Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:37:54 (23351): wrapper (7.7.26015): starting
08:37:54 (23351): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 08:37:54] Arguments: --nthreads 8
[2025-06-03 08:37:54] Threads: 8
[2025-06-03 08:37:54] Checking for CVMFS
[2025-06-03 08:37:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 08:37:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 08:37:55] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 08:37:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 08:37:56] 2.11.2.0 19945 31599 96416 146731 3 16 13675934 25165825 4636 130560 0 16180217 99.760 18891405 2092 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-03 08:37:56] CVMFS is ok
[2025-06-03 08:37:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 08:37:56] Checking for apptainer binary...
[2025-06-03 08:37:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 08:37:56] Running /usr/bin/apptainer --version
[2025-06-03 08:37:56] apptainer version 1.3.2-1.el7
[2025-06-03 08:37:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 09:08:31] cg-vwn324.simple-grid.lan
[2025-06-03 09:08:31] apptainer works
[2025-06-03 09:08:31] Set ATHENA_PROC_NUMBER=8
[2025-06-03 09:08:31] Set ATHENA_CORE_NUMBER=8
[2025-06-03 09:08:31] Starting ATLAS job with PandaID=6677392164
[2025-06-03 09:08:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 13:05:53]  *** The last 200 lines of the pilot log: ***
[2025-06-03 13:05:53] 2025-06-03 10:55:22,621 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 13:05:53] 2025-06-03 10:55:22,621 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 13:05:53] 2025-06-03 10:55:22,621 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 13:05:53] 2025-06-03 10:55:22,621 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 13:05:53] 2025-06-03 10:55:22,626 | INFO     | fitting pss+swap vs Time
[2025-06-03 13:05:53] 2025-06-03 10:55:22,627 | INFO     | sum of square deviations: 2871616632.5
[2025-06-03 13:05:53] 2025-06-03 10:55:22,628 | INFO     | sum of deviations: 105728399541.49998
[2025-06-03 13:05:53] 2025-06-03 10:55:22,629 | INFO     | mean x: 1748941602.5
[2025-06-03 13:05:53] 2025-06-03 10:55:22,629 | INFO     | mean y: 2388271.6333333333
[2025-06-03 13:05:53] 2025-06-03 10:55:22,629 | INFO     | -- intersect: -64390885688.09021
[2025-06-03 13:05:53] 2025-06-03 10:55:22,629 | INFO     | intersect: -64390885688.09021
[2025-06-03 13:05:53] 2025-06-03 10:55:22,629 | INFO     | chi2: 7.0221055446995155
[2025-06-03 13:05:53] 2025-06-03 10:55:22,630 | INFO     | sum of square deviations: 2671343110.0
[2025-06-03 13:05:53] 2025-06-03 10:55:22,631 | INFO     | sum of deviations: 116628272656.0
[2025-06-03 13:05:53] 2025-06-03 10:55:22,632 | INFO     | mean x: 1748941450.0
[2025-06-03 13:05:53] 2025-06-03 10:55:22,632 | INFO     | mean y: 2396367.687804878
[2025-06-03 13:05:53] 2025-06-03 10:55:22,632 | INFO     | -- intersect: -76354706367.04102
[2025-06-03 13:05:53] 2025-06-03 10:55:22,632 | INFO     | intersect: -76354706367.04102
[2025-06-03 13:05:53] 2025-06-03 10:55:22,632 | INFO     | chi2: 6.305047971406256
[2025-06-03 13:05:53] 2025-06-03 10:55:22,633 | INFO     | current chi2=6.305047971406256 (change=10.21143257857346 %)
