-04 16:08:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 16:08:04] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut02.grid.cesnet.cz
[2025-06-04 16:08:04] apptainer works
[2025-06-04 16:08:04] Set ATHENA_PROC_NUMBER=4
[2025-06-04 16:08:04] Set ATHENA_CORE_NUMBER=4
[2025-06-04 16:08:04] Starting ATLAS job with PandaID=6677392634
[2025-06-04 16:08:04] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 18:54:10]  *** The last 200 lines of the pilot log: ***
[2025-06-04 18:54:10] 2025-06-04 16:49:25,070 | INFO     | monitor loop #701: job 0:6677392634 is in state 'finished'
[2025-06-04 18:54:10] 2025-06-04 16:49:25,071 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 18:54:10] 2025-06-04 16:49:27,574 | INFO     | monitor loop #702: job 0:6677392634 is in state 'finished'
[2025-06-04 18:54:10] 2025-06-04 16:49:27,574 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 18:54:10] 2025-06-04 16:49:30,077 | INFO     | monitor loop #703: job 0:6677392634 is in state 'finished'
[2025-06-04 18:54:10] 2025-06-04 16:49:30,077 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 18:54:10] 2025-06-04 16:49:31,642 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 18:54:10] 2025-06-04 16:49:31,642 | INFO     | using path: /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6677392634/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 18:54:10] 2025-06-04 16:49:31,643 | INFO     | extracted standard info from prmon json
[2025-06-04 18:54:10] 2025-06-04 16:49:31,644 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 18:54:10] 2025-06-04 16:49:31,644 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 18:54:10] 2025-06-04 16:49:31,644 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 18:54:10] 2025-06-04 16:49:31,644 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 18:54:10] 2025-06-04 16:49:31,648 | INFO     | fitting pss+swap vs Time
[2025-06-04 18:54:10] 2025-06-04 16:49:31,649 | INFO     | sum of square deviations: 1223016419.5
[2025-06-04 18:54:10] 2025-06-04 16:49:31,649 | INFO     | sum of deviations: 23028900773.5
[2025-06-04 18:54:10] 2025-06-04 16:49:31,650 | INFO     | mean x: 1749050915.5
[2025-06-04 18:54:10] 2025-06-04 16:49:31,650 | INFO     | mean y: 2303970.5
[2025-06-04 18:54:10] 2025-06-04 16:49:31,650 | INFO     | -- intersect: -32931611992.22746
[2025-06-04 18:54:10] 2025-06-04 16:49:31,650 | INFO     | intersect: -32931611992.22746
[2025-06-04 18:54:10] 2025-06-04 16:49:31,650 | INFO     | chi2: 1.7693602385746172
[2025-06-04 18:54:10] 2025-06-04 16:49:31,651 | INFO     | sum of square deviations: 1110539892.0
[2025-06-04 18:54:10] 2025-06-04 16:49:31,651 | INFO     | sum of deviations: 22221458748.99999
[2025-06-04 18:54:10] 2025-06-04 16:49:31,652 | INFO     | mean x: 1749050763.0
[2025-06-04 18:54:10] 2025-06-04 16:49:31,652 | INFO     | mean y: 2302875.3333333335
[2025-06-04 18:54:10] 2025-06-04 16:49:31,652 | INFO     | -- intersect: -34995502840.511635
[2025-06-04 18:54:10] 2025-06-04 16:49:31,652 | INFO     | intersect: -34995502840.511635
[2025-06-04 18:54:10] 2025-06-04 16:49:31,652 | INFO     | chi2: 1.7714599932299786
[2025-06-04 18:54:10] 2025-06-04 16:49:31,652 | INFO     | current chi2=1.7714599932299786 (change=-0.11867310056955566 %)
