Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:56:37 (901): wrapper (7.7.26015): starting
06:56:37 (901): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 06:56:37] Arguments: --nthreads 8
[2025-06-03 06:56:37] Threads: 8
[2025-06-03 06:56:37] Checking for CVMFS
[2025-06-03 06:56:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 06:56:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 06:56:38] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 06:56:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 06:56:40] 2.11.2.0 4277 31304 96252 146729 2 60 13776235 25165825 4632 130560 0 15377139 99.795 16752990 2084 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 06:56:40] CVMFS is ok
[2025-06-03 06:56:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 06:56:40] Checking for apptainer binary...
[2025-06-03 06:56:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 06:56:40] Running /usr/bin/apptainer --version
[2025-06-03 06:56:40] apptainer version 1.3.2-1.el7
[2025-06-03 06:56:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 07:21:52] cg-vwn279.simple-grid.lan
[2025-06-03 07:21:52] apptainer works
[2025-06-03 07:21:52] Set ATHENA_PROC_NUMBER=8
[2025-06-03 07:21:52] Set ATHENA_CORE_NUMBER=8
[2025-06-03 07:21:53] Starting ATLAS job with PandaID=6677392620
[2025-06-03 07:21:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 12:22:32]  *** The last 200 lines of the pilot log: ***
[2025-06-03 12:22:32] 2025-06-03 09:08:19,158 | INFO     | extracted standard info from prmon json
[2025-06-03 12:22:32] 2025-06-03 09:08:19,159 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 12:22:32] 2025-06-03 09:08:19,159 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 12:22:32] 2025-06-03 09:08:19,159 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 12:22:32] 2025-06-03 09:08:19,159 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 12:22:32] 2025-06-03 09:08:19,165 | INFO     | fitting pss+swap vs Time
[2025-06-03 12:22:32] 2025-06-03 09:08:19,165 | INFO     | sum of square deviations: 3256879670.0
[2025-06-03 12:22:32] 2025-06-03 09:08:19,173 | INFO     | sum of deviations: -41410359106.0
[2025-06-03 12:22:32] 2025-06-03 09:08:19,174 | INFO     | mean x: 1748934895.0
[2025-06-03 12:22:32] 2025-06-03 09:08:19,174 | INFO     | mean y: 2518588.593607306
[2025-06-03 12:22:32] 2025-06-03 09:08:19,174 | INFO     | -- intersect: 22239760793.788254
[2025-06-03 12:22:32] 2025-06-03 09:08:19,174 | INFO     | intersect: 22239760793.788254
[2025-06-03 12:22:32] 2025-06-03 09:08:19,174 | INFO     | chi2: 2.811961339411629
[2025-06-03 12:22:32] 2025-06-03 09:08:19,175 | INFO     | sum of square deviations: 3038856977.5
[2025-06-03 12:22:32] 2025-06-03 09:08:19,176 | INFO     | sum of deviations: -24698825976.499992
[2025-06-03 12:22:32] 2025-06-03 09:08:19,176 | INFO     | mean x: 1748934742.5
[2025-06-03 12:22:32] 2025-06-03 09:08:19,176 | INFO     | mean y: 2530079.7990654204
[2025-06-03 12:22:32] 2025-06-03 09:08:19,177 | INFO     | -- intersect: 14217294107.555067
[2025-06-03 12:22:32] 2025-06-03 09:08:19,177 | INFO     | intersect: 14217294107.555067
[2025-06-03 12:22:32] 2025-06-03 09:08:19,177 | INFO     | chi2: 1.944926551894545
[2025-06-03 12:22:32] 2025-06-03 09:08:19,177 | INFO     | current chi2=1.944926551894545 (change=30.833808963337354 %)
