Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:17:50 (12775): wrapper (7.7.26015): starting
08:17:50 (12775): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 08:17:50] Arguments: --nthreads 8
[2025-06-03 08:17:50] Threads: 8
[2025-06-03 08:17:50] Checking for CVMFS
[2025-06-03 08:17:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 08:17:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 08:17:51] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 08:17:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 08:17:52] 2.11.2.0 6418 31410 92380 146729 1 60 19860864 25165824 4632 130560 0 16108987 99.741 19470808 2150 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 08:17:52] CVMFS is ok
[2025-06-03 08:17:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 08:17:52] Checking for apptainer binary...
[2025-06-03 08:17:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 08:17:52] Running /usr/bin/apptainer --version
[2025-06-03 08:17:52] apptainer version 1.3.2-1.el7
[2025-06-03 08:17:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 08:17:59] cg-vwn357.simple-grid.lan
[2025-06-03 08:17:59] apptainer works
[2025-06-03 08:17:59] Set ATHENA_PROC_NUMBER=8
[2025-06-03 08:17:59] Set ATHENA_CORE_NUMBER=8
[2025-06-03 08:17:59] Starting ATLAS job with PandaID=6677397910
[2025-06-03 08:17:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 12:16:29]  *** The last 200 lines of the pilot log: ***
[2025-06-03 12:16:29] 2025-06-03 10:07:38,270 | INFO     | extracted standard info from prmon json
[2025-06-03 12:16:29] 2025-06-03 10:07:38,270 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 12:16:29] 2025-06-03 10:07:38,270 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 12:16:29] 2025-06-03 10:07:38,270 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 12:16:29] 2025-06-03 10:07:38,270 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 12:16:29] 2025-06-03 10:07:38,275 | INFO     | fitting pss+swap vs Time
[2025-06-03 12:16:29] 2025-06-03 10:07:38,276 | INFO     | sum of square deviations: 3256879670.0
[2025-06-03 12:16:29] 2025-06-03 10:07:38,278 | INFO     | sum of deviations: -41303476736.0
[2025-06-03 12:16:29] 2025-06-03 10:07:38,278 | INFO     | mean x: 1748938463.0
[2025-06-03 12:16:29] 2025-06-03 10:07:38,278 | INFO     | mean y: 2533373.5342465756
[2025-06-03 12:16:29] 2025-06-03 10:07:38,278 | INFO     | -- intersect: 22182425306.48248
[2025-06-03 12:16:29] 2025-06-03 10:07:38,278 | INFO     | intersect: 22182425306.48248
[2025-06-03 12:16:29] 2025-06-03 10:07:38,285 | INFO     | chi2: 2.883976351508281
[2025-06-03 12:16:29] 2025-06-03 10:07:38,286 | INFO     | sum of square deviations: 3038856977.5
[2025-06-03 12:16:29] 2025-06-03 10:07:38,287 | INFO     | sum of deviations: -25239782394.499996
[2025-06-03 12:16:29] 2025-06-03 10:07:38,288 | INFO     | mean x: 1748938310.5
[2025-06-03 12:16:29] 2025-06-03 10:07:38,288 | INFO     | mean y: 2544422.73364486
[2025-06-03 12:16:29] 2025-06-03 10:07:38,288 | INFO     | -- intersect: 14528671418.924097
[2025-06-03 12:16:29] 2025-06-03 10:07:38,288 | INFO     | intersect: 14528671418.924097
[2025-06-03 12:16:29] 2025-06-03 10:07:38,288 | INFO     | chi2: 2.1223638269686447
[2025-06-03 12:16:29] 2025-06-03 10:07:38,289 | INFO     | current chi2=2.1223638269686447 (change=26.408417813180858 %)