[2025-06-03 13:05:53] 2025-06-03 10:55:22,633 | INFO     | right removable region: 204
[2025-06-03 13:05:53] 2025-06-03 10:55:22,633 | INFO     | sum of square deviations: 2671343110.0
[2025-06-03 13:05:53] 2025-06-03 10:55:22,642 | INFO     | sum of deviations: 34825796212.0
[2025-06-03 13:05:53] 2025-06-03 10:55:22,642 | INFO     | mean x: 1748941755.0
[2025-06-03 13:05:53] 2025-06-03 10:55:22,643 | INFO     | mean y: 2442210.2341463417
[2025-06-03 13:05:53] 2025-06-03 10:55:22,643 | INFO     | -- intersect: -22798181535.282253
[2025-06-03 13:05:53] 2025-06-03 10:55:22,643 | INFO     | intersect: -22798181535.282253
[2025-06-03 13:05:53] 2025-06-03 10:55:22,643 | INFO     | chi2: 2.234054820691724
[2025-06-03 13:05:53] 2025-06-03 10:55:22,643 | INFO     | current chi2=2.234054820691724 (change=68.18539957181288 %)
[2025-06-03 13:05:53] 2025-06-03 10:55:22,644 | INFO     | sum of square deviations: 2480604650.0
[2025-06-03 13:05:53] 2025-06-03 10:55:22,645 | INFO     | sum of deviations: -2732398803.000004
[2025-06-03 13:05:53] 2025-06-03 10:55:22,646 | INFO     | mean x: 1748941907.5
[2025-06-03 13:05:53] 2025-06-03 10:55:22,646 | INFO     | mean y: 2472070.32
[2025-06-03 13:05:53] 2025-06-03 10:55:22,646 | INFO     | -- intersect: 1928940592.649644
[2025-06-03 13:05:53] 2025-06-03 10:55:22,646 | INFO     | intersect: 1928940592.649644
[2025-06-03 13:05:53] 2025-06-03 10:55:22,646 | INFO     | chi2: 0.808596317676986
[2025-06-03 13:05:53] 2025-06-03 10:55:22,647 | INFO     | current chi2=0.808596317676986 (change=63.80588738522438 %)
[2025-06-03 13:05:53] 2025-06-03 10:55:22,647 | INFO     | sum of square deviations: 2299168690.0
[2025-06-03 13:05:53] 2025-06-03 10:55:22,648 | INFO     | sum of deviations: -5950464233.999999
[2025-06-03 13:05:53] 2025-06-03 10:55:22,649 | INFO     | mean x: 1748942060.0
[2025-06-03 13:05:53] 2025-06-03 10:55:22,649 | INFO     | mean y: 2474758.2256410257
[2025-06-03 13:05:53] 2025-06-03 10:55:22,649 | INFO     | -- intersect: 4528900861.98764
[2025-06-03 13:05:53] 2025-06-03 10:55:22,649 | INFO     | intersect: 4528900861.98764
[2025-06-03 13:05:53] 2025-06-03 10:55:22,649 | INFO     | chi2: 0.7965424089269828
[2025-06-03 13:05:53] 2025-06-03 10:55:22,649 | INFO     | current chi2=0.7965424089269828 (change=1.4907202131012502 %)
[2025-06-03 13:05:53] 2025-06-03 10:55:22,649 | INFO     | left removable region: 30
[2025-06-03 13:05:53] 2025-06-03 10:55:22,650 | INFO     | sum of square deviations: 1633472487.5
[2025-06-03 13:05:53] 2025-06-03 10:55:22,651 | INFO     | sum of deviations: 4036444328.500001
[2025-06-03 13:05:53] 2025-06-03 10:55:22,651 | INFO     | mean x: 1748942334.5
[2025-06-03 13:05:53] 2025-06-03 10:55:22,651 | INFO     | mean y: 2488293.706896552
[2025-06-03 13:05:53] 2025-06-03 10:55:22,651 | INFO     | -- intersect: -4319291485.86596
[2025-06-03 13:05:53] 2025-06-03 10:55:22,651 | INFO     | intersect: -4319291485.86596
[2025-06-03 13:05:53] 2025-06-03 10:55:22,652 | INFO     | chi2: 0.00015711878727740322
[2025-06-03 13:05:53] 2025-06-03 10:55:22,652 | INFO     | -- intersect: -4319291485.86596
[2025-06-03 13:05:53] 2025-06-03 10:55:22,652 | INFO     | current memory leak: 2.47 B/s (using 174 data points, chi2=0.00)
[2025-06-03 13:05:53] 2025-06-03 10:55:22,653 | INFO     | ..............................