[2025-06-03 12:22:32] 2025-06-03 09:08:19,177 | INFO     | sum of square deviations: 2830787960.0
[2025-06-03 12:22:32] 2025-06-03 09:08:19,179 | INFO     | sum of deviations: -23558567708.00001
[2025-06-03 12:22:32] 2025-06-03 09:08:19,179 | INFO     | mean x: 1748934590.0
[2025-06-03 12:22:32] 2025-06-03 09:08:19,179 | INFO     | mean y: 2530915.727272727
[2025-06-03 12:22:32] 2025-06-03 09:08:19,179 | INFO     | -- intersect: 14557628131.619854
[2025-06-03 12:22:32] 2025-06-03 09:08:19,179 | INFO     | intersect: 14557628131.619854
[2025-06-03 12:22:32] 2025-06-03 09:08:19,179 | INFO     | chi2: 1.9435348049908092
[2025-06-03 12:22:32] 2025-06-03 09:08:19,179 | INFO     | current chi2=1.9435348049908092 (change=0.07155781293541372 %)
[2025-06-03 12:22:32] 2025-06-03 09:08:19,180 | INFO     | right removable region: 208
[2025-06-03 12:22:32] 2025-06-03 09:08:19,180 | INFO     | sum of square deviations: 3038856977.5
[2025-06-03 12:22:32] 2025-06-03 09:08:19,181 | INFO     | sum of deviations: -80348738443.5
[2025-06-03 12:22:32] 2025-06-03 09:08:19,182 | INFO     | mean x: 1748935047.5
[2025-06-03 12:22:32] 2025-06-03 09:08:19,182 | INFO     | mean y: 2545596.051401869
[2025-06-03 12:22:32] 2025-06-03 09:08:19,182 | INFO     | -- intersect: 46245170940.61576
[2025-06-03 12:22:32] 2025-06-03 09:08:19,182 | INFO     | intersect: 46245170940.61576
[2025-06-03 12:22:32] 2025-06-03 09:08:19,182 | INFO     | chi2: 1.1236203625099463
[2025-06-03 12:22:32] 2025-06-03 09:08:19,182 | INFO     | current chi2=1.1236203625099463 (change=60.041400756062636 %)
[2025-06-03 12:22:32] 2025-06-03 09:08:19,183 | INFO     | sum of square deviations: 2830787960.0
[2025-06-03 12:22:32] 2025-06-03 09:08:19,184 | INFO     | sum of deviations: -77453217619.0
[2025-06-03 12:22:32] 2025-06-03 09:08:19,184 | INFO     | mean x: 1748935200.0
[2025-06-03 12:22:32] 2025-06-03 09:08:19,185 | INFO     | mean y: 2543446.4354066984
[2025-06-03 12:22:32] 2025-06-03 09:08:19,185 | INFO     | -- intersect: 47855176904.41058
[2025-06-03 12:22:32] 2025-06-03 09:08:19,185 | INFO     | intersect: 47855176904.41058
[2025-06-03 12:22:32] 2025-06-03 09:08:19,185 | INFO     | chi2: 1.1132690474770468
[2025-06-03 12:22:32] 2025-06-03 09:08:19,185 | INFO     | current chi2=1.1132690474770468 (change=0.9212466575255673 %)
[2025-06-03 12:22:32] 2025-06-03 09:08:19,185 | INFO     | left removable region: 20
[2025-06-03 12:22:32] 2025-06-03 09:08:19,186 | INFO     | sum of square deviations: 2060343747.0
[2025-06-03 12:22:32] 2025-06-03 09:08:19,187 | INFO     | sum of deviations: -47718714396.5
[2025-06-03 12:22:32] 2025-06-03 09:08:19,187 | INFO     | mean x: 1748935169.5
[2025-06-03 12:22:32] 2025-06-03 09:08:19,187 | INFO     | mean y: 2548512.8776595746
[2025-06-03 12:22:32] 2025-06-03 09:08:19,188 | INFO     | -- intersect: 40508865952.81154
[2025-06-03 12:22:32] 2025-06-03 09:08:19,188 | INFO     | intersect: 40508865952.81154
[2025-06-03 12:22:32] 2025-06-03 09:08:19,188 | INFO     | chi2: 0.20359328394438006
[2025-06-03 12:22:32] 2025-06-03 09:08:19,188 | INFO     | -- intersect: 40508865952.81154
[2025-06-03 12:22:32] 2025-06-03 09:08:19,188 | INFO     | current memory leak: -23.16 B/s (using 188 data points, chi2=0.20)
[2025-06-03 12:22:32] 2025-06-03 09:08:19,189 | INFO     | ..............................