[2025-06-03 12:16:29] 2025-06-03 10:07:38,289 | INFO     | sum of square deviations: 2830787960.0
[2025-06-03 12:16:29] 2025-06-03 10:07:38,291 | INFO     | sum of deviations: -23880488253.999992
[2025-06-03 12:16:29] 2025-06-03 10:07:38,291 | INFO     | mean x: 1748938158.0
[2025-06-03 12:16:29] 2025-06-03 10:07:38,291 | INFO     | mean y: 2545419.1818181816
[2025-06-03 12:16:29] 2025-06-03 10:07:38,291 | INFO     | -- intersect: 14756563639.28594
[2025-06-03 12:16:29] 2025-06-03 10:07:38,291 | INFO     | intersect: 14756563639.28594
[2025-06-03 12:16:29] 2025-06-03 10:07:38,292 | INFO     | chi2: 2.1214267664457807
[2025-06-03 12:16:29] 2025-06-03 10:07:38,292 | INFO     | current chi2=2.1214267664457807 (change=0.044151738309751325 %)
[2025-06-03 12:16:29] 2025-06-03 10:07:38,292 | INFO     | right removable region: 208
[2025-06-03 12:16:29] 2025-06-03 10:07:38,293 | INFO     | sum of square deviations: 3038856977.5
[2025-06-03 12:16:29] 2025-06-03 10:07:38,294 | INFO     | sum of deviations: -83541517392.0
[2025-06-03 12:16:29] 2025-06-03 10:07:38,294 | INFO     | mean x: 1748938615.5
[2025-06-03 12:16:29] 2025-06-03 10:07:38,295 | INFO     | mean y: 2562691.7570093456
[2025-06-03 12:16:29] 2025-06-03 10:07:38,295 | INFO     | -- intersect: 48082806956.669495
[2025-06-03 12:16:29] 2025-06-03 10:07:38,295 | INFO     | intersect: 48082806956.669495
[2025-06-03 12:16:29] 2025-06-03 10:07:38,301 | INFO     | chi2: 1.0293261040189474
[2025-06-03 12:16:29] 2025-06-03 10:07:38,302 | INFO     | current chi2=1.0293261040189474 (change=64.30878833383555 %)
[2025-06-03 12:16:29] 2025-06-03 10:07:38,302 | INFO     | sum of square deviations: 2830787960.0
[2025-06-03 12:16:29] 2025-06-03 10:07:38,304 | INFO     | sum of deviations: -84635961702.0
[2025-06-03 12:16:29] 2025-06-03 10:07:38,304 | INFO     | mean x: 1748938768.0
[2025-06-03 12:16:29] 2025-06-03 10:07:38,304 | INFO     | mean y: 2563455.4880382777
[2025-06-03 12:16:29] 2025-06-03 10:07:38,304 | INFO     | -- intersect: 52292991661.06479
[2025-06-03 12:16:29] 2025-06-03 10:07:38,304 | INFO     | intersect: 52292991661.06479
[2025-06-03 12:16:29] 2025-06-03 10:07:38,305 | INFO     | chi2: 0.9913211604227876
[2025-06-03 12:16:29] 2025-06-03 10:07:38,305 | INFO     | current chi2=0.9913211604227876 (change=3.692216047739543 %)
[2025-06-03 12:16:29] 2025-06-03 10:07:38,305 | INFO     | left removable region: 20
[2025-06-03 12:16:29] 2025-06-03 10:07:38,305 | INFO     | sum of square deviations: 2060343747.0
[2025-06-03 12:16:29] 2025-06-03 10:07:38,307 | INFO     | sum of deviations: -55732375500.0
[2025-06-03 12:16:29] 2025-06-03 10:07:38,307 | INFO     | mean x: 1748938737.5
[2025-06-03 12:16:29] 2025-06-03 10:07:38,307 | INFO     | mean y: 2569278.9680851065
[2025-06-03 12:16:29] 2025-06-03 10:07:38,307 | INFO     | -- intersect: 47311427612.32751
[2025-06-03 12:16:29] 2025-06-03 10:07:38,307 | INFO     | intersect: 47311427612.32751
[2025-06-03 12:16:29] 2025-06-03 10:07:38,308 | INFO     | chi2: 0.1903350849544996
[2025-06-03 12:16:29] 2025-06-03 10:07:38,308 | INFO     | -- intersect: 47311427612.32751
[2025-06-03 12:16:29] 2025-06-03 10:07:38,308 | INFO     | current memory leak: -27.05 B/s (using 188 data points, chi2=0.19)
[2025-06-03 12:16:29] 2025-06-03 10:07:38,309 | INFO     | ..............................
