Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:48:10 (11699): wrapper (7.7.26015): starting
06:48:10 (11699): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 06:48:10] Arguments: --nthreads 8
[2025-06-03 06:48:10] Threads: 8
[2025-06-03 06:48:10] Checking for CVMFS
[2025-06-03 06:48:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 06:48:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 06:48:11] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 06:48:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 06:48:12] 2.11.2.0 16729 31420 88068 146729 2 60 14091138 25165825 4632 130560 0 16041093 99.831 18458954 2638 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 06:48:12] CVMFS is ok
[2025-06-03 06:48:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 06:48:12] Checking for apptainer binary...
[2025-06-03 06:48:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 06:48:12] Running /usr/bin/apptainer --version
[2025-06-03 06:48:12] apptainer version 1.3.2-1.el7
[2025-06-03 06:48:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 07:06:13] cg-vwn332.simple-grid.lan
[2025-06-03 07:06:13] apptainer works
[2025-06-03 07:06:13] Set ATHENA_PROC_NUMBER=8
[2025-06-03 07:06:13] Set ATHENA_CORE_NUMBER=8
[2025-06-03 07:06:13] Starting ATLAS job with PandaID=6677392360
[2025-06-03 07:06:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/20 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 11:11:57]  *** The last 200 lines of the pilot log: ***
[2025-06-03 11:11:57] 2025-06-03 08:59:35,623 | INFO     | extracted standard info from prmon json
[2025-06-03 11:11:57] 2025-06-03 08:59:35,623 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 11:11:57] 2025-06-03 08:59:35,624 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 11:11:57] 2025-06-03 08:59:35,624 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 11:11:57] 2025-06-03 08:59:35,624 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 11:11:57] 2025-06-03 08:59:35,629 | INFO     | fitting pss+swap vs Time
[2025-06-03 11:11:57] 2025-06-03 08:59:35,629 | INFO     | sum of square deviations: 3168461268.0
[2025-06-03 11:11:57] 2025-06-03 08:59:35,631 | INFO     | sum of deviations: 38640659291.0
[2025-06-03 11:11:57] 2025-06-03 08:59:35,631 | INFO     | mean x: 1748934446.0
[2025-06-03 11:11:57] 2025-06-03 08:59:35,631 | INFO     | mean y: 2471837.861751152
[2025-06-03 11:11:57] 2025-06-03 08:59:35,631 | INFO     | -- intersect: -21326487027.0316
[2025-06-03 11:11:57] 2025-06-03 08:59:35,631 | INFO     | intersect: -21326487027.0316
[2025-06-03 11:11:57] 2025-06-03 08:59:35,632 | INFO     | chi2: 7.550240036988794
[2025-06-03 11:11:57] 2025-06-03 08:59:35,632 | INFO     | sum of square deviations: 2954447953.0
[2025-06-03 11:11:57] 2025-06-03 08:59:35,634 | INFO     | sum of deviations: 53272725326.00002
[2025-06-03 11:11:57] 2025-06-03 08:59:35,634 | INFO     | mean x: 1748934293.5
[2025-06-03 11:11:57] 2025-06-03 08:59:35,634 | INFO     | mean y: 2482064.4433962265
[2025-06-03 11:11:57] 2025-06-03 08:59:35,634 | INFO     | -- intersect: -31533188122.685944
[2025-06-03 11:11:57] 2025-06-03 08:59:35,634 | INFO     | intersect: -31533188122.685944
[2025-06-03 11:11:57] 2025-06-03 08:59:35,635 | INFO     | chi2: 6.782528944333701
[2025-06-03 11:11:57] 2025-06-03 08:59:35,635 | INFO     | current chi2=6.782528944333701 (change=10.16803557097601 %)