[2025-06-04 18:54:10] 2025-06-04 16:49:31,652 | INFO     | right removable region: 152
[2025-06-04 18:54:10] 2025-06-04 16:49:31,653 | INFO     | sum of square deviations: 1110539892.0
[2025-06-04 18:54:10] 2025-06-04 16:49:31,654 | INFO     | sum of deviations: -3891419726.000001
[2025-06-04 18:54:10] 2025-06-04 16:49:31,654 | INFO     | mean x: 1749051068.0
[2025-06-04 18:54:10] 2025-06-04 16:49:31,654 | INFO     | mean y: 2340060.6078431373
[2025-06-04 18:54:10] 2025-06-04 16:49:31,654 | INFO     | -- intersect: 6131153511.459161
[2025-06-04 18:54:10] 2025-06-04 16:49:31,654 | INFO     | intersect: 6131153511.459161
[2025-06-04 18:54:10] 2025-06-04 16:49:31,654 | INFO     | chi2: 0.017185011340226295
[2025-06-04 18:54:10] 2025-06-04 16:49:31,654 | INFO     | current chi2=0.017185011340226295 (change=99.0287443469358 %)
[2025-06-04 18:54:10] 2025-06-04 16:49:31,655 | INFO     | sum of square deviations: 1005179777.0
[2025-06-04 18:54:10] 2025-06-04 16:49:31,655 | INFO     | sum of deviations: -3102715833.9999995
[2025-06-04 18:54:10] 2025-06-04 16:49:31,656 | INFO     | mean x: 1749051220.5
[2025-06-04 18:54:10] 2025-06-04 16:49:31,656 | INFO     | mean y: 2338911.1756756757
[2025-06-04 18:54:10] 2025-06-04 16:49:31,656 | INFO     | -- intersect: 5401183018.961953
[2025-06-04 18:54:10] 2025-06-04 16:49:31,656 | INFO     | intersect: 5401183018.961953
[2025-06-04 18:54:10] 2025-06-04 16:49:31,656 | INFO     | chi2: 0.01671496105005297
[2025-06-04 18:54:10] 2025-06-04 16:49:31,656 | INFO     | current chi2=0.01671496105005297 (change=2.735234099456441 %)
[2025-06-04 18:54:10] 2025-06-04 16:49:31,656 | INFO     | left removable region: 20
[2025-06-04 18:54:10] 2025-06-04 16:49:31,657 | INFO     | sum of square deviations: 713140813.0
[2025-06-04 18:54:10] 2025-06-04 16:49:31,657 | INFO     | sum of deviations: -117928219.49999985
[2025-06-04 18:54:10] 2025-06-04 16:49:31,657 | INFO     | mean x: 1749051342.5
[2025-06-04 18:54:10] 2025-06-04 16:49:31,658 | INFO     | mean y: 2333787.9015151514
[2025-06-04 18:54:10] 2025-06-04 16:49:31,658 | INFO     | -- intersect: 291564900.29209065
[2025-06-04 18:54:10] 2025-06-04 16:49:31,658 | INFO     | intersect: 291564900.29209065
[2025-06-04 18:54:10] 2025-06-04 16:49:31,658 | INFO     | chi2: 0.009306587337474338
[2025-06-04 18:54:10] 2025-06-04 16:49:31,658 | INFO     | -- intersect: 291564900.29209065
[2025-06-04 18:54:10] 2025-06-04 16:49:31,658 | INFO     | current memory leak: -0.17 B/s (using 132 data points, chi2=0.01)
[2025-06-04 18:54:10] 2025-06-04 16:49:31,659 | INFO     | ..............................
[2025-06-04 18:54:10] 2025-06-04 16:49:31,659 | INFO     | . Timing measurements:
[2025-06-04 18:54:10] 2025-06-04 16:49:31,659 | INFO     | . get job = 0 s
[2025-06-04 18:54:10] 2025-06-04 16:49:31,659 | INFO     | . initial setup = 1 s
[2025-06-04 18:54:10] 2025-06-04 16:49:31,659 | INFO     | . payload setup = 8 s
[2025-06-04 18:54:10] 2025-06-04 16:49:31,659 | INFO     | . stage-in = 0 s
[2025-06-04 18:54:10] 2025-06-04 16:49:31,659 | INFO     | . payload execution = 9635 s
[2025-06-04 18:54:10] 2025-06-04 16:49:31,659 | INFO     | . stage-out = 0 s
[2025-06-04 18:54:10] 2025-06-04 16:49:31,660 | INFO     | . log creation = 0 s
[2025-06-04 18:54:10] 2025-06-04 16:49:31,660 | INFO     | ..............................