[2025-06-03 13:05:53] 2025-06-03 10:55:22,653 | INFO     | . Timing measurements:
[2025-06-03 13:05:53] 2025-06-03 10:55:22,653 | INFO     | . get job = 0 s
[2025-06-03 13:05:53] 2025-06-03 10:55:22,653 | INFO     | . initial setup = 10 s
[2025-06-03 13:05:53] 2025-06-03 10:55:22,653 | INFO     | . payload setup = 181 s
[2025-06-03 13:05:53] 2025-06-03 10:55:22,653 | INFO     | . stage-in = 0 s
[2025-06-03 13:05:53] 2025-06-03 10:55:22,653 | INFO     | . payload execution = 12941 s
[2025-06-03 13:05:53] 2025-06-03 10:55:22,653 | INFO     | . stage-out = 2 s
[2025-06-03 13:05:53] 2025-06-03 10:55:22,653 | INFO     | . log creation = 1 s
[2025-06-03 13:05:53] 2025-06-03 10:55:22,653 | INFO     | ..............................
[2025-06-03 13:05:53] 2025-06-03 10:55:23,214 | INFO     | 
[2025-06-03 13:05:53] 2025-06-03 10:55:23,215 | INFO     | job summary report
[2025-06-03 13:05:53] 2025-06-03 10:55:23,215 | INFO     | --------------------------------------------------
[2025-06-03 13:05:53] 2025-06-03 10:55:23,215 | INFO     | PanDA job id: 6677392164
[2025-06-03 13:05:53] 2025-06-03 10:55:23,215 | INFO     | task id: 45006595
[2025-06-03 13:05:53] 2025-06-03 10:55:23,215 | INFO     | errors: (none)
[2025-06-03 13:05:53] 2025-06-03 10:55:23,215 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 13:05:53] 2025-06-03 10:55:23,215 | INFO     | pilot state: finished 
[2025-06-03 13:05:53] 2025-06-03 10:55:23,215 | INFO     | transexitcode: 0
[2025-06-03 13:05:53] 2025-06-03 10:55:23,216 | INFO     | exeerrorcode: 0
[2025-06-03 13:05:53] 2025-06-03 10:55:23,216 | INFO     | exeerrordiag: 
[2025-06-03 13:05:53] 2025-06-03 10:55:23,216 | INFO     | exitcode: 0
[2025-06-03 13:05:53] 2025-06-03 10:55:23,216 | INFO     | exitmsg: OK
[2025-06-03 13:05:53] 2025-06-03 10:55:23,216 | INFO     | cpuconsumptiontime: 47152 s
[2025-06-03 13:05:53] 2025-06-03 10:55:23,216 | INFO     | nevents: 400
[2025-06-03 13:05:53] 2025-06-03 10:55:23,216 | INFO     | neventsw: 0
[2025-06-03 13:05:53] 2025-06-03 10:55:23,216 | INFO     | pid: 23869
[2025-06-03 13:05:53] 2025-06-03 10:55:23,216 | INFO     | pgrp: 23869
[2025-06-03 13:05:53] 2025-06-03 10:55:23,216 | INFO     | corecount: 8
[2025-06-03 13:05:53] 2025-06-03 10:55:23,216 | INFO     | event service: False
[2025-06-03 13:05:53] 2025-06-03 10:55:23,217 | INFO     | sizes: {0: 2405006, 1: 2405205, 12: 2405205, 23: 2405233, 33: 2405261, 44: 2405317, 55: 2405473, 66: 2405501, 76: 2405529, 87: 2405585, 90: 2405819, 98: 2406127, 1
[2025-06-03 13:05:53] 2025-06-03 10:55:23,217 | INFO     | --------------------------------------------------
[2025-06-03 13:05:53] 2025-06-03 10:55:23,217 | INFO     | 
[2025-06-03 13:05:53] 2025-06-03 10:55:23,217 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-03 13:05:53] 2025-06-03 10:55:23,507 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 13:05:53] 2025-06-03 10:55:23,508 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 13:05:53] 2025-06-03 10:55:23,508 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 13:05:53] 2025-06-03 10:55:23,508 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 13:05:53] 2025-06-03 10:55:23,508 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 13:05:53] 2025-06-03 10:55:23,508 