[2025-06-03 11:11:57] 2025-06-03 08:59:35,635 | INFO     | right removable region: 211
[2025-06-03 11:11:57] 2025-06-03 08:59:35,635 | INFO     | sum of square deviations: 2954447953.0
[2025-06-03 11:11:57] 2025-06-03 08:59:35,637 | INFO     | sum of deviations: -39686395101.00001
[2025-06-03 11:11:57] 2025-06-03 08:59:35,637 | INFO     | mean x: 1748934598.5
[2025-06-03 11:11:57] 2025-06-03 08:59:35,637 | INFO     | mean y: 2527624.245283019
[2025-06-03 11:11:57] 2025-06-03 08:59:35,637 | INFO     | -- intersect: 23495549192.420395
[2025-06-03 11:11:57] 2025-06-03 08:59:35,637 | INFO     | intersect: 23495549192.420395
[2025-06-03 11:11:57] 2025-06-03 08:59:35,638 | INFO     | chi2: 2.3563505766433765
[2025-06-03 11:11:57] 2025-06-03 08:59:35,638 | INFO     | current chi2=2.3563505766433765 (change=68.79105081296008 %)
[2025-06-03 11:11:57] 2025-06-03 08:59:35,638 | INFO     | sum of square deviations: 2750295288.0
[2025-06-03 11:11:57] 2025-06-03 08:59:35,640 | INFO     | sum of deviations: -72747116052.99998
[2025-06-03 11:11:57] 2025-06-03 08:59:35,640 | INFO     | mean x: 1748934751.0
[2025-06-03 11:11:57] 2025-06-03 08:59:35,640 | INFO     | mean y: 2552128.0289855073
[2025-06-03 11:11:57] 2025-06-03 08:59:35,640 | INFO     | -- intersect: 46263024541.75391
[2025-06-03 11:11:57] 2025-06-03 08:59:35,640 | INFO     | intersect: 46263024541.75391
[2025-06-03 11:11:57] 2025-06-03 08:59:35,641 | INFO     | chi2: 1.1224759604775665
[2025-06-03 11:11:57] 2025-06-03 08:59:35,641 | INFO     | current chi2=1.1224759604775665 (change=52.36379630417582 %)
[2025-06-03 11:11:57] 2025-06-03 08:59:35,641 | INFO     | sum of square deviations: 2555770710.5
[2025-06-03 11:11:57] 2025-06-03 08:59:35,643 | INFO     | sum of deviations: -75192750165.5
[2025-06-03 11:11:57] 2025-06-03 08:59:35,643 | INFO     | mean x: 1748934903.5
[2025-06-03 11:11:57] 2025-06-03 08:59:35,643 | INFO     | mean y: 2554018.628712871
[2025-06-03 11:11:57] 2025-06-03 08:59:35,643 | INFO     | -- intersect: 51457570978.60899
[2025-06-03 11:11:57] 2025-06-03 08:59:35,643 | INFO     | intersect: 51457570978.60899
[2025-06-03 11:11:57] 2025-06-03 08:59:35,643 | INFO     | chi2: 1.0795650592747432
[2025-06-03 11:11:57] 2025-06-03 08:59:35,644 | INFO     | current chi2=1.0795650592747432 (change=3.8228793055457926 %)
[2025-06-03 11:11:57] 2025-06-03 08:59:35,644 | INFO     | left removable region: 30
[2025-06-03 11:11:57] 2025-06-03 08:59:35,644 | INFO     | sum of square deviations: 1838657730.0
[2025-06-03 11:11:57] 2025-06-03 08:59:35,646 | INFO     | sum of deviations: -42053484119.0
[2025-06-03 11:11:57] 2025-06-03 08:59:35,646 | INFO     | mean x: 1748935178.0
[2025-06-03 11:11:57] 2025-06-03 08:59:35,646 | INFO     | mean y: 2552060.226519337
[2025-06-03 11:11:57] 2025-06-03 08:59:35,646 | INFO     | -- intersect: 40003916388.74863
[2025-06-03 11:11:57] 2025-06-03 08:59:35,646 | INFO     | intersect: 40003916388.74863
[2025-06-03 11:11:57] 2025-06-03 08:59:35,646 | INFO     | chi2: 0.19391565999835192
[2025-06-03 11:11:57] 2025-06-03 08:59:35,647 | INFO     | -- intersect: 40003916388.74863
[2025-06-03 11:11:57] 2025-06-03 08:59:35,647 | INFO     | current memory leak: -22.87 B/s (using 181 data points, chi2=0.19)
[2025-06-03 11:11:57] 2025-06-03 08:59:35,648 | INFO     | ..............................