[2025-06-04 18:54:10] 2025-06-04 16:49:31,765 | INFO     | 
[2025-06-04 18:54:10] 2025-06-04 16:49:31,766 | INFO     | job summary report
[2025-06-04 18:54:10] 2025-06-04 16:49:31,766 | INFO     | --------------------------------------------------
[2025-06-04 18:54:10] 2025-06-04 16:49:31,766 | INFO     | PanDA job id: 6677392634
[2025-06-04 18:54:10] 2025-06-04 16:49:31,766 | INFO     | task id: 45006595
[2025-06-04 18:54:10] 2025-06-04 16:49:31,766 | INFO     | errors: (none)
[2025-06-04 18:54:10] 2025-06-04 16:49:31,766 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 18:54:10] 2025-06-04 16:49:31,766 | INFO     | pilot state: finished 
[2025-06-04 18:54:10] 2025-06-04 16:49:31,766 | INFO     | transexitcode: 0
[2025-06-04 18:54:10] 2025-06-04 16:49:31,766 | INFO     | exeerrorcode: 0
[2025-06-04 18:54:10] 2025-06-04 16:49:31,766 | INFO     | exeerrordiag: 
[2025-06-04 18:54:10] 2025-06-04 16:49:31,767 | INFO     | exitcode: 0
[2025-06-04 18:54:10] 2025-06-04 16:49:31,767 | INFO     | exitmsg: OK
[2025-06-04 18:54:10] 2025-06-04 16:49:31,767 | INFO     | cpuconsumptiontime: 36966 s
[2025-06-04 18:54:10] 2025-06-04 16:49:31,767 | INFO     | nevents: 400
[2025-06-04 18:54:10] 2025-06-04 16:49:31,767 | INFO     | neventsw: 0
[2025-06-04 18:54:10] 2025-06-04 16:49:31,767 | INFO     | pid: 345268
[2025-06-04 18:54:10] 2025-06-04 16:49:31,767 | INFO     | pgrp: 345268
[2025-06-04 18:54:10] 2025-06-04 16:49:31,767 | INFO     | corecount: 4
[2025-06-04 18:54:10] 2025-06-04 16:49:31,767 | INFO     | event service: False
[2025-06-04 18:54:10] 2025-06-04 16:49:31,767 | INFO     | sizes: {0: 2397175, 1: 2397374, 6: 2397580, 11: 2397608, 9647: 2425781, 9649: 2434744, 9651: 2434928, 9659: 2435098}
[2025-06-04 18:54:10] 2025-06-04 16:49:31,767 | INFO     | --------------------------------------------------
[2025-06-04 18:54:10] 2025-06-04 16:49:31,767 | INFO     | 
[2025-06-04 18:54:10] 2025-06-04 16:49:31,767 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/0
[2025-06-04 18:54:10] 2025-06-04 16:49:31,789 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 18:54:10] 2025-06-04 16:49:31,789 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 18:54:10] 2025-06-04 16:49:31,789 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 18:54:10] 2025-06-04 16:49:31,789 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 18:54:10] 2025-06-04 16:49:31,789 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 18:54:10] 2025-06-04 16:49:31,790 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 18:54:10] 2025-06-04 16:49:31,790 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 18:54:10] 2025-06-04 16:49:31,790 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 18:54:10] 2025-06-04 16:49:31,790 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 18:54:10] 2025-06-04 16:49:31,790 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 18:54:10] 2025-06-04 16:49:31,790 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 18:54:10] 2025-06-04 16:49:31,790 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 18:54:10] 2025-06-04 16:49:31,790 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 18:54:10] 2025-06-04 16:49:31,790 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 18:54:10] 2025-06-04 16:49:31,790 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 18:54:10] 2025-06-04 16:49:31,790 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 18:54:10] 2025-06-04 16:49:31,790 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 18:54:10] 2025-06-04 16:49:31,791 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 18:54:10] 2025-06-04 16:49:31,791 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 18:54:10] 2025-06-04 16:49:31,791 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 18:54:10] 2025-06-04 16:49:31,791 | INFO     | job 6677392634 has completed (purged errors)