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 13:05:53] 2025-06-03 10:55:23,508 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 13:05:53] 2025-06-03 10:55:23,508 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 13:05:53] 2025-06-03 10:55:23,508 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 13:05:53] 2025-06-03 10:55:23,508 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 13:05:53] 2025-06-03 10:55:23,509 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 13:05:53] 2025-06-03 10:55:23,509 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 13:05:53] 2025-06-03 10:55:23,509 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 13:05:53] 2025-06-03 10:55:23,509 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 13:05:53] 2025-06-03 10:55:23,509 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 13:05:53] 2025-06-03 10:55:23,509 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 13:05:53] 2025-06-03 10:55:23,509 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 13:05:53] 2025-06-03 10:55:23,509 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 13:05:53] 2025-06-03 10:55:23,509 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 13:05:53] 2025-06-03 10:55:23,509 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 13:05:53] 2025-06-03 10:55:23,509 | INFO     | job 6677392164 has completed (purged errors)
[2025-06-03 13:05:53] 2025-06-03 10:55:23,510 | INFO     | overall cleanup function is called
[2025-06-03 13:05:53] 2025-06-03 10:55:24,522 | INFO     | --- collectZombieJob: --- 10, [23869]
[2025-06-03 13:05:53] 2025-06-03 10:55:24,523 | INFO     | zombie collector waiting for pid 23869
[2025-06-03 13:05:53] 2025-06-03 10:55:24,523 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 13:05:53] 2025-06-03 10:55:24,523 | INFO     | collected zombie processes
[2025-06-03 13:05:53] 2025-06-03 10:55:24,523 | INFO     | will attempt to kill all subprocesses of pid=23869
[2025-06-03 13:05:53] 2025-06-03 10:55:24,631 | INFO     | process IDs to be killed: [23869] (in reverse order)
[2025-06-03 13:05:53] 2025-06-03 10:55:25,876 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 13:05:53] 2025-06-03 10:55:25,877 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 13:05:53] 2025-06-03 10:55:25,880 | INFO     | did not find any defunct processes belonging to 23869
[2025-06-03 13:05:53] 2025-06-03 10:55:25,883 | INFO     | did not find any defunct processes belonging to 23869
[2025-06-03 13:05:53] 2025-06-03 10:55:25,883 | INFO     | ready for new job
[2025-06-03 13:05:53] 2025-06-03 10:55:25,883 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 13:05:53] 2025-06-03 10:55:25,885 | INFO     | **************************************
[2025-06-03 13:05:53] 2025-06-03 10:55:25,885 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 13:05:53] 2025-06-03 10:55:25,885 | INFO     | **************************************
[2025-06-03 13:05:53] 2025-06-03 10:55:25,885 | INFO     | 
[2025-06-03 13:05:53] 2025-06-03 10:55:25,886 | INFO     | pilot is running in a VM
[2025-06-03 13:05:53] 2025-06-03 10:55:25,886 | INFO     | architecture information:
[2025-06-03 13:05:53] 2025-06-03 10:55:25,902 | INFO     | executing command: cat /etc/os-release