[2025-06-03 12:16:29] 2025-06-03 10:07:38,309 | INFO     | . Timing measurements:
[2025-06-03 12:16:29] 2025-06-03 10:07:38,309 | INFO     | . get job = 0 s
[2025-06-03 12:16:29] 2025-06-03 10:07:38,309 | INFO     | . initial setup = 7 s
[2025-06-03 12:16:29] 2025-06-03 10:07:38,310 | INFO     | . payload setup = 22 s
[2025-06-03 12:16:29] 2025-06-03 10:07:38,310 | INFO     | . stage-in = 0 s
[2025-06-03 12:16:29] 2025-06-03 10:07:38,310 | INFO     | . payload execution = 13380 s
[2025-06-03 12:16:29] 2025-06-03 10:07:38,310 | INFO     | . stage-out = 4 s
[2025-06-03 12:16:29] 2025-06-03 10:07:38,310 | INFO     | . log creation = 1 s
[2025-06-03 12:16:29] 2025-06-03 10:07:38,310 | INFO     | ..............................
[2025-06-03 12:16:29] 2025-06-03 10:07:38,568 | INFO     | 
[2025-06-03 12:16:29] 2025-06-03 10:07:38,569 | INFO     | job summary report
[2025-06-03 12:16:29] 2025-06-03 10:07:38,569 | INFO     | --------------------------------------------------
[2025-06-03 12:16:29] 2025-06-03 10:07:38,569 | INFO     | PanDA job id: 6677397910
[2025-06-03 12:16:29] 2025-06-03 10:07:38,569 | INFO     | task id: 45006595
[2025-06-03 12:16:29] 2025-06-03 10:07:38,569 | INFO     | errors: (none)
[2025-06-03 12:16:29] 2025-06-03 10:07:38,569 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 12:16:29] 2025-06-03 10:07:38,569 | INFO     | pilot state: finished 
[2025-06-03 12:16:29] 2025-06-03 10:07:38,569 | INFO     | transexitcode: 0
[2025-06-03 12:16:29] 2025-06-03 10:07:38,569 | INFO     | exeerrorcode: 0
[2025-06-03 12:16:29] 2025-06-03 10:07:38,570 | INFO     | exeerrordiag: 
[2025-06-03 12:16:29] 2025-06-03 10:07:38,570 | INFO     | exitcode: 0
[2025-06-03 12:16:29] 2025-06-03 10:07:38,570 | INFO     | exitmsg: OK
[2025-06-03 12:16:29] 2025-06-03 10:07:38,570 | INFO     | cpuconsumptiontime: 50821 s
[2025-06-03 12:16:29] 2025-06-03 10:07:38,570 | INFO     | nevents: 400
[2025-06-03 12:16:29] 2025-06-03 10:07:38,570 | INFO     | neventsw: 0
[2025-06-03 12:16:29] 2025-06-03 10:07:38,570 | INFO     | pid: 27526
[2025-06-03 12:16:29] 2025-06-03 10:07:38,570 | INFO     | pgrp: 27526
[2025-06-03 12:16:29] 2025-06-03 10:07:38,570 | INFO     | corecount: 8
[2025-06-03 12:16:29] 2025-06-03 10:07:38,570 | INFO     | event service: False
[2025-06-03 12:16:29] 2025-06-03 10:07:38,570 | INFO     | sizes: {0: 2404956, 1: 2405040, 3: 2405239, 14: 2405239, 25: 2405267, 36: 2405295, 47: 2405451, 57: 2405653, 58: 2405741, 68: 2405769, 13407: 2435612, 13411: 24445
[2025-06-03 12:16:29] 2025-06-03 10:07:38,570 | INFO     | --------------------------------------------------
[2025-06-03 12:16:29] 2025-06-03 10:07:38,571 | INFO     | 
[2025-06-03 12:16:29] 2025-06-03 10:07:38,571 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-06-03 12:16:29] 2025-06-03 10:07:39,352 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 12:16:29] 2025-06-03 10:07:39,353 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 12:16:29] 2025-06-03 10:07:39,353 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 12:16:29] 2025-06-03 10:07:39,353 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 12:16:29] 2025-06-03 10:07:39,353 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 12:16:29] 2025-06-03 