[2025-06-03 11:11:57] 2025-06-03 08:59:35,648 | INFO     | . Timing measurements:
[2025-06-03 11:11:57] 2025-06-03 08:59:35,648 | INFO     | . get job = 0 s
[2025-06-03 11:11:57] 2025-06-03 08:59:35,648 | INFO     | . initial setup = 10 s
[2025-06-03 11:11:57] 2025-06-03 08:59:35,648 | INFO     | . payload setup = 148 s
[2025-06-03 11:11:57] 2025-06-03 08:59:35,648 | INFO     | . stage-in = 0 s
[2025-06-03 11:11:57] 2025-06-03 08:59:35,648 | INFO     | . payload execution = 13381 s
[2025-06-03 11:11:57] 2025-06-03 08:59:35,648 | INFO     | . stage-out = 3 s
[2025-06-03 11:11:57] 2025-06-03 08:59:35,649 | INFO     | . log creation = 1 s
[2025-06-03 11:11:57] 2025-06-03 08:59:35,649 | INFO     | ..............................
[2025-06-03 11:11:57] 2025-06-03 08:59:35,774 | INFO     | 
[2025-06-03 11:11:57] 2025-06-03 08:59:35,775 | INFO     | job summary report
[2025-06-03 11:11:57] 2025-06-03 08:59:35,775 | INFO     | --------------------------------------------------
[2025-06-03 11:11:57] 2025-06-03 08:59:35,775 | INFO     | PanDA job id: 6677392360
[2025-06-03 11:11:57] 2025-06-03 08:59:35,775 | INFO     | task id: 45006595
[2025-06-03 11:11:57] 2025-06-03 08:59:35,775 | INFO     | errors: (none)
[2025-06-03 11:11:57] 2025-06-03 08:59:35,775 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 11:11:57] 2025-06-03 08:59:35,775 | INFO     | pilot state: finished 
[2025-06-03 11:11:57] 2025-06-03 08:59:35,775 | INFO     | transexitcode: 0
[2025-06-03 11:11:57] 2025-06-03 08:59:35,776 | INFO     | exeerrorcode: 0
[2025-06-03 11:11:57] 2025-06-03 08:59:35,776 | INFO     | exeerrordiag: 
[2025-06-03 11:11:57] 2025-06-03 08:59:35,776 | INFO     | exitcode: 0
[2025-06-03 11:11:57] 2025-06-03 08:59:35,776 | INFO     | exitmsg: OK
[2025-06-03 11:11:57] 2025-06-03 08:59:35,776 | INFO     | cpuconsumptiontime: 49281 s
[2025-06-03 11:11:57] 2025-06-03 08:59:35,776 | INFO     | nevents: 400
[2025-06-03 11:11:57] 2025-06-03 08:59:35,776 | INFO     | neventsw: 0
[2025-06-03 11:11:57] 2025-06-03 08:59:35,776 | INFO     | pid: 4155
[2025-06-03 11:11:57] 2025-06-03 08:59:35,776 | INFO     | pgrp: 4155
[2025-06-03 11:11:57] 2025-06-03 08:59:35,776 | INFO     | corecount: 8
[2025-06-03 11:11:57] 2025-06-03 08:59:35,777 | INFO     | event service: False
[2025-06-03 11:11:57] 2025-06-03 08:59:35,777 | INFO     | sizes: {0: 2404349, 1: 2405035, 2: 2405234, 13: 2405234, 23: 2405290, 34: 2405318, 45: 2405474, 55: 2405502, 66: 2405530, 77: 2405558, 88: 2405614, 90: 2406128, 98
[2025-06-03 11:11:57] 2025-06-03 08:59:35,777 | INFO     | --------------------------------------------------
[2025-06-03 11:11:57] 2025-06-03 08:59:35,777 | INFO     | 
[2025-06-03 11:11:57] 2025-06-03 08:59:35,777 | INFO     | executing command: ls -lF /var/lib/boinc/slots/20