[2025-06-03 13:05:53] 2025-06-03 10:55:26,205 | INFO     | cat /etc/os-release:
[2025-06-03 13:05:53] NAME="CentOS Linux"
[2025-06-03 13:05:53] VERSION="7 (Core)"
[2025-06-03 13:05:53] ID="centos"
[2025-06-03 13:05:53] ID_LIKE="rhel fedora"
[2025-06-03 13:05:53] VERSION_ID="7"
[2025-06-03 13:05:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 13:05:53] ANSI_COLOR="0;31"
[2025-06-03 13:05:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 13:05:53] HOME_URL="https://www.centos.org/"
[2025-06-03 13:05:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 13:05:53] 
[2025-06-03 13:05:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 13:05:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 13:05:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 13:05:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 13:05:53] 
[2025-06-03 13:05:53] 2025-06-03 10:55:26,205 | INFO     | **************************************
[2025-06-03 13:05:53] 2025-06-03 10:55:26,709 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-03 13:05:53] 2025-06-03 10:55:26,960 | INFO     | sufficient remaining disk space (496820551680 B)
[2025-06-03 13:05:53] 2025-06-03 10:55:26,960 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 13:05:53] 2025-06-03 10:55:26,960 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 13:05:53] 2025-06-03 10:55:26,960 | INFO     | update_server=False
[2025-06-03 13:05:53] 2025-06-03 10:55:26,960 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 13:05:53] 2025-06-03 10:55:26,961 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 13:05:53] 2025-06-03 10:55:26,961 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 13:05:53] 2025-06-03 10:55:26,961 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 13:05:53] 2025-06-03 10:55:26,961 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 13:05:53] 2025-06-03 10:55:26,961 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:05:53] 2025-06-03 10:55:26,962 | INFO     | aborting loop
[2025-06-03 13:05:53] 2025-06-03 10:55:27,317 | INFO     | all data control threads have been joined
[2025-06-03 13:05:53] 2025-06-03 10:55:27,810 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:05:53] 2025-06-03 10:55:27,816 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 13:05:53] 2025-06-03 10:55:27,952 | INFO     | all job control threads have been joined
[2025-06-03 13:05:53] 2025-06-03 10:55:27,968 | INFO     | [job] job monitor thread has finished
[2025-06-03 13:05:53] 2025-06-03 10:55:27,974 | INFO     | [job] retrieve thread has finished
[2025-06-03 13:05:53] 2025-06-03 10:55:28,145 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 13:05:53] 2025-06-03 10:55:28,324 | INFO     | [data] control thread has finished
[2025-06-03 13:05:53] 2025-06-03 10:55:28,396 | INFO     | [payload] validate_post thread has finished
[2025-06-03 13:05:53] 2025-06-03 10:55:28,445 | INFO     | all payload control threads have been joined
[2025-06-03 13:05:53] 2025-06-03 10:55:28,485 | INFO     | [job] validate thread has finished
[2025-06-03 13:05:53] 2025-06-03 10:55:28,817 | INFO     | [job] queue monitor thread has finished
[2025-06-03 13:05:53] 2025-06-03 10:55:28,959 | INFO     | [job] control thread has finished