[2025-06-03 12:22:32] 2025-06-03 09:08:19,189 | INFO     | . Timing measurements:
[2025-06-03 12:22:32] 2025-06-03 09:08:19,190 | INFO     | . get job = 0 s
[2025-06-03 12:22:32] 2025-06-03 09:08:19,190 | INFO     | . initial setup = 2 s
[2025-06-03 12:22:32] 2025-06-03 09:08:19,190 | INFO     | . payload setup = 21 s
[2025-06-03 12:22:32] 2025-06-03 09:08:19,190 | INFO     | . stage-in = 0 s
[2025-06-03 12:22:32] 2025-06-03 09:08:19,190 | INFO     | . payload execution = 13400 s
[2025-06-03 12:22:32] 2025-06-03 09:08:19,190 | INFO     | . stage-out = 5 s
[2025-06-03 12:22:32] 2025-06-03 09:08:19,190 | INFO     | . log creation = 1 s
[2025-06-03 12:22:32] 2025-06-03 09:08:19,190 | INFO     | ..............................
[2025-06-03 12:22:32] 2025-06-03 09:08:19,327 | INFO     | 
[2025-06-03 12:22:32] 2025-06-03 09:08:19,327 | INFO     | job summary report
[2025-06-03 12:22:32] 2025-06-03 09:08:19,327 | INFO     | --------------------------------------------------
[2025-06-03 12:22:32] 2025-06-03 09:08:19,327 | INFO     | PanDA job id: 6677392620
[2025-06-03 12:22:32] 2025-06-03 09:08:19,327 | INFO     | task id: 45006595
[2025-06-03 12:22:32] 2025-06-03 09:08:19,328 | INFO     | errors: (none)
[2025-06-03 12:22:32] 2025-06-03 09:08:19,328 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 12:22:32] 2025-06-03 09:08:19,328 | INFO     | pilot state: finished 
[2025-06-03 12:22:32] 2025-06-03 09:08:19,328 | INFO     | transexitcode: 0
[2025-06-03 12:22:32] 2025-06-03 09:08:19,328 | INFO     | exeerrorcode: 0
[2025-06-03 12:22:32] 2025-06-03 09:08:19,328 | INFO     | exeerrordiag: 
[2025-06-03 12:22:32] 2025-06-03 09:08:19,328 | INFO     | exitcode: 0
[2025-06-03 12:22:32] 2025-06-03 09:08:19,328 | INFO     | exitmsg: OK
[2025-06-03 12:22:32] 2025-06-03 09:08:19,328 | INFO     | cpuconsumptiontime: 49667 s
[2025-06-03 12:22:32] 2025-06-03 09:08:19,329 | INFO     | nevents: 400
[2025-06-03 12:22:32] 2025-06-03 09:08:19,329 | INFO     | neventsw: 0
[2025-06-03 12:22:32] 2025-06-03 09:08:19,329 | INFO     | pid: 31142
[2025-06-03 12:22:32] 2025-06-03 09:08:19,329 | INFO     | pgrp: 31142
[2025-06-03 12:22:32] 2025-06-03 09:08:19,329 | INFO     | corecount: 8
[2025-06-03 12:22:32] 2025-06-03 09:08:19,329 | INFO     | event service: False
[2025-06-03 12:22:32] 2025-06-03 09:08:19,329 | INFO     | sizes: {0: 2405178, 1: 2405178, 12: 2405206, 16: 2405440, 22: 2405468, 13426: 2435193, 13432: 2444136, 13433: 2444192, 13519: 2444362}
[2025-06-03 12:22:32] 2025-06-03 09:08:19,329 | INFO     | --------------------------------------------------
[2025-06-03 12:22:32] 2025-06-03 09:08:19,329 | INFO     | 
[2025-06-03 12:22:32] 2025-06-03 09:08:19,330 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-06-03 12:22:32] 2025-06-03 09:08:19,598 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 12:22:32] 2025-06-03 09:08:19,599 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 12:22:32] 2025-06-03 09:08:19,599 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 12:22:32] 2025-06-03 09:08:19,599 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 12:22:32] 2025-06-03 09:08:19,599 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 12:22:32] 2025-06-03 09:08:19,599 