[2025-06-04 18:54:10] 2025-06-04 16:49:31,791 | INFO     | overall cleanup function is called
[2025-06-04 18:54:10] 2025-06-04 16:49:32,799 | INFO     | --- collectZombieJob: --- 10, [345268]
[2025-06-04 18:54:10] 2025-06-04 16:49:32,799 | INFO     | zombie collector waiting for pid 345268
[2025-06-04 18:54:10] 2025-06-04 16:49:32,799 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 18:54:10] 2025-06-04 16:49:32,799 | INFO     | collected zombie processes
[2025-06-04 18:54:10] 2025-06-04 16:49:32,799 | INFO     | will attempt to kill all subprocesses of pid=345268
[2025-06-04 18:54:10] 2025-06-04 16:49:33,138 | INFO     | process IDs to be killed: [345268] (in reverse order)
[2025-06-04 18:54:10] 2025-06-04 16:49:33,244 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 18:54:10] 2025-06-04 16:49:33,245 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 18:54:10] 2025-06-04 16:49:33,257 | INFO     | did not find any defunct processes belonging to 345268
[2025-06-04 18:54:10] 2025-06-04 16:49:33,268 | INFO     | did not find any defunct processes belonging to 345268
[2025-06-04 18:54:10] 2025-06-04 16:49:33,268 | INFO     | ready for new job
[2025-06-04 18:54:10] 2025-06-04 16:49:33,269 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 18:54:10] 2025-06-04 16:49:33,270 | INFO     | **************************************
[2025-06-04 18:54:10] 2025-06-04 16:49:33,271 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 18:54:10] 2025-06-04 16:49:33,271 | INFO     | **************************************
[2025-06-04 18:54:10] 2025-06-04 16:49:33,271 | INFO     | 
[2025-06-04 18:54:10] 2025-06-04 16:49:33,275 | INFO     | architecture information:
[2025-06-04 18:54:10] 2025-06-04 16:49:33,275 | INFO     | executing command: cat /etc/os-release
[2025-06-04 18:54:10] 2025-06-04 16:49:33,290 | INFO     | cat /etc/os-release:
[2025-06-04 18:54:10] NAME="CentOS Linux"
[2025-06-04 18:54:10] VERSION="7 (Core)"
[2025-06-04 18:54:10] ID="centos"
[2025-06-04 18:54:10] ID_LIKE="rhel fedora"
[2025-06-04 18:54:10] VERSION_ID="7"
[2025-06-04 18:54:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 18:54:10] ANSI_COLOR="0;31"
[2025-06-04 18:54:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 18:54:10] HOME_URL="https://www.centos.org/"
[2025-06-04 18:54:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 18:54:10] 
[2025-06-04 18:54:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 18:54:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 18:54:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 18:54:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 18:54:10] 
[2025-06-04 18:54:10] 2025-06-04 16:49:33,291 | INFO     | **************************************
[2025-06-04 18:54:10] 2025-06-04 16:49:33,793 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2025-06-04 18:54:10] 2025-06-04 16:49:33,811 | INFO     | sufficient remaining disk space (650370875392 B)
[2025-06-04 18:54:10] 2025-06-04 16:49:33,812 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 18:54:10] 2025-06-04 16:49:33,812 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 18:54:10] 2025-06-04 16:49:33,812 | INFO     | update_server=False
[2025-06-04 18:54:10] 2025-06-04 16:49:33,812 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 18:54:10] 2025-06-04 16:49:33,813 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:54:10] 2025-06-04 16:49:33,813 | INFO     | aborting loop
[2025-06-04 18:54:10] 2025-06-04 16:49:34,074 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 18:54:10] 2025-06-04 16:49:34,351 | INFO     | all payload control threads have been joined
[2025-06-04 18:54:10] 2025-06-04 16:49:34,718 | INFO     | all data control threads have been joined
[2025-06-04 18:54:10] 2025-06-04 16:49:34,817 | INFO     | [job] retrieve thread has finished
[2025-06-04 18:54:10] 2025-06-04 16:49:34,818 | INFO     | [job] job monitor thread has finished