[2025-06-03 13:05:53] 2025-06-03 10:55:29,138 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 13:05:53] 2025-06-03 10:55:29,207 | INFO     | [data] copytool_in thread has finished
[2025-06-03 13:05:53] 2025-06-03 10:55:29,373 | INFO     | [payload] failed_post thread has finished
[2025-06-03 13:05:53] 2025-06-03 10:55:29,446 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 13:05:53] 2025-06-03 10:55:29,452 | INFO     | [payload] control thread has finished
[2025-06-03 13:05:53] 2025-06-03 10:55:29,824 | INFO     | [data] copytool_out thread has finished
[2025-06-03 13:05:53] 2025-06-03 10:55:29,878 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 13:05:53] 2025-06-03 10:55:33,888 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 13:05:53] 2025-06-03 10:55:37,957 | INFO     | job.realtimelogging is not enabled
[2025-06-03 13:05:53] 2025-06-03 10:55:38,964 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 13:05:53] 2025-06-03 10:55:39,628 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139988330145600)>', '<ExcThread(monitor, started 139987681015552)>']
[2025-06-03 13:05:53] 2025-06-03 10:55:40,045 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 13:05:53] 2025-06-03 10:55:40,046 | INFO     | [monitor] control thread has ended
[2025-06-03 13:05:53] 2025-06-03 10:55:44,653 | INFO     | all workflow threads have been joined
[2025-06-03 13:05:53] 2025-06-03 10:55:44,654 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 13:05:53] 2025-06-03 10:55:44,654 | INFO     | traces error code: 0
[2025-06-03 13:05:53] 2025-06-03 10:55:44,654 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 13:05:53] 2025-06-03 10:55:44,920 [wrapper] ==== pilot stdout END ====
[2025-06-03 13:05:53] 2025-06-03 10:55:45,023 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 13:05:53] 2025-06-03 10:55:45,139 [wrapper] pilotpid: 17208
[2025-06-03 13:05:53] 2025-06-03 10:55:45,194 [wrapper] Pilot exit status: 0
[2025-06-03 13:05:53] 2025-06-03 10:55:45,573 [wrapper] pandaids: 6677392164
[2025-06-03 13:05:53] 2025-06-03 10:55:46,200 [wrapper] cleanup supervisor_pilot 30082 17209
[2025-06-03 13:05:53] 2025-06-03 10:55:46,326 [wrapper] Test setup, not cleaning
[2025-06-03 13:05:53] 2025-06-03 10:55:46,445 [wrapper] apfmon messages muted
[2025-06-03 13:05:53] 2025-06-03 10:55:46,557 [wrapper] ==== wrapper stdout END ====
[2025-06-03 13:05:53] 2025-06-03 10:55:46,656 [wrapper] ==== wrapper stderr END ====
[2025-06-03 13:05:53]  *** Error codes and diagnostics ***
[2025-06-03 13:05:53]     "exeErrorCode": 0,
[2025-06-03 13:05:53]     "exeErrorDiag": "",
[2025-06-03 13:05:53]     "pilotErrorCode": 0,
[2025-06-03 13:05:53]     "pilotErrorDiag": "",
[2025-06-03 13:05:53]  *** Listing of results directory ***
[2025-06-03 13:05:53] total 391672
[2025-06-03 13:05:53] -rw-r--r--. 1 boinc boinc    495897 Jun  2 20:30 pilot3.tar.gz
[2025-06-03 13:05:53] -rw-r--r--. 1 boinc boinc      5111 Jun  2 20:34 queuedata.json
[2025-06-03 13:05:53] -rwx------. 1 boinc boinc     37140 Jun  2 20:36 runpilot2-wrapper.sh
[2025-06-03 13:05:53] -rw-r--r--. 1 boinc boinc       100 Jun  3 08:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 13:05:53] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 08:37 run_atlas
[2025-06-03 13:05:53] -rw-r--r--. 1 boinc boinc       105 Jun  3 08:37 job.xml