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 12:22:32] 2025-06-03 09:08:19,599 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 12:22:32] 2025-06-03 09:08:19,599 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 12:22:32] 2025-06-03 09:08:19,599 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 12:22:32] 2025-06-03 09:08:19,600 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 12:22:32] 2025-06-03 09:08:19,600 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 12:22:32] 2025-06-03 09:08:19,600 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 12:22:32] 2025-06-03 09:08:19,600 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 12:22:32] 2025-06-03 09:08:19,600 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 12:22:32] 2025-06-03 09:08:19,600 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 12:22:32] 2025-06-03 09:08:19,600 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 12:22:32] 2025-06-03 09:08:19,600 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 12:22:32] 2025-06-03 09:08:19,600 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 12:22:32] 2025-06-03 09:08:19,601 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 12:22:32] 2025-06-03 09:08:19,601 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 12:22:32] 2025-06-03 09:08:19,601 | INFO     | job 6677392620 has completed (purged errors)
[2025-06-03 12:22:32] 2025-06-03 09:08:19,601 | INFO     | overall cleanup function is called
[2025-06-03 12:22:32] 2025-06-03 09:08:20,611 | INFO     | --- collectZombieJob: --- 10, [31142]
[2025-06-03 12:22:32] 2025-06-03 09:08:20,611 | INFO     | zombie collector waiting for pid 31142
[2025-06-03 12:22:32] 2025-06-03 09:08:20,611 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 12:22:32] 2025-06-03 09:08:20,611 | INFO     | collected zombie processes
[2025-06-03 12:22:32] 2025-06-03 09:08:20,611 | INFO     | will attempt to kill all subprocesses of pid=31142
[2025-06-03 12:22:32] 2025-06-03 09:08:20,717 | INFO     | process IDs to be killed: [31142] (in reverse order)
[2025-06-03 12:22:32] 2025-06-03 09:08:21,078 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 12:22:32] 2025-06-03 09:08:21,079 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 12:22:32] 2025-06-03 09:08:21,082 | INFO     | did not find any defunct processes belonging to 31142
[2025-06-03 12:22:32] 2025-06-03 09:08:21,085 | INFO     | did not find any defunct processes belonging to 31142
[2025-06-03 12:22:32] 2025-06-03 09:08:21,085 | INFO     | ready for new job
[2025-06-03 12:22:32] 2025-06-03 09:08:21,086 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 12:22:32] 2025-06-03 09:08:21,087 | INFO     | **************************************
[2025-06-03 12:22:32] 2025-06-03 09:08:21,088 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 12:22:32] 2025-06-03 09:08:21,088 | INFO     | **************************************
[2025-06-03 12:22:32] 2025-06-03 09:08:21,088 | INFO     | 
[2025-06-03 12:22:32] 2025-06-03 09:08:21,088 | INFO     | pilot is running in a VM
[2025-06-03 12:22:32] 2025-06-03 09:08:21,089 | INFO     | architecture information:
[2025-06-03 12:22:32] 2025-06-03 09:08:21,103 | INFO     | executing command: cat /etc/os-release