[2025-06-03 11:11:57] 2025-06-03 08:59:35,857 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 11:11:57] 2025-06-03 08:59:35,859 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 11:11:57] 2025-06-03 08:59:35,859 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 11:11:57] 2025-06-03 08:59:35,860 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 11:11:57] 2025-06-03 08:59:35,860 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 11:11:57] 2025-06-03 08:59:35,860 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 11:11:57] 2025-06-03 08:59:35,860 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 11:11:57] 2025-06-03 08:59:35,860 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 11:11:57] 2025-06-03 08:59:35,860 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 11:11:57] 2025-06-03 08:59:35,860 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 11:11:57] 2025-06-03 08:59:35,860 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 11:11:57] 2025-06-03 08:59:35,860 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 11:11:57] 2025-06-03 08:59:35,860 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 11:11:57] 2025-06-03 08:59:35,861 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 11:11:57] 2025-06-03 08:59:35,861 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 11:11:57] 2025-06-03 08:59:35,861 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 11:11:57] 2025-06-03 08:59:35,861 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 11:11:57] 2025-06-03 08:59:35,861 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 11:11:57] 2025-06-03 08:59:35,861 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 11:11:57] 2025-06-03 08:59:35,861 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 11:11:57] 2025-06-03 08:59:35,861 | INFO     | job 6677392360 has completed (purged errors)
[2025-06-03 11:11:57] 2025-06-03 08:59:35,862 | INFO     | overall cleanup function is called
[2025-06-03 11:11:57] 2025-06-03 08:59:36,870 | INFO     | --- collectZombieJob: --- 10, [4155]
[2025-06-03 11:11:57] 2025-06-03 08:59:36,870 | INFO     | zombie collector waiting for pid 4155
[2025-06-03 11:11:57] 2025-06-03 08:59:36,871 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 11:11:57] 2025-06-03 08:59:36,871 | INFO     | collected zombie processes
[2025-06-03 11:11:57] 2025-06-03 08:59:36,871 | INFO     | will attempt to kill all subprocesses of pid=4155
[2025-06-03 11:11:57] 2025-06-03 08:59:36,975 | INFO     | process IDs to be killed: [4155] (in reverse order)
[2025-06-03 11:11:57] 2025-06-03 08:59:37,812 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 11:11:57] 2025-06-03 08:59:37,812 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 11:11:57] 2025-06-03 08:59:37,816 | INFO     | did not find any defunct processes belonging to 4155
[2025-06-03 11:11:57] 2025-06-03 08:59:37,819 | INFO     | did not find any defunct processes belonging to 4155
[2025-06-03 11:11:57] 2025-06-03 08:59:37,820 | INFO     | ready for new job
[2025-06-03 11:11:57] 2025-06-03 08:59:37,820 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 11:11:57] 2025-06-03 08:59:37,822 | INFO     | **************************************
[2025-06-03 11:11:57] 2025-06-03 08:59:37,822 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 11:11:57] 2025-06-03 08:59:37,822 | INFO     | **************************************
[2025-06-03 11:11:57] 2025-06-03 08:59:37,822 | INFO     | 
[2025-06-03 11:11:57] 2025-06-03 08:59:37,823 | INFO     | pilot is running in a VM
[2025-06-03 11:11:57] 2025-06-03 08:59:37,823 | INFO     | architecture information:
[2025-06-03 11:11:57] 2025-06-03 08:59:37,836 | INFO     | executing command: cat /etc/os-release