[2025-06-03 13:05:53] -rw-r--r--. 2 boinc boinc 218387663 Jun  3 08:37 EVNT.45006593._000306.pool.root.1
[2025-06-03 13:05:53] -rw-r--r--. 2 boinc boinc     15093 Jun  3 08:37 start_atlas.sh
[2025-06-03 13:05:53] drwxrwx--x. 2 boinc boinc        68 Jun  3 08:37 shared
[2025-06-03 13:05:53] -rw-r--r--. 2 boinc boinc    508879 Jun  3 08:37 input.tar.gz
[2025-06-03 13:05:53] -rw-r--r--. 1 boinc boinc      6390 Jun  3 08:37 init_data.xml
[2025-06-03 13:05:53] -rw-r--r--. 1 boinc boinc         0 Jun  3 08:37 boinc_lockfile
[2025-06-03 13:05:53] -rw-r--r--. 1 boinc boinc      2521 Jun  3 09:08 pandaJob.out
[2025-06-03 13:05:53] -rw-------. 1 boinc boinc    986901 Jun  3 09:11 agis_schedconf.cvmfs.json
[2025-06-03 13:05:53] drwx------. 4 boinc boinc      4096 Jun  3 09:11 pilot3
[2025-06-03 13:05:53] -rw-------. 1 boinc boinc 175767622 Jun  3 12:52 HITS.45006595._007652.pool.root.1
[2025-06-03 13:05:53] -rw-r--r--. 1 boinc boinc       531 Jun  3 12:52 boinc_task_state.xml
[2025-06-03 13:05:53] -rw-------. 1 boinc boinc      1019 Jun  3 12:53 memory_monitor_summary.json
[2025-06-03 13:05:53] -rw-------. 1 boinc boinc   1603667 Jun  3 12:53 agis_ddmendpoints.agis.ALL.json
[2025-06-03 13:05:53] -rw-------. 1 boinc boinc    393009 Jun  3 12:53 log.45006595._007652.job.log.tgz.1
[2025-06-03 13:05:53] -rw-------. 1 boinc boinc        95 Jun  3 12:54 pilot_heartbeat.json
[2025-06-03 13:05:53] -rw-------. 1 boinc boinc      7691 Jun  3 12:55 heartbeat.json
[2025-06-03 13:05:53] -rw-------. 1 boinc boinc      4611 Jun  3 12:55 pilotlog.txt
[2025-06-03 13:05:53] -rw-------. 1 boinc boinc   1150816 Jun  3 12:55 log.45006595._007652.job.log.1
[2025-06-03 13:05:53] -rw-------. 1 boinc boinc       357 Jun  3 12:55 output.list
[2025-06-03 13:05:53] -rw-r--r--. 1 boinc boinc       620 Jun  3 12:55 runtime_log
[2025-06-03 13:05:53] -rw-------. 1 boinc boinc   1566720 Jun  3 12:55 result.tar.gz
[2025-06-03 13:05:53] -rw-r--r--. 1 boinc boinc      8659 Jun  3 12:55 runtime_log.err
[2025-06-03 13:05:53] -rw-------. 1 boinc boinc       657 Jun  3 12:55 CaFKDmXCPg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmPEWKDmu7cQXo.diag
[2025-06-03 13:05:53] -rw-r--r--. 1 boinc boinc      8192 Jun  3 13:05 boinc_mmap_file
[2025-06-03 13:05:53] -rw-r--r--. 1 boinc boinc        28 Jun  3 13:05 wrapper_checkpoint.txt
[2025-06-03 13:05:53] -rw-r--r--. 1 boinc boinc     20495 Jun  3 13:05 stderr.txt
[2025-06-03 13:05:53] HITS file was successfully produced:
[2025-06-03 13:05:53] -rw-------. 1 boinc boinc 175767622 Jun  3 12:52 shared/HITS.pool.root.1
[2025-06-03 13:05:53]  *** Contents of shared directory: ***
[2025-06-03 13:05:53] total 386972
[2025-06-03 13:05:53] -rw-r--r--. 2 boinc boinc 218387663 Jun  3 08:37 ATLAS.root_0
[2025-06-03 13:05:53] -rw-r--r--. 2 boinc boinc     15093 Jun  3 08:37 start_atlas.sh
[2025-06-03 13:05:53] -rw-r--r--. 2 boinc boinc    508879 Jun  3 08:37 input.tar.gz
[2025-06-03 13:05:53] -rw-------. 1 boinc boinc 175767622 Jun  3 12:52 HITS.pool.root.1
[2025-06-03 13:05:53] -rw-------. 1 boinc boinc   1566720 Jun  3 12:55 result.tar.gz
13:05:55 (23351): run_atlas exited; CPU time 47329.880301
13:05:55 (23351): called boinc_finish(0)

</stderr_txt>
]]>

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