[2025-06-03 12:22:32] 2025-06-03 09:08:21,346 | INFO     | cat /etc/os-release:
[2025-06-03 12:22:32] NAME="CentOS Linux"
[2025-06-03 12:22:32] VERSION="7 (Core)"
[2025-06-03 12:22:32] ID="centos"
[2025-06-03 12:22:32] ID_LIKE="rhel fedora"
[2025-06-03 12:22:32] VERSION_ID="7"
[2025-06-03 12:22:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 12:22:32] ANSI_COLOR="0;31"
[2025-06-03 12:22:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 12:22:32] HOME_URL="https://www.centos.org/"
[2025-06-03 12:22:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 12:22:32] 
[2025-06-03 12:22:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 12:22:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 12:22:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 12:22:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 12:22:32] 
[2025-06-03 12:22:32] 2025-06-03 09:08:21,347 | INFO     | **************************************
[2025-06-03 12:22:32] 2025-06-03 09:08:21,625 | INFO     | 13556s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-03 12:22:32] 2025-06-03 09:08:21,850 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-06-03 12:22:32] 2025-06-03 09:08:22,120 | INFO     | sufficient remaining disk space (496920166400 B)
[2025-06-03 12:22:32] 2025-06-03 09:08:22,120 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 12:22:32] 2025-06-03 09:08:22,120 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 12:22:32] 2025-06-03 09:08:22,120 | INFO     | update_server=False
[2025-06-03 12:22:32] 2025-06-03 09:08:22,121 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 12:22:32] 2025-06-03 09:08:22,121 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 12:22:32] 2025-06-03 09:08:22,121 | INFO     | aborting loop
[2025-06-03 12:22:32] 2025-06-03 09:08:22,485 | INFO     | all job control threads have been joined
[2025-06-03 12:22:32] 2025-06-03 09:08:22,631 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 12:22:32] 2025-06-03 09:08:22,631 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 12:22:32] 2025-06-03 09:08:22,631 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 12:22:32] 2025-06-03 09:08:22,631 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 12:22:32] 2025-06-03 09:08:22,744 | INFO     | all payload control threads have been joined
[2025-06-03 12:22:32] 2025-06-03 09:08:23,127 | INFO     | [job] retrieve thread has finished
[2025-06-03 12:22:32] 2025-06-03 09:08:23,127 | INFO     | [job] job monitor thread has finished
[2025-06-03 12:22:32] 2025-06-03 09:08:23,138 | INFO     | all data control threads have been joined
[2025-06-03 12:22:32] 2025-06-03 09:08:23,168 | INFO     | [job] validate thread has finished
[2025-06-03 12:22:32] 2025-06-03 09:08:23,434 | INFO     | [payload] validate_post thread has finished
[2025-06-03 12:22:32] 2025-06-03 09:08:23,491 | INFO     | [job] control thread has finished
[2025-06-03 12:22:32] 2025-06-03 09:08:23,750 | INFO     | [payload] control thread has finished
[2025-06-03 12:22:32] 2025-06-03 09:08:24,144 | INFO     | [data] control thread has finished