10:07:39,353 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 12:16:29] 2025-06-03 10:07:39,353 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 12:16:29] 2025-06-03 10:07:39,353 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 12:16:29] 2025-06-03 10:07:39,353 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 12:16:29] 2025-06-03 10:07:39,353 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 12:16:29] 2025-06-03 10:07:39,354 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 12:16:29] 2025-06-03 10:07:39,354 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 12:16:29] 2025-06-03 10:07:39,354 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 12:16:29] 2025-06-03 10:07:39,354 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 12:16:29] 2025-06-03 10:07:39,354 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 12:16:29] 2025-06-03 10:07:39,354 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 12:16:29] 2025-06-03 10:07:39,354 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 12:16:29] 2025-06-03 10:07:39,354 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 12:16:29] 2025-06-03 10:07:39,354 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 12:16:29] 2025-06-03 10:07:39,354 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 12:16:29] 2025-06-03 10:07:39,354 | INFO     | job 6677397910 has completed (purged errors)
[2025-06-03 12:16:29] 2025-06-03 10:07:39,355 | INFO     | overall cleanup function is called
[2025-06-03 12:16:29] 2025-06-03 10:07:40,363 | INFO     | --- collectZombieJob: --- 10, [27526]
[2025-06-03 12:16:29] 2025-06-03 10:07:40,364 | INFO     | zombie collector waiting for pid 27526
[2025-06-03 12:16:29] 2025-06-03 10:07:40,364 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 12:16:29] 2025-06-03 10:07:40,364 | INFO     | collected zombie processes
[2025-06-03 12:16:29] 2025-06-03 10:07:40,364 | INFO     | will attempt to kill all subprocesses of pid=27526
[2025-06-03 12:16:29] 2025-06-03 10:07:40,534 | INFO     | process IDs to be killed: [27526] (in reverse order)
[2025-06-03 12:16:29] 2025-06-03 10:07:41,027 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 12:16:29] 2025-06-03 10:07:41,027 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 12:16:29] 2025-06-03 10:07:41,031 | INFO     | did not find any defunct processes belonging to 27526
[2025-06-03 12:16:29] 2025-06-03 10:07:41,033 | INFO     | did not find any defunct processes belonging to 27526
[2025-06-03 12:16:29] 2025-06-03 10:07:41,033 | INFO     | ready for new job
[2025-06-03 12:16:29] 2025-06-03 10:07:41,034 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 12:16:29] 2025-06-03 10:07:41,036 | INFO     | **************************************
[2025-06-03 12:16:29] 2025-06-03 10:07:41,036 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 12:16:29] 2025-06-03 10:07:41,036 | INFO     | **************************************
[2025-06-03 12:16:29] 2025-06-03 10:07:41,036 | INFO     | 
[2025-06-03 12:16:29] 2025-06-03 10:07:41,036 | INFO     | pilot is running in a VM
[2025-06-03 12:16:29] 2025-06-03 10:07:41,037 | INFO     | architecture information:
[2025-06-03 12:16:29] 2025-06-03 10:07:41,045 | INFO     | executing command: cat /etc/os-release