[2025-06-03 11:11:57] 2025-06-03 08:59:38,073 | INFO     | cat /etc/os-release:
[2025-06-03 11:11:57] NAME="CentOS Linux"
[2025-06-03 11:11:57] VERSION="7 (Core)"
[2025-06-03 11:11:57] ID="centos"
[2025-06-03 11:11:57] ID_LIKE="rhel fedora"
[2025-06-03 11:11:57] VERSION_ID="7"
[2025-06-03 11:11:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 11:11:57] ANSI_COLOR="0;31"
[2025-06-03 11:11:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 11:11:57] HOME_URL="https://www.centos.org/"
[2025-06-03 11:11:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 11:11:57] 
[2025-06-03 11:11:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 11:11:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 11:11:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 11:11:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 11:11:57] 
[2025-06-03 11:11:57] 2025-06-03 08:59:38,073 | INFO     | **************************************
[2025-06-03 11:11:57] 2025-06-03 08:59:38,577 | INFO     | executing command: df -mP /var/lib/boinc/slots/20
[2025-06-03 11:11:57] 2025-06-03 08:59:38,741 | INFO     | sufficient remaining disk space (496725131264 B)
[2025-06-03 11:11:57] 2025-06-03 08:59:38,741 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 11:11:57] 2025-06-03 08:59:38,741 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 11:11:57] 2025-06-03 08:59:38,741 | INFO     | update_server=False
[2025-06-03 11:11:57] 2025-06-03 08:59:38,741 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 11:11:57] 2025-06-03 08:59:38,742 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 11:11:57] 2025-06-03 08:59:38,742 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 11:11:57] 2025-06-03 08:59:38,743 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 11:11:57] 2025-06-03 08:59:38,743 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 11:11:57] 2025-06-03 08:59:39,028 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 11:11:57] 2025-06-03 08:59:39,103 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 11:11:57] 2025-06-03 08:59:39,103 | INFO     | aborting loop
[2025-06-03 11:11:57] 2025-06-03 08:59:39,431 | INFO     | all job control threads have been joined
[2025-06-03 11:11:57] 2025-06-03 08:59:39,433 | INFO     | all payload control threads have been joined
[2025-06-03 11:11:57] 2025-06-03 08:59:39,739 | INFO     | all data control threads have been joined
[2025-06-03 11:11:57] 2025-06-03 08:59:39,747 | INFO     | [job] retrieve thread has finished
[2025-06-03 11:11:57] 2025-06-03 08:59:39,799 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 11:11:57] 2025-06-03 08:59:40,081 | INFO     | [data] copytool_in thread has finished
[2025-06-03 11:11:57] 2025-06-03 08:59:40,087 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 11:11:57] 2025-06-03 08:59:40,108 | INFO     | [job] job monitor thread has finished
[2025-06-03 11:11:57] 2025-06-03 08:59:40,127 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 11:11:57] 2025-06-03 08:59:40,179 | INFO     | [payload] failed_post thread has finished
[2025-06-03 11:11:57] 2025-06-03 08:59:40,437 | INFO     | [job] control thread has finished
[2025-06-03 11:11:57] 2025-06-03 08:59:40,439 | INFO     | [payload] control thread has finished