[2025-06-04 18:54:10] 2025-06-04 16:49:34,918 | INFO     | PID=338307 has CPU usage=13.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 18:54:10] 2025-06-04 16:49:34,919 | INFO     | .. there are 6 such processes running
[2025-06-04 18:54:10] 2025-06-04 16:49:34,919 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 18:54:10] 2025-06-04 16:49:34,919 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 18:54:10] 2025-06-04 16:49:34,919 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 18:54:10] 2025-06-04 16:49:35,287 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 18:54:10] 2025-06-04 16:49:35,337 | INFO     | [data] copytool_in thread has finished
[2025-06-04 18:54:10] 2025-06-04 16:49:35,356 | INFO     | [payload] control thread has finished
[2025-06-04 18:54:10] 2025-06-04 16:49:35,428 | INFO     | all job control threads have been joined
[2025-06-04 18:54:10] 2025-06-04 16:49:35,500 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 18:54:10] 2025-06-04 16:49:35,723 | INFO     | [data] control thread has finished
[2025-06-04 18:54:10] 2025-06-04 16:49:35,728 | INFO     | [payload] validate_post thread has finished
[2025-06-04 18:54:10] 2025-06-04 16:49:35,838 | INFO     | [job] validate thread has finished
[2025-06-04 18:54:10] 2025-06-04 16:49:35,998 | INFO     | [payload] failed_post thread has finished
[2025-06-04 18:54:10] 2025-06-04 16:49:36,089 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 18:54:10] 2025-06-04 16:49:36,110 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 18:54:10] 2025-06-04 16:49:36,227 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 18:54:10] 2025-06-04 16:49:36,434 | INFO     | [job] control thread has finished
[2025-06-04 18:54:10] 2025-06-04 16:49:36,776 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:54:10] 2025-06-04 16:49:37,292 | INFO     | [data] copytool_out thread has finished
[2025-06-04 18:54:10] 2025-06-04 16:49:37,781 | INFO     | [job] queue monitor thread has finished
[2025-06-04 18:54:10] 2025-06-04 16:49:38,080 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 18:54:10] 2025-06-04 16:49:39,276 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22397381887808)>', '<ExcThread(monitor, started 22397138720512)>']
[2025-06-04 18:54:10] 2025-06-04 16:49:39,944 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 18:54:10] 2025-06-04 16:49:39,945 | INFO     | [monitor] control thread has ended
[2025-06-04 18:54:10] 2025-06-04 16:49:44,298 | INFO     | all workflow threads have been joined
[2025-06-04 18:54:10] 2025-06-04 16:49:44,298 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 18:54:10] 2025-06-04 16:49:44,299 | INFO     | traces error code: 0
[2025-06-04 18:54:10] 2025-06-04 16:49:44,299 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 18:54:10] 2025-06-04 16:49:44,507 [wrapper] ==== pilot stdout END ====
[2025-06-04 18:54:10] 2025-06-04 16:49:44,510 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 18:54:10] 2025-06-04 16:49:44,514 [wrapper] pilotpid: 338307
[2025-06-04 18:54:10] 2025-06-04 16:49:44,517 [wrapper] Pilot exit status: 0
[2025-06-04 18:54:10] 2025-06-04 16:49:44,527 [wrapper] pandaids: 6677392634
[2025-06-04 18:54:10] 2025-06-04 16:49:44,602 [wrapper] cleanup supervisor_pilot  538266 338308
[2025-06-04 18:54:10] 2025-06-04 16:49:44,606 [wrapper] Test setup, not cleaning
[2025-06-04 18:54:10] 2025-06-04 16:49:44,609 [wrapper] apfmon messages muted
[2025-06-04 18:54:10] 2025-06-04 16:49:44,612 [wrapper] ==== wrapper stdout END ====
[2025-06-04 18:54:10] 2025-06-04 16:49:44,615 [wrapper] ==== wrapper stderr END ====
[2025-06-04 18:54:10]  *** Error codes and diagnostics ***
[2025-06-04 18:54:10]     "exeErrorCode": 0,
[2025-06-04 18:54:10]     "exeErrorDiag": "",
[2025-06-04 18:54:10]     "pilotErrorCode": 0,