[2025-06-03 12:16:29] 2025-06-03 10:07:41,205 | INFO     | cat /etc/os-release:
[2025-06-03 12:16:29] NAME="CentOS Linux"
[2025-06-03 12:16:29] VERSION="7 (Core)"
[2025-06-03 12:16:29] ID="centos"
[2025-06-03 12:16:29] ID_LIKE="rhel fedora"
[2025-06-03 12:16:29] VERSION_ID="7"
[2025-06-03 12:16:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 12:16:29] ANSI_COLOR="0;31"
[2025-06-03 12:16:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 12:16:29] HOME_URL="https://www.centos.org/"
[2025-06-03 12:16:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 12:16:29] 
[2025-06-03 12:16:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 12:16:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 12:16:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 12:16:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 12:16:29] 
[2025-06-03 12:16:29] 2025-06-03 10:07:41,205 | INFO     | **************************************
[2025-06-03 12:16:29] 2025-06-03 10:07:41,709 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-06-03 12:16:29] 2025-06-03 10:07:41,999 | INFO     | sufficient remaining disk space (496488153088 B)
[2025-06-03 12:16:29] 2025-06-03 10:07:42,000 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 12:16:29] 2025-06-03 10:07:42,000 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 12:16:29] 2025-06-03 10:07:42,000 | INFO     | update_server=False
[2025-06-03 12:16:29] 2025-06-03 10:07:42,000 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 12:16:29] 2025-06-03 10:07:42,003 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 12:16:29] 2025-06-03 10:07:42,004 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 12:16:29] 2025-06-03 10:07:42,004 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 12:16:29] 2025-06-03 10:07:42,004 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 12:16:29] 2025-06-03 10:07:42,004 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 12:16:29] 2025-06-03 10:07:42,019 | INFO     | all data control threads have been joined
[2025-06-03 12:16:29] 2025-06-03 10:07:42,826 | INFO     | all job control threads have been joined
[2025-06-03 12:16:29] 2025-06-03 10:07:42,981 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 12:16:29] 2025-06-03 10:07:42,982 | INFO     | aborting loop
[2025-06-03 12:16:29] 2025-06-03 10:07:43,011 | INFO     | [job] retrieve thread has finished
[2025-06-03 12:16:29] 2025-06-03 10:07:43,025 | INFO     | [data] control thread has finished
[2025-06-03 12:16:29] 2025-06-03 10:07:43,174 | INFO     | all payload control threads have been joined
[2025-06-03 12:16:29] 2025-06-03 10:07:43,324 | INFO     | [payload] validate_post thread has finished
[2025-06-03 12:16:29] 2025-06-03 10:07:43,512 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 12:16:29] 2025-06-03 10:07:43,833 | INFO     | [job] control thread has finished
[2025-06-03 12:16:29] 2025-06-03 10:07:43,928 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 12:16:29] 2025-06-03 10:07:43,988 | INFO     | [job] job monitor thread has finished
[2025-06-03 12:16:29] 2025-06-03 10:07:44,013 | INFO     | [data] copytool_out thread has finished
[2025-06-03 12:16:29] 2025-06-03 10:07:44,064 | INFO     | [job] validate thread has finished