[2025-06-03 11:11:57] 2025-06-03 08:59:40,745 | INFO     | [data] control thread has finished
[2025-06-03 11:11:57] 2025-06-03 08:59:40,794 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 11:11:57] 2025-06-03 08:59:40,803 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 11:11:57] 2025-06-03 08:59:40,853 | INFO     | [job] validate thread has finished
[2025-06-03 11:11:57] 2025-06-03 08:59:41,035 | INFO     | [data] copytool_out thread has finished
[2025-06-03 11:11:57] 2025-06-03 08:59:41,237 | INFO     | [payload] validate_post thread has finished
[2025-06-03 11:11:57] 2025-06-03 08:59:41,799 | INFO     | [job] queue monitor thread has finished
[2025-06-03 11:11:57] 2025-06-03 08:59:42,000 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 11:11:57] 2025-06-03 08:59:46,009 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 11:11:57] 2025-06-03 08:59:47,362 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140227529217856)>', '<ExcThread(monitor, started 140227083478784)>']
[2025-06-03 11:11:57] 2025-06-03 08:59:47,797 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 11:11:57] 2025-06-03 08:59:47,797 | INFO     | [monitor] control thread has ended
[2025-06-03 11:11:57] 2025-06-03 08:59:52,388 | INFO     | all workflow threads have been joined
[2025-06-03 11:11:57] 2025-06-03 08:59:52,388 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 11:11:57] 2025-06-03 08:59:52,389 | INFO     | traces error code: 0
[2025-06-03 11:11:57] 2025-06-03 08:59:52,389 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 11:11:57] 2025-06-03 08:59:52,762 [wrapper] ==== pilot stdout END ====
[2025-06-03 11:11:57] 2025-06-03 08:59:52,842 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 11:11:57] 2025-06-03 08:59:52,935 [wrapper] pilotpid: 29981
[2025-06-03 11:11:57] 2025-06-03 08:59:53,016 [wrapper] Pilot exit status: 0
[2025-06-03 11:11:57] 2025-06-03 08:59:53,140 [wrapper] pandaids: 6677392360
[2025-06-03 11:11:57] 2025-06-03 08:59:53,730 [wrapper] cleanup supervisor_pilot 14017 29983
[2025-06-03 11:11:57] 2025-06-03 08:59:53,789 [wrapper] Test setup, not cleaning
[2025-06-03 11:11:57] 2025-06-03 08:59:53,834 [wrapper] apfmon messages muted
[2025-06-03 11:11:57] 2025-06-03 08:59:53,873 [wrapper] ==== wrapper stdout END ====
[2025-06-03 11:11:57] 2025-06-03 08:59:53,908 [wrapper] ==== wrapper stderr END ====
[2025-06-03 11:11:57]  *** Error codes and diagnostics ***
[2025-06-03 11:11:57]     "exeErrorCode": 0,
[2025-06-03 11:11:57]     "exeErrorDiag": "",
[2025-06-03 11:11:57]     "pilotErrorCode": 0,
[2025-06-03 11:11:57]     "pilotErrorDiag": "",
[2025-06-03 11:11:57]  *** Listing of results directory ***
[2025-06-03 11:11:57] total 390324
[2025-06-03 11:11:57] -rw-r--r--. 1 boinc boinc    495897 Jun  2 20:30 pilot3.tar.gz
[2025-06-03 11:11:57] -rwx------. 1 boinc boinc     37140 Jun  2 20:39 runpilot2-wrapper.sh
[2025-06-03 11:11:57] -rw-r--r--. 1 boinc boinc      5111 Jun  2 20:39 queuedata.json
[2025-06-03 11:11:57] -rw-r--r--. 1 boinc boinc       100 Jun  3 06:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 11:11:57] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 06:48 run_atlas
[2025-06-03 11:11:57] -rw-r--r--. 1 boinc boinc       105 Jun  3 06:48 job.xml