[2025-06-03 12:22:32] 2025-06-03 09:08:24,151 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 12:22:32] 2025-06-03 09:08:24,260 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 12:22:32] 2025-06-03 09:08:24,346 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 12:22:32] 2025-06-03 09:08:24,471 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 12:22:32] 2025-06-03 09:08:24,498 | INFO     | [data] copytool_in thread has finished
[2025-06-03 12:22:32] 2025-06-03 09:08:24,501 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 12:22:32] 2025-06-03 09:08:24,594 | INFO     | [payload] failed_post thread has finished
[2025-06-03 12:22:32] 2025-06-03 09:08:24,639 | INFO     | [data] copytool_out thread has finished
[2025-06-03 12:22:32] 2025-06-03 09:08:24,642 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 12:22:32] 2025-06-03 09:08:25,352 | INFO     | [job] queue monitor thread has finished
[2025-06-03 12:22:32] 2025-06-03 09:08:28,653 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 12:22:32] 2025-06-03 09:08:29,555 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140616309978944)>', '<ExcThread(monitor, started 140615744481024)>']
[2025-06-03 12:22:32] 2025-06-03 09:08:29,673 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 12:22:32] 2025-06-03 09:08:29,673 | INFO     | [monitor] control thread has ended
[2025-06-03 12:22:32] 2025-06-03 09:08:34,580 | INFO     | all workflow threads have been joined
[2025-06-03 12:22:32] 2025-06-03 09:08:34,581 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 12:22:32] 2025-06-03 09:08:34,581 | INFO     | traces error code: 0
[2025-06-03 12:22:32] 2025-06-03 09:08:34,581 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 12:22:32] 2025-06-03 09:08:34,954 [wrapper] ==== pilot stdout END ====
[2025-06-03 12:22:32] 2025-06-03 09:08:35,007 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 12:22:32] 2025-06-03 09:08:35,112 [wrapper] pilotpid: 19216
[2025-06-03 12:22:32] 2025-06-03 09:08:35,205 [wrapper] Pilot exit status: 0
[2025-06-03 12:22:32] 2025-06-03 09:08:35,536 [wrapper] pandaids: 6677392620
[2025-06-03 12:22:32] 2025-06-03 09:08:35,675 [wrapper] cleanup supervisor_pilot 14798 19217
[2025-06-03 12:22:32] 2025-06-03 09:08:35,767 [wrapper] Test setup, not cleaning
[2025-06-03 12:22:32] 2025-06-03 09:08:35,870 [wrapper] apfmon messages muted
[2025-06-03 12:22:32] 2025-06-03 09:08:35,890 [wrapper] ==== wrapper stdout END ====
[2025-06-03 12:22:32] 2025-06-03 09:08:35,980 [wrapper] ==== wrapper stderr END ====
[2025-06-03 12:22:32]  *** Error codes and diagnostics ***
[2025-06-03 12:22:32]     "exeErrorCode": 0,
[2025-06-03 12:22:32]     "exeErrorDiag": "",
[2025-06-03 12:22:32]     "pilotErrorCode": 0,
[2025-06-03 12:22:32]     "pilotErrorDiag": "",
[2025-06-03 12:22:32]  *** Listing of results directory ***
[2025-06-03 12:22:32] total 394776
[2025-06-03 12:22:32] -rw-r--r--. 1 boinc boinc      5111 Jun  2 20:45 queuedata.json
[2025-06-03 12:22:32] -rw-r--r--. 1 boinc boinc    495897 Jun  2 20:47 pilot3.tar.gz
[2025-06-03 12:22:32] -rwx------. 1 boinc boinc     37140 Jun  2 20:47 runpilot2-wrapper.sh
[2025-06-03 12:22:32] -rw-r--r--. 1 boinc boinc       100 Jun  3 06:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 12:22:32] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 06:56 run_atlas
[2025-06-03 12:22:32] -rw-r--r--. 1 boinc boinc       105 Jun  3 06:56 job.xml