[2025-06-04 18:54:10]     "pilotErrorDiag": "",
[2025-06-04 18:54:10]  *** Listing of results directory ***
[2025-06-04 18:54:10] total 389548
[2025-06-04 18:54:10] -rw-r--r-- 1 boinc boinc    495897 Jun  2 20:47 pilot3.tar.gz
[2025-06-04 18:54:10] -rwx------ 1 boinc boinc     37140 Jun  2 20:50 runpilot2-wrapper.sh
[2025-06-04 18:54:10] -rw-r--r-- 1 boinc boinc      5111 Jun  2 20:50 queuedata.json
[2025-06-04 18:54:10] -rw-r--r-- 1 boinc boinc       100 Jun  4 16:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 18:54:10] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 16:07 run_atlas
[2025-06-04 18:54:10] -rw-r--r-- 1 boinc boinc       105 Jun  4 16:07 job.xml
[2025-06-04 18:54:10] -rw-r--r-- 2 boinc boinc 215140877 Jun  4 16:08 EVNT.45006593._000324.pool.root.1
[2025-06-04 18:54:10] -rw-r--r-- 1 boinc boinc      6635 Jun  4 16:08 init_data.xml
[2025-06-04 18:54:10] -rw-r--r-- 2 boinc boinc     15093 Jun  4 16:08 start_atlas.sh
[2025-06-04 18:54:10] drwxrwx--x 2 boinc boinc      4096 Jun  4 16:08 shared
[2025-06-04 18:54:10] -rw-r--r-- 2 boinc boinc    508872 Jun  4 16:08 input.tar.gz
[2025-06-04 18:54:10] -rw-r--r-- 1 boinc boinc         0 Jun  4 16:08 boinc_lockfile
[2025-06-04 18:54:10] -rw-r--r-- 1 boinc boinc      2521 Jun  4 16:08 pandaJob.out
[2025-06-04 18:54:10] -rw------- 1 boinc boinc    986819 Jun  4 16:08 agis_schedconf.cvmfs.json
[2025-06-04 18:54:10] -rw------- 1 boinc boinc   1598969 Jun  4 16:08 agis_ddmendpoints.agis.ALL.json
[2025-06-04 18:54:10] drwx------ 4 boinc boinc      4096 Jun  4 16:08 pilot3
[2025-06-04 18:54:10] -rw------- 1 boinc boinc 177547724 Jun  4 18:48 HITS.45006595._008082.pool.root.1
[2025-06-04 18:54:10] -rw------- 1 boinc boinc        95 Jun  4 18:48 pilot_heartbeat.json
[2025-06-04 18:54:10] -rw-r--r-- 1 boinc boinc       528 Jun  4 18:49 boinc_task_state.xml
[2025-06-04 18:54:10] -rw------- 1 boinc boinc      1034 Jun  4 18:49 memory_monitor_summary.json
[2025-06-04 18:54:10] -rw------- 1 boinc boinc    282198 Jun  4 18:49 log.45006595._008082.job.log.tgz.1
[2025-06-04 18:54:10] -rw------- 1 boinc boinc      7712 Jun  4 18:49 heartbeat.json
[2025-06-04 18:54:10] -rw------- 1 boinc boinc      4757 Jun  4 18:49 pilotlog.txt
[2025-06-04 18:54:10] -rw------- 1 boinc boinc    907606 Jun  4 18:49 log.45006595._008082.job.log.1
[2025-06-04 18:54:10] -rw------- 1 boinc boinc       357 Jun  4 18:49 output.list
[2025-06-04 18:54:10] -rw-r--r-- 1 boinc boinc       620 Jun  4 18:49 runtime_log
[2025-06-04 18:54:10] -rw------- 1 boinc boinc   1208320 Jun  4 18:49 result.tar.gz
[2025-06-04 18:54:10] -rw------- 1 boinc boinc       664 Jun  4 18:49 yPgNDmrPPg7n9Rq4apOajLDm4fhM0noT9bVof3QYDm7GWKDmYfnxyn.diag
[2025-06-04 18:54:10] -rw-r--r-- 1 boinc boinc      9025 Jun  4 18:49 runtime_log.err
[2025-06-04 18:54:10] -rw-r--r-- 1 boinc boinc        26 Jun  4 18:53 wrapper_checkpoint.txt
[2025-06-04 18:54:10] -rw-r--r-- 1 boinc boinc      8192 Jun  4 18:54 boinc_mmap_file
[2025-06-04 18:54:10] -rw-r--r-- 1 boinc boinc     20942 Jun  4 18:54 stderr.txt
[2025-06-04 18:54:10] HITS file was successfully produced:
[2025-06-04 18:54:10] -rw------- 1 boinc boinc 177547724 Jun  4 18:48 shared/HITS.pool.root.1
[2025-06-04 18:54:10]  *** Contents of shared directory: ***
[2025-06-04 18:54:10] total 385192
[2025-06-04 18:54:10] -rw-r--r-- 2 boinc boinc 215140877 Jun  4 16:08 ATLAS.root_0
[2025-06-04 18:54:10] -rw-r--r-- 2 boinc boinc     15093 Jun  4 16:08 start_atlas.sh
[2025-06-04 18:54:10] -rw-r--r-- 2 boinc boinc    508872 Jun  4 16:08 input.tar.gz
[2025-06-04 18:54:10] -rw------- 1 boinc boinc 177547724 Jun  4 18:48 HITS.pool.root.1
[2025-06-04 18:54:10] -rw------- 1 boinc boinc   1208320 Jun  4 18:49 result.tar.gz
18:54:12 (334643): run_atlas exited; CPU time 37295.089717
18:54:12 (334643): called boinc_finish(0)

</stderr_txt>
]]>

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