[2025-06-03 12:16:29] 2025-06-03 10:07:44,154 | INFO     | [payload] failed_post thread has finished
[2025-06-03 12:16:29] 2025-06-03 10:07:44,180 | INFO     | [payload] control thread has finished
[2025-06-03 12:16:29] 2025-06-03 10:07:44,183 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 12:16:29] 2025-06-03 10:07:44,236 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 12:16:29] 2025-06-03 10:07:44,254 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 12:16:29] 2025-06-03 10:07:44,255 | INFO     | [data] copytool_in thread has finished
[2025-06-03 12:16:29] 2025-06-03 10:07:44,344 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 12:16:29] 2025-06-03 10:07:44,518 | INFO     | [job] queue monitor thread has finished
[2025-06-03 12:16:29] 2025-06-03 10:07:48,263 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 12:16:29] 2025-06-03 10:07:49,300 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139669154703168)>', '<ExcThread(monitor, started 139668561581824)>']
[2025-06-03 12:16:29] 2025-06-03 10:07:50,055 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 12:16:29] 2025-06-03 10:07:50,056 | INFO     | [monitor] control thread has ended
[2025-06-03 12:16:29] 2025-06-03 10:07:54,326 | INFO     | all workflow threads have been joined
[2025-06-03 12:16:29] 2025-06-03 10:07:54,327 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 12:16:29] 2025-06-03 10:07:54,327 | INFO     | traces error code: 0
[2025-06-03 12:16:29] 2025-06-03 10:07:54,327 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 12:16:29] 2025-06-03 10:07:54,618 [wrapper] ==== pilot stdout END ====
[2025-06-03 12:16:29] 2025-06-03 10:07:54,666 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 12:16:29] 2025-06-03 10:07:54,723 [wrapper] pilotpid: 18895
[2025-06-03 12:16:29] 2025-06-03 10:07:54,805 [wrapper] Pilot exit status: 0
[2025-06-03 12:16:29] 2025-06-03 10:07:55,214 [wrapper] pandaids: 6677397910
[2025-06-03 12:16:29] 2025-06-03 10:07:56,177 [wrapper] cleanup supervisor_pilot  8356 18896
[2025-06-03 12:16:29] 2025-06-03 10:07:56,246 [wrapper] Test setup, not cleaning
[2025-06-03 12:16:29] 2025-06-03 10:07:56,286 [wrapper] apfmon messages muted
[2025-06-03 12:16:29] 2025-06-03 10:07:56,353 [wrapper] ==== wrapper stdout END ====
[2025-06-03 12:16:29] 2025-06-03 10:07:56,424 [wrapper] ==== wrapper stderr END ====
[2025-06-03 12:16:29]  *** Error codes and diagnostics ***
[2025-06-03 12:16:29]     "exeErrorCode": 0,
[2025-06-03 12:16:29]     "exeErrorDiag": "",
[2025-06-03 12:16:29]     "pilotErrorCode": 0,
[2025-06-03 12:16:29]     "pilotErrorDiag": "",
[2025-06-03 12:16:29]  *** Listing of results directory ***
[2025-06-03 12:16:29] total 400636
[2025-06-03 12:16:29] -rw-r--r--. 1 boinc boinc    495897 Jun  2 21:34 pilot3.tar.gz
[2025-06-03 12:16:29] -rw-r--r--. 1 boinc boinc      5111 Jun  2 22:00 queuedata.json
[2025-06-03 12:16:29] -rwx------. 1 boinc boinc     37140 Jun  2 22:01 runpilot2-wrapper.sh
[2025-06-03 12:16:29] -rw-r--r--. 1 boinc boinc       100 Jun  3 08:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 12:16:29] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 08:17 run_atlas
[2025-06-03 12:16:29] -rw-r--r--. 1 boinc boinc       105 Jun  3 08:17 job.xml