[2025-06-03 11:11:57] -rw-r--r--. 1 boinc boinc      6391 Jun  3 06:48 init_data.xml
[2025-06-03 11:11:57] -rw-r--r--. 2 boinc boinc 213663689 Jun  3 06:48 EVNT.45006593._000314.pool.root.1
[2025-06-03 11:11:57] -rw-r--r--. 2 boinc boinc     15093 Jun  3 06:48 start_atlas.sh
[2025-06-03 11:11:57] drwxrwx--x. 2 boinc boinc        68 Jun  3 06:48 shared
[2025-06-03 11:11:57] -rw-r--r--. 2 boinc boinc    508873 Jun  3 06:48 input.tar.gz
[2025-06-03 11:11:57] -rw-r--r--. 1 boinc boinc         0 Jun  3 06:48 boinc_lockfile
[2025-06-03 11:11:57] -rw-r--r--. 1 boinc boinc      2521 Jun  3 07:06 pandaJob.out
[2025-06-03 11:11:57] -rw-------. 1 boinc boinc    988073 Jun  3 07:09 agis_schedconf.cvmfs.json
[2025-06-03 11:11:57] drwx------. 4 boinc boinc      4096 Jun  3 07:09 pilot3
[2025-06-03 11:11:57] -rw-------. 1 boinc boinc 179065040 Jun  3 10:57 HITS.45006595._007848.pool.root.1
[2025-06-03 11:11:57] -rw-r--r--. 1 boinc boinc       530 Jun  3 10:57 boinc_task_state.xml
[2025-06-03 11:11:57] -rw-------. 1 boinc boinc      1012 Jun  3 10:58 memory_monitor_summary.json
[2025-06-03 11:11:57] -rw-------. 1 boinc boinc   1603667 Jun  3 10:58 agis_ddmendpoints.agis.ALL.json
[2025-06-03 11:11:57] -rw-------. 1 boinc boinc    390917 Jun  3 10:58 log.45006595._007848.job.log.tgz.1
[2025-06-03 11:11:57] -rw-------. 1 boinc boinc        95 Jun  3 10:58 pilot_heartbeat.json
[2025-06-03 11:11:57] -rw-------. 1 boinc boinc      7690 Jun  3 10:59 heartbeat.json
[2025-06-03 11:11:57] -rw-------. 1 boinc boinc      4540 Jun  3 10:59 pilotlog.txt
[2025-06-03 11:11:57] -rw-------. 1 boinc boinc   1177072 Jun  3 10:59 log.45006595._007848.job.log.1
[2025-06-03 11:11:57] -rw-------. 1 boinc boinc       357 Jun  3 10:59 output.list
[2025-06-03 11:11:57] -rw-r--r--. 1 boinc boinc       620 Jun  3 10:59 runtime_log
[2025-06-03 11:11:57] -rw-------. 1 boinc boinc   1587200 Jun  3 10:59 result.tar.gz
[2025-06-03 11:11:57] -rw-------. 1 boinc boinc       656 Jun  3 10:59 uI0LDm0EPg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmPFWKDmJSAT8m.diag
[2025-06-03 11:11:57] -rw-r--r--. 1 boinc boinc      8673 Jun  3 10:59 runtime_log.err
[2025-06-03 11:11:57] -rw-r--r--. 1 boinc boinc      8192 Jun  3 11:11 boinc_mmap_file
[2025-06-03 11:11:57] -rw-r--r--. 1 boinc boinc        28 Jun  3 11:11 wrapper_checkpoint.txt
[2025-06-03 11:11:57] -rw-r--r--. 1 boinc boinc     20499 Jun  3 11:11 stderr.txt
[2025-06-03 11:11:58] HITS file was successfully produced:
[2025-06-03 11:11:58] -rw-------. 1 boinc boinc 179065040 Jun  3 10:57 shared/HITS.pool.root.1
[2025-06-03 11:11:58]  *** Contents of shared directory: ***
[2025-06-03 11:11:58] total 385596
[2025-06-03 11:11:58] -rw-r--r--. 2 boinc boinc 213663689 Jun  3 06:48 ATLAS.root_0
[2025-06-03 11:11:58] -rw-r--r--. 2 boinc boinc     15093 Jun  3 06:48 start_atlas.sh
[2025-06-03 11:11:58] -rw-r--r--. 2 boinc boinc    508873 Jun  3 06:48 input.tar.gz
[2025-06-03 11:11:58] -rw-------. 1 boinc boinc 179065040 Jun  3 10:57 HITS.pool.root.1
[2025-06-03 11:11:58] -rw-------. 1 boinc boinc   1587200 Jun  3 10:59 result.tar.gz
11:11:59 (11699): run_atlas exited; CPU time 49466.384994
11:11:59 (11699): called boinc_finish(0)

</stderr_txt>
]]>

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