[2025-06-03 12:22:32] -rw-r--r--. 2 boinc boinc 217719415 Jun  3 06:56 EVNT.45006593._000323.pool.root.1
[2025-06-03 12:22:32] -rw-r--r--. 1 boinc boinc      6392 Jun  3 06:56 init_data.xml
[2025-06-03 12:22:32] -rw-r--r--. 2 boinc boinc     15093 Jun  3 06:56 start_atlas.sh
[2025-06-03 12:22:32] drwxrwx--x. 2 boinc boinc        68 Jun  3 06:56 shared
[2025-06-03 12:22:32] -rw-r--r--. 2 boinc boinc    508875 Jun  3 06:56 input.tar.gz
[2025-06-03 12:22:32] -rw-r--r--. 1 boinc boinc         0 Jun  3 06:56 boinc_lockfile
[2025-06-03 12:22:32] -rw-r--r--. 1 boinc boinc      2521 Jun  3 07:21 pandaJob.out
[2025-06-03 12:22:32] -rw-------. 1 boinc boinc    988073 Jun  3 07:22 agis_schedconf.cvmfs.json
[2025-06-03 12:22:32] drwx------. 4 boinc boinc      4096 Jun  3 07:22 pilot3
[2025-06-03 12:22:32] -rw-------. 1 boinc boinc 179570698 Jun  3 11:05 HITS.45006595._008068.pool.root.1
[2025-06-03 12:22:32] -rw-r--r--. 1 boinc boinc       531 Jun  3 11:06 boinc_task_state.xml
[2025-06-03 12:22:32] -rw-------. 1 boinc boinc      1042 Jun  3 11:06 memory_monitor_summary.json
[2025-06-03 12:22:32] -rw-------. 1 boinc boinc   1603667 Jun  3 11:06 agis_ddmendpoints.agis.ALL.json
[2025-06-03 12:22:32] -rw-------. 1 boinc boinc    387040 Jun  3 11:06 log.45006595._008068.job.log.tgz.1
[2025-06-03 12:22:32] -rw-------. 1 boinc boinc        95 Jun  3 11:07 pilot_heartbeat.json
[2025-06-03 12:22:32] -rw-------. 1 boinc boinc      7689 Jun  3 11:08 heartbeat.json
[2025-06-03 12:22:32] -rw-------. 1 boinc boinc      4533 Jun  3 11:08 pilotlog.txt
[2025-06-03 12:22:32] -rw-------. 1 boinc boinc   1181901 Jun  3 11:08 log.45006595._008068.job.log.1
[2025-06-03 12:22:32] -rw-------. 1 boinc boinc       357 Jun  3 11:08 output.list
[2025-06-03 12:22:32] -rw-r--r--. 1 boinc boinc       620 Jun  3 11:08 runtime_log
[2025-06-03 12:22:32] -rw-------. 1 boinc boinc   1587200 Jun  3 11:08 result.tar.gz
[2025-06-03 12:22:32] -rw-------. 1 boinc boinc       656 Jun  3 11:08 szoKDmsMPg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmE5fKDm93bLcm.diag
[2025-06-03 12:22:32] -rw-r--r--. 1 boinc boinc      8673 Jun  3 11:08 runtime_log.err
[2025-06-03 12:22:32] -rw-r--r--. 1 boinc boinc      8192 Jun  3 12:22 boinc_mmap_file
[2025-06-03 12:22:32] -rw-r--r--. 1 boinc boinc        28 Jun  3 12:22 wrapper_checkpoint.txt
[2025-06-03 12:22:32] -rw-r--r--. 1 boinc boinc     20468 Jun  3 12:22 stderr.txt
[2025-06-03 12:22:32] HITS file was successfully produced:
[2025-06-03 12:22:32] -rw-------. 1 boinc boinc 179570698 Jun  3 11:05 shared/HITS.pool.root.1
[2025-06-03 12:22:32]  *** Contents of shared directory: ***
[2025-06-03 12:22:32] total 390052
[2025-06-03 12:22:32] -rw-r--r--. 2 boinc boinc 217719415 Jun  3 06:56 ATLAS.root_0
[2025-06-03 12:22:32] -rw-r--r--. 2 boinc boinc     15093 Jun  3 06:56 start_atlas.sh
[2025-06-03 12:22:32] -rw-r--r--. 2 boinc boinc    508875 Jun  3 06:56 input.tar.gz
[2025-06-03 12:22:32] -rw-------. 1 boinc boinc 179570698 Jun  3 11:05 HITS.pool.root.1
[2025-06-03 12:22:32] -rw-------. 1 boinc boinc   1587200 Jun  3 11:08 result.tar.gz
12:22:34 (901): run_atlas exited; CPU time 49834.064530
12:22:34 (901): called boinc_finish(0)

</stderr_txt>
]]>

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