[2025-06-03 12:16:29] -rw-r--r--. 1 boinc boinc      6393 Jun  3 08:17 init_data.xml
[2025-06-03 12:16:29] -rw-r--r--. 2 boinc boinc 216319502 Jun  3 08:17 EVNT.45006593._000419.pool.root.1
[2025-06-03 12:16:29] -rw-r--r--. 2 boinc boinc     15093 Jun  3 08:17 start_atlas.sh
[2025-06-03 12:16:29] drwxrwx--x. 2 boinc boinc        68 Jun  3 08:17 shared
[2025-06-03 12:16:29] -rw-r--r--. 2 boinc boinc    508883 Jun  3 08:17 input.tar.gz
[2025-06-03 12:16:29] -rw-r--r--. 1 boinc boinc         0 Jun  3 08:17 boinc_lockfile
[2025-06-03 12:16:29] -rw-r--r--. 1 boinc boinc      2524 Jun  3 08:17 pandaJob.out
[2025-06-03 12:16:29] -rw-------. 1 boinc boinc    988073 Jun  3 08:20 agis_schedconf.cvmfs.json
[2025-06-03 12:16:29] drwx------. 4 boinc boinc      4096 Jun  3 08:21 pilot3
[2025-06-03 12:16:29] -rw-------. 1 boinc boinc 186985663 Jun  3 12:04 HITS.45006595._010469.pool.root.1
[2025-06-03 12:16:29] -rw-r--r--. 1 boinc boinc       531 Jun  3 12:04 boinc_task_state.xml
[2025-06-03 12:16:29] -rw-------. 1 boinc boinc      1012 Jun  3 12:05 memory_monitor_summary.json
[2025-06-03 12:16:29] -rw-------. 1 boinc boinc   1603667 Jun  3 12:06 agis_ddmendpoints.agis.ALL.json
[2025-06-03 12:16:29] -rw-------. 1 boinc boinc    385451 Jun  3 12:06 log.45006595._010469.job.log.tgz.1
[2025-06-03 12:16:29] -rw-------. 1 boinc boinc        95 Jun  3 12:07 pilot_heartbeat.json
[2025-06-03 12:16:29] -rw-------. 1 boinc boinc      7681 Jun  3 12:07 heartbeat.json
[2025-06-03 12:16:29] -rw-------. 1 boinc boinc      4540 Jun  3 12:07 pilotlog.txt
[2025-06-03 12:16:29] -rw-------. 1 boinc boinc   1174437 Jun  3 12:07 log.45006595._010469.job.log.1
[2025-06-03 12:16:29] -rw-------. 1 boinc boinc       357 Jun  3 12:07 output.list
[2025-06-03 12:16:29] -rw-r--r--. 1 boinc boinc       620 Jun  3 12:07 runtime_log
[2025-06-03 12:16:29] -rw-------. 1 boinc boinc   1576960 Jun  3 12:07 result.tar.gz
[2025-06-03 12:16:29] -rw-------. 1 boinc boinc       656 Jun  3 12:07 yIGMDm4WQg7n9Rq4apOajLDm4fhM0noT9bVof3QYDm8UWKDmVQ1bMm.diag
[2025-06-03 12:16:29] -rw-r--r--. 1 boinc boinc      8673 Jun  3 12:07 runtime_log.err
[2025-06-03 12:16:29] -rw-r--r--. 1 boinc boinc      8192 Jun  3 12:16 boinc_mmap_file
[2025-06-03 12:16:29] -rw-r--r--. 1 boinc boinc        28 Jun  3 12:16 wrapper_checkpoint.txt
[2025-06-03 12:16:29] -rw-r--r--. 1 boinc boinc     20508 Jun  3 12:16 stderr.txt
[2025-06-03 12:16:29] HITS file was successfully produced:
[2025-06-03 12:16:30] -rw-------. 1 boinc boinc 186985663 Jun  3 12:04 shared/HITS.pool.root.1
[2025-06-03 12:16:30]  *** Contents of shared directory: ***
[2025-06-03 12:16:30] total 395912
[2025-06-03 12:16:30] -rw-r--r--. 2 boinc boinc 216319502 Jun  3 08:17 ATLAS.root_0
[2025-06-03 12:16:30] -rw-r--r--. 2 boinc boinc     15093 Jun  3 08:17 start_atlas.sh
[2025-06-03 12:16:30] -rw-r--r--. 2 boinc boinc    508883 Jun  3 08:17 input.tar.gz
[2025-06-03 12:16:30] -rw-------. 1 boinc boinc 186985663 Jun  3 12:04 HITS.pool.root.1
[2025-06-03 12:16:30] -rw-------. 1 boinc boinc   1576960 Jun  3 12:07 result.tar.gz
12:16:31 (12775): run_atlas exited; CPU time 50995.861540
12:16:31 (12775): called boinc_finish(0)

</stderr_txt